| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 4,542,898 | (A)6→7 | pseudogene (27/602 nt) | fimB → | type 1 fimbria switch DNA invertase FimB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 4,542,892 | 1 | . | A | 98.4% | 470.7 / ‑0.7 | 125 | pseudogene (21/602 nt) | fimB | type 1 fimbria switch DNA invertase FimB |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base A (79/44); total (80/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 138 total aligned reads displayed.
CCACTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑AAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGT > NZ_CP025268/4542754‑4543026 | aCGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑aaaaaaa > 2:1078032/1‑139 (MQ=255) gttagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAATGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑aaaaacagg > 1:4209928/1‑136 (MQ=255) gttagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGTCTGCTAA‑C‑aaaaaaagg > 1:184837/1‑137 (MQ=255) gttagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑aaaaaaagg < 2:3463849/140‑4 (MQ=255) gttagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑aaaaaaagg > 1:2082726/1‑137 (MQ=255) ttagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑aaaaaaagga < 1:3417665/140‑5 (MQ=255) ttagttaTTAAGCAAACGGGCGCGGTTATAAACATAATCAGGATAAAAATGTTGGGTTATAGCTAACCCAGCACAGCGAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGTAGAATAAGGCGGATAA‑C‑aaaatgaggt > 2:33320/1‑134 (MQ=255) tagttaTTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑aaaaaaaggaa < 1:1433721/140‑6 (MQ=255) ttattaAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACtt > 2:5161228/1‑140 (MQ=255) ttaAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCt < 2:2972608/140‑1 (MQ=255) ttaAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTACTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCt < 2:2971017/140‑1 (MQ=255) aaGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGa > 1:724781/1‑140 (MQ=255) aaGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGa > 1:724800/1‑140 (MQ=255) gCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGAcc < 2:1529770/140‑1 (MQ=255) gCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGAcc < 2:1621041/140‑1 (MQ=255) aaaCGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCa > 1:2263725/1‑140 (MQ=255) cGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGaa > 2:1608576/1‑140 (MQ=255) gCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGaaa < 1:2237729/140‑1 (MQ=255) gCTTTTATAAACATAATCAGGATAAAAATGATGGATTAGTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGaaa < 2:2021752/140‑1 (MQ=255) ttATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGa > 2:1882171/1‑140 (MQ=255) ataAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAAt > 1:3839223/1‑140 (MQ=255) aaaCATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCa < 1:3144985/140‑1 (MQ=255) aaaCATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCa < 1:1428460/140‑1 (MQ=255) aaaCATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCa < 2:3449588/140‑1 (MQ=255) aaaCATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCa < 1:5090356/140‑1 (MQ=255) aaaCATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAACAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCa < 1:4076798/140‑1 (MQ=255) aaTCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCtt > 1:2892238/1‑140 (MQ=255) aaTCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCtt > 2:606022/1‑140 (MQ=255) aaTCAGGATAAAAAGGTTGGGCTATTTCTAACACAGCAAAGCTAGTGACCGTCTGCAAGTATAAGGGAAATACGATGAAGAATAAGGCTGAGAA‑CAAAAAAAGGAAGTTCTTGACCCATACTGAAATCGAATGACTCAtt > 2:447638/1‑140 (MQ=255) cAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTaaa < 2:3027468/140‑1 (MQ=255) gATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAagca > 2:1344664/1‑140 (MQ=255) gATAAAAAAGTTGGAATATTGCTAACCCAAAACAGCTAGAGATCGTCTGTAGTCATAAGGGGAAAGCGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTACATGACCCATAGGGAAGGAGAAGCACTCCTTAAagaa > 2:1442834/1‑138 (MQ=255) tAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAagcagc < 1:2656028/140‑1 (MQ=255) tAAAAATGTTGGATTATTGCTAACCCACCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAagcagc < 1:2656599/140‑1 (MQ=255) aaaaaTGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAgcagca < 1:4089589/140‑1 (MQ=255) aaaTGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCaaa > 2:2283324/1‑140 (MQ=255) gTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATAcc < 1:1538103/140‑1 (MQ=255) gTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTACTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATAcc < 1:4433206/140‑1 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCg > 2:2674229/1‑140 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCg > 1:2682092/1‑140 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCg > 1:3984784/1‑140 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCg > 1:3008701/1‑140 (MQ=255) ttGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCg > 1:3301834/1‑140 (MQ=255) gATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGc > 2:4884281/1‑140 (MQ=255) gCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgc > 1:2808698/1‑140 (MQ=255) ccaaCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgca < 1:3441298/138‑1 (MQ=255) cTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATg < 2:3392138/138‑1 (MQ=255) cTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATg < 2:762993/138‑1 (MQ=255) cTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATg > 1:3392138/1‑138 (MQ=255) aaCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagc > 1:871352/1‑140 (MQ=255) aCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagca > 2:389441/1‑140 (MQ=255) aCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagca < 2:2439999/140‑1 (MQ=255) aCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagca > 1:273623/1‑140 (MQ=255) aCCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATgcagca > 2:4775174/1‑140 (MQ=255) aCCCAGCACAGCTAGTGCGCGTCTGTAATGATAAGGGACAAACGATGAAGAATAAGGGTGATAA‑CAAAAAAAGGAAGTTCCTGACGCATAGTGAAATCGAAACACTCCTTAAAGCAGCAAATACCAGGCCTCATgcggaa > 2:3033469/1‑136 (MQ=255) ccAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACg < 2:1577353/140‑1 (MQ=255) gCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTaa > 2:4036431/1‑140 (MQ=255) gCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTaa > 1:1449319/1‑140 (MQ=255) cacaGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAat < 2:4547461/140‑1 (MQ=255) cacaGCTAGTGCGCGTCTGTAACTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAat > 2:3535811/1‑140 (MQ=255) acaGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAatt > 2:1878477/1‑140 (MQ=255) caGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAatta < 2:3487428/140‑1 (MQ=255) caGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAatta < 1:1883864/140‑1 (MQ=255) caGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAatta < 1:1884168/140‑1 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAattattt > 1:211253/1‑139 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 1:1746445/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 1:1732205/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 2:2969634/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 1:4243836/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 1:211287/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 1:3519620/1‑140 (MQ=255) cTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTg > 1:2794663/1‑140 (MQ=255) tGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTg > 1:833043/1‑140 (MQ=255) cgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActt > 2:1231046/1‑140 (MQ=255) cgTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActt > 2:1124172/1‑140 (MQ=255) tCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttg > 1:1592230/1‑140 (MQ=255) tCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttg > 1:1624609/1‑140 (MQ=255) tCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttg > 1:4662505/1‑140 (MQ=255) tGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgct < 2:880162/140‑1 (MQ=255) tGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgct < 2:1392398/140‑1 (MQ=255) tGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgct < 1:3509585/140‑1 (MQ=255) gTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGGACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgctt > 2:4029248/1‑140 (MQ=255) gTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGActttgctt < 2:2694660/140‑1 (MQ=255) ataAGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGtttt > 1:3897719/1‑140 (MQ=255) taAGGGAAAAACGATGAAGAATAAGGCTGATAACC‑AAAAAAGGAACTTCCTGACCCATCGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTa < 1:4307583/140‑1 (MQ=255) aaGGGAAAAACGATGAAGAATAAGGGTGATAAGA‑AAAAAAGGAACTTCCTGACCCCTGGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTAATGCAGCAAGTAACTCTTGTCTGACTTTGGTTTGTGTTAt > 2:3275391/1‑140 (MQ=255) aaGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTAt > 2:1823026/1‑140 (MQ=255) aaGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTAt > 1:637797/1‑140 (MQ=255) aaGGGAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTAt > 2:147927/1‑140 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa < 1:4884281/140‑1 (MQ=255) ggAAAAACGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCa < 2:641827/140‑1 (MQ=255) aaaaaCGATGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATg < 1:4775174/140‑1 (MQ=255) aaaCGATGAAGAATGAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGt > 1:457404/1‑140 (MQ=255) tGAAGAATAAGGCTGATAA‑CAAAAAAAGGAACTGCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTGGCTTTGTTTTATTCATGGTTTCCgg > 2:1765967/1‑140 (MQ=255) aagaaTAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGc > 1:862867/1‑140 (MQ=255) tAAGGCTGATAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTg > 2:4270034/1‑140 (MQ=255) aTAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 2:4006593/1‑140 (MQ=255) aTAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 1:4847417/1‑140 (MQ=255) aTAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 1:3127515/1‑140 (MQ=255) aTAA‑CAAAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGt > 2:1147506/1‑140 (MQ=255) | CCACTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGATGAAGAATAAGGCTGATAA‑C‑AAAAAAGGAACTTCCTGACCCATAGTGAAATCGAATCACTCCTTAAAGCAGCAAATACCGGGCCTCATGCAGCACGTAATTATTGTCTGACTTTGCTTTGTTTTATTCATGGTTTCCGGGCGAGTGAAATTTGT > NZ_CP025268/4542754‑4543026 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |