| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,394,713 | A→G | pseudogene (966/966 nt) L235P (CTT→CCT) |
ycjG → mpaA ← |
L‑Ala‑D/L‑Glu epimerase murein tripeptide amidase MpaA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,394,713 | 0 | A | G | 99.7% | 958.4 / NA | 294 | pseudogene (966/966 nt) L235P (CTT→CCT) | ycjG mpaA | L‑Ala‑D/L‑Glu epimerase murein tripeptide amidase MpaA |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (156/135); total (159/135) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 294 total aligned reads displayed.
TGTGTACCTCTCGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACACCAACTGCCGAAAGAGCCAGGCGT > NZ_CP025268/1394577‑1394846 | tgtgTACCTCTCGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGAt > 1:3478079/1‑140 (MQ=255) tgtACCTCTCGTGCCATTAGCGCCGCTTTACCGCTGTTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGCCCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGc > 1:1238831/1‑140 (MQ=255) tgtACCTCTCGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGc > 2:1150612/1‑140 (MQ=255) ctcGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCTCCGATGTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTTACGACGGGCGAATTTCAGCTTTAGGATGcactcgcc > 2:2970573/1‑133 (MQ=255) ctcGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGTTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCg‑ca > 2:4593567/1‑140 (MQ=255) ctcGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCg‑ca > 2:4247716/1‑140 (MQ=255) ctcGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCg‑ca > 1:3964106/1‑140 (MQ=255) ctcGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCg‑ca < 1:2322186/140‑1 (MQ=255) ctcGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCg‑ca > 1:656002/1‑140 (MQ=255) ctcGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCg‑ca > 1:840040/1‑140 (MQ=255) ctcGTGCCATTAGCGCCGCTGTAACGCTGGTGCCGCGGGTCAGATTAGCCGATCTTGACGGACCGACGTGGCTGGCGGTAGATGTGGAACAGGAGCTTGAGTTCACGATGGGGGAATGGCTTATTTAGGATGCTAGCg‑ca > 2:3587269/1‑140 (MQ=255) tcGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCg‑cag > 1:1181015/1‑140 (MQ=255) tcGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCg‑cag > 2:2913401/1‑140 (MQ=255) tcGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCAGCTTTAGGATGCCAGCg‑cag > 2:3044794/1‑140 (MQ=255) tcGTGCAATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTTGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCg‑cag > 1:102444/1‑140 (MQ=255) cGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCCCGACGGGCGAATTGCATCTTTAGGATGCCAGCg‑cagc > 1:3317671/1‑140 (MQ=255) cGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCg‑cagc < 1:4496423/140‑1 (MQ=255) gTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCg‑cagca > 1:4459116/1‑140 (MQ=255) gTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCg‑cagca > 1:2828224/1‑140 (MQ=255) gTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCg‑cagca > 1:1330414/1‑140 (MQ=255) gTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCg‑cagca > 1:3194027/1‑140 (MQ=255) gTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCg‑cagca > 2:4686634/1‑140 (MQ=255) gCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAg > 2:3221434/1‑140 (MQ=255) aTTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACGTGGCTGGCGGTAGATGTGGAAGCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGAGGCCAGCG‑CAGCAAGttt > 2:2925467/1‑140 (MQ=255) aGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGcc < 1:3645726/140‑1 (MQ=255) ccgcTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCg > 1:2385868/1‑140 (MQ=255) gcTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCa < 2:158020/140‑1 (MQ=255) gcTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCa < 2:2819882/140‑1 (MQ=255) gcTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCa < 1:4140767/140‑1 (MQ=255) gcTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCa < 1:1043606/140‑1 (MQ=255) gcTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCa < 1:109142/140‑1 (MQ=255) cTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCaa > 1:2261334/1‑140 (MQ=255) cTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCCTGACGGACCGACCTGGCTGGCGGTCTATGTGGAACCGGCGCATCAGGTCACGACGGGCGAATTGCAACTTAAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCaa > 2:2630796/1‑140 (MQ=255) tttACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCaaa < 1:2078330/140‑1 (MQ=255) tACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAaga < 2:1068590/140‑1 (MQ=255) aCCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAagag > 1:1805357/1‑140 (MQ=255) ggTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATAttt > 1:1752292/1‑140 (MQ=255) ggTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATAttt > 1:799060/1‑140 (MQ=255) gTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAAGCGGCGCTTCAGTTCACGACGGGCGAATTGCATAGTTACGAGGCGAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATAttgt > 2:3219672/1‑138 (MQ=255) gTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGGGCTTCAGTTCACGACGGGCGGATTGCATCTGTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATAtttt > 2:3121679/1‑140 (MQ=255) gTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCACAGAGATAtttt > 1:2910127/1‑140 (MQ=255) gTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATAtttt > 2:2377720/1‑140 (MQ=255) gTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATAtttt > 2:3921441/1‑140 (MQ=255) ccGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGCTGTGGAACCGGCGCTTCCGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCg > 1:1784106/1‑140 (MQ=255) ggTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGc < 2:2194949/140‑1 (MQ=255) ggTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGc < 2:3469910/140‑1 (MQ=255) gTCAGTTTCGCCGATCTTGACGGACCGACATGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCt < 1:4204652/140‑1 (MQ=255) cAGTTTCGCCGATCTTGACGGACCGACCAGGCTGGCCATAGATGTGAAACCGACGCTTCAGTACAGCACGGGCGAAGTACATCGTT‑AGAAGGCCGCGCCACCAAGTTGGCCAGCGCAAAGAGATACGTTTAGCAGGCTtc > 2:2660320/1‑140 (MQ=255) ttCGCCGATCTGAGCGGGCCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCTGCTCACGGCGGGCTATTTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTtcgtcg < 2:5012627/140‑1 (MQ=255) tCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTCTTCGCTGGCTTCGTCgg < 2:370754/140‑1 (MQ=255) tCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑AAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCgg < 1:3219045/140‑1 (MQ=255) gCCGATCTTGACGGACCGACCTCGCTGGCGGTAGAGGTTGAACCGGTGCTTCAGTCCACGACGCGCGAATTGCCTCTCTAGGATGCCAGAG‑CAGCAAGGTTGCTATCGCAAAGAGATATTTTTCGCTGGCTTCGTCggag < 2:1000671/140‑1 (MQ=255) ccGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCggagg > 1:3756921/1‑140 (MQ=255) aTCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGgaga < 1:553886/140‑1 (MQ=255) aTCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGgaga < 2:4810679/140‑1 (MQ=255) aTCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGgaga < 1:1138759/140‑1 (MQ=255) cTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCAAGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CTGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATg < 2:4331648/140‑1 (MQ=255) cGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCgg < 2:2722456/140‑1 (MQ=255) ggACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGa < 2:2033978/140‑1 (MQ=255) ggACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGa < 2:1660429/140‑1 (MQ=255) accgaccTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGaaa > 2:2306566/1‑140 (MQ=255) accgaccTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGaaa > 1:1868811/1‑140 (MQ=255) accgaccTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGaaa > 2:13537/1‑140 (MQ=255) cgaccTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAAct < 2:4742982/140‑1 (MQ=255) ccTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTg < 1:1520322/140‑1 (MQ=255) ccTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTg > 2:5060289/1‑140 (MQ=255) ggctgggGGTAGATGTGGAACCGGCGCTTCAGTTCACGGCGGGCTAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTGGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCgg < 2:260604/140‑1 (MQ=255) gcGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGAGCGAATTGCATCTTTAGGATGCCAGCG‑AAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGatg < 1:185068/140‑1 (MQ=255) cGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGatgc > 2:2524284/1‑140 (MQ=255) cGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGatgc > 1:2459177/1‑140 (MQ=255) cGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGatgc < 1:1432466/140‑1 (MQ=255) ggTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCAGCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGatgca > 2:3529862/1‑140 (MQ=255) gATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGTTGatgcaatgc < 1:4309780/140‑1 (MQ=255) gATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGatgcaatgc < 2:3853222/140‑1 (MQ=255) gATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGatgcaatgc < 1:481141/140‑1 (MQ=255) gATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGatgcaatgc < 1:2059150/140‑1 (MQ=255) tgGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGt > 2:1843569/1‑140 (MQ=255) tgGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑AAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGt > 2:805510/1‑140 (MQ=255) ggAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGtt < 1:3047036/140‑1 (MQ=255) gAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTc > 1:1629367/1‑140 (MQ=255) gAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTc > 1:2712496/1‑140 (MQ=255) aaCCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGTGCGGAAACTCTGCGGTGATGCAATGCAAGTTCa < 1:724655/140‑1 (MQ=255) aCCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAg > 1:4647203/1‑140 (MQ=255) cGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGAt > 2:3267705/1‑140 (MQ=255) ggCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATc < 2:5156065/140‑1 (MQ=255) ggCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATc < 1:2656047/140‑1 (MQ=255) ggCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATc < 2:4119519/140‑1 (MQ=255) gcgcTTCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCt > 2:1334606/1‑140 (MQ=255) tCAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGcaca > 1:893109/1‑140 (MQ=255) cAGTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCacac > 1:4591867/1‑140 (MQ=255) gTTCACGACGGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACACCa < 2:3017186/140‑1 (MQ=255) gacgGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACACCAACTGcc > 1:1126130/1‑140 (MQ=255) gacgGGCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACACCAACTGcc > 1:4360752/1‑140 (MQ=255) gCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACACCAACTGCCGAAag > 1:584795/1‑140 (MQ=255) gCGAATTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACACCAACTGCCGAAag > 2:538562/1‑140 (MQ=255) aTTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACACCAACTGCCGAAAGAGcc > 1:4872416/1‑140 (MQ=255) aTTGCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACACCAACTGCCGAAAGAGcc < 2:2474906/140‑1 (MQ=255) gCATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCTGAGGAGATGGGCGCAAACTCTGCGGTGATCCAATTCAAGTTCAGATCTGCCCTCCAACTGCCGAAAGAGCCAgg < 2:1484225/140‑1 (MQ=255) gCATCTTTAGACTGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATCTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCAGTGATGCAATGCAAGTTCAGATCTGCACACCAACTGCCGAAAGAGCCAgg < 2:1740205/140‑1 (MQ=255) cATCTTTAGGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACACCAACTGCCGAAAGAGCCAGGc < 1:5148260/140‑1 (MQ=255) | TGTGTACCTCTCGTGCCATTAGCGCCGCTTTACCGCTGGTGCCGCAGGTCAGTTTCGCCGATCTTGACGGACCGACCTGGCTGGCGGTAGATGTGGAACCGGCGCTTCAGTTCACGACGGGCGAATTGCATCTTTAAGATGCCAGCG‑CAGCAAGTTTGCCATCGCAAAGAGATATTTTTCGCTGGCTTCGTCGGAGGAGATGGGCGGAAACTCTGCGGTGATGCAATGCAAGTTCAGATCTGCACACCAACTGCCGAAAGAGCCAGGCGT > NZ_CP025268/1394577‑1394846 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |