BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	2,016,740	T→C	105 (TAA→TAG)	fliE ←	flagellar hook‑basal body complex protein FliE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	2,016,740	0	T	C	100.0%	700.1 / NA	210	105 (TAA→TAG)	fliE	flagellar hook‑basal body complex protein FliE
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (140/70); total (140/70)

Only 100 of 210 total aligned reads displayed.

GTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGA  >  NZ_CP025268/2016603‑2016873

 ttATCGCGTATACGGGTCGTGGATGGGAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTac                                                                                                                                    >  2:272391/1‑140 (MQ=255)

 ttATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTCTCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTac                                                                                                                                    >  2:1302853/1‑140 (MQ=255)

   aTCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCGGGTATCCATTTTAAACCAGAAAGTGAGTGAGTTTGCGCCATCCATGCCACACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTacac                                                                                                                                  >  2:1695978/1‑140 (MQ=255)

   aTCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTacac                                                                                                                                  >  1:1481665/1‑140 (MQ=255)

    tCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACAcc                                                                                                                                 >  1:1556485/1‑140 (MQ=255)

     cgcgTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCt                                                                                                                                <  2:2213369/140‑1 (MQ=255)

         tataCGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCAt                                                                                                                            >  2:4040507/1‑140 (MQ=255)

           taCGGATCGTGGATGGCAGCAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGc                                                                                                                          >  1:5213272/1‑140 (MQ=255)

           taCGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTTCATGc                                                                                                                          >  2:232016/1‑140 (MQ=255)

           taCGGATCGGGGATGGCAGAAAACGTTCAGGATCAGGAAGCGATGGTAAACCAGAAATTGGGTAAGGTTGTCCCAGACAAGGCCGACGCGGTGAGAGCGGCAGTAATTACCAACAGGTTACACCACCTACACCCGCaatc                                                                                                                          >  2:611179/1‑137 (MQ=255)

              ggATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCtca                                                                                                                       <  2:3256894/140‑1 (MQ=255)

                 tCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCtcatca                                                                                                                    >  1:3897196/1‑140 (MQ=255)

                 tCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCtcatca                                                                                                                    <  2:2110890/140‑1 (MQ=255)

                  cGTGGATGGCAGGAAACGTTCAGGATCAGGTATCCATTTTAAACCATAAATTGAGTGAGTTTGCCCCATCCATGCCGCACGCGGTGAGATCGGATGTAATTAACAACAGGGTACAAAACCTACACCTGCATGCTCATTAc                                                                                                                   >  2:1738828/1‑140 (MQ=255)

                  cGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCAc                                                                                                                   >  2:595554/1‑140 (MQ=255)

                  cGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCAc                                                                                                                   >  1:1599537/1‑140 (MQ=255)

                  cGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCAc                                                                                                                   >  2:3739590/1‑140 (MQ=255)

                   gTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACt                                                                                                                  >  1:4663467/1‑140 (MQ=255)

                   gTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACt                                                                                                                  >  1:1544111/1‑140 (MQ=255)

                    tGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACtt                                                                                                                 >  1:1944418/1‑140 (MQ=255)

                        tGGCAGAAAACGTTCAGGATCAGGAATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATGAACAACAGGTTCCAAAACCTACACCTGCATGCTCATCACTTCCtt                                                                                                             >  2:106604/1‑139 (MQ=255)

                          gCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGAt                                                                                                           >  1:2060417/1‑140 (MQ=255)

                           cAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATa                                                                                                          >  1:467692/1‑140 (MQ=255)

                              aaaaCGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATAcgc                                                                                                       >  1:4118659/1‑140 (MQ=255)

                              aaaaCGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATAcgc                                                                                                       >  1:1758219/1‑140 (MQ=255)

                               aaaCGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATAcgcc                                                                                                      <  2:1327296/140‑1 (MQ=255)

                                   gTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGcca                                                                                                  <  2:4483180/140‑1 (MQ=255)

                                   gTTCAGGATCAGGTATACATTTTAAACCGAAAATTGAGTGAGATTGCCCCATACATGCTCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCAACACCTGCATGCTCATCGCTTCCTGATAcgccgcaa                                                                                                  <  2:4321914/140‑3 (MQ=255)

                                    ttCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGccac                                                                                                 <  2:1471915/140‑1 (MQ=255)

                                    ttCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGccac                                                                                                 <  2:5014809/140‑1 (MQ=255)

                                    ttCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGccac                                                                                                 <  2:1138908/140‑1 (MQ=255)

                                    ttCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGccac                                                                                                 <  1:3971155/140‑1 (MQ=255)

                                         gATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCt                                                                                            <  1:3271169/140‑1 (MQ=255)

                                         gATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCt                                                                                            >  1:1891579/1‑140 (MQ=255)

                                             aGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCttatt                                                                                        >  1:5048037/1‑140 (MQ=255)

                                                tATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACg                                                                                     <  2:761578/140‑1 (MQ=255)

                                                   ccATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACg                                                                                     <  1:4019130/137‑1 (MQ=255)

                                                   ccATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCAc                                                                                  >  2:838144/1‑140 (MQ=255)

                                                   ccATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCAc                                                                                  >  2:345529/1‑140 (MQ=255)

                                                   ccATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCAc                                                                                  <  2:775750/140‑1 (MQ=255)

                                                   ccATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCAc                                                                                  >  2:3593147/1‑140 (MQ=255)

                                                   ccATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCAc                                                                                  >  1:2299365/1‑140 (MQ=255)

                                                   ccATTTTAAACCAGAAATTGAGTGAGTTGGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATAGGCCGCCACCAGCTTATTACGCAc                                                                                  >  2:3382252/1‑140 (MQ=255)

                                                     aTTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCt                                                                                <  2:2472536/140‑1 (MQ=255)

                                                       tttAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGa                                                                              <  1:2627009/140‑1 (MQ=255)

                                                       tttAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGa                                                                              >  1:2515866/1‑140 (MQ=255)

                                                                 aaaTTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCAttt                                                                    >  1:1216219/1‑140 (MQ=255)

                                                                 aaaTTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCAttt                                                                    >  2:2664452/1‑140 (MQ=255)

                                                                 aaaTTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCAttt                                                                    >  2:4585965/1‑140 (MQ=255)

                                                                       agtgagtTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAACCCCCATTTGCagag                                                              >  2:3869031/1‑140 (MQ=255)

                                                                        gtgagtTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGa                                                             >  2:807881/1‑140 (MQ=255)

                                                                           agtTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAAc                                                          >  1:1404107/1‑140 (MQ=255)

                                                                             tttGCCCCATCCATGCCCCCCGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTg                                                        >  1:3829387/1‑140 (MQ=255)

                                                                             tttGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTg                                                        >  2:1384359/1‑140 (MQ=255)

                                                                             tttGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTg                                                        <  2:2160102/140‑1 (MQ=255)

                                                                                     atccatGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCtttt                                                >  1:2029943/1‑140 (MQ=255)

                                                                                     atccatGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCtttt                                                >  2:1150579/1‑140 (MQ=255)

                                                                                     atccatGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCtttt                                                >  2:4776072/1‑140 (MQ=255)

                                                                                     atccatGCCCCACGCGGTGAGATCGAATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCGTAGAAACTGAGGCtttt                                                >  2:4683496/1‑140 (MQ=255)

                                                                                      tccatGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCttttt                                               >  2:4544338/1‑140 (MQ=255)

                                                                                      tccatGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCttttt                                               >  1:3150955/1‑140 (MQ=255)

                                                                                          tGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCat                                           >  1:2468556/1‑140 (MQ=255)

                                                                                           gCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCata                                          >  1:4620469/1‑140 (MQ=255)

                                                                                           gCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCata                                          <  2:1799843/140‑1 (MQ=255)

                                                                                                aCGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGt                                     <  1:4429016/140‑1 (MQ=255)

                                                                                                 cgcgGTGAGATTGGATGTAATTTATTACAGGTTACAACACCTGCACCTGCATGCTCCTCACTTACTGATACGATGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAAAAGAGGCTTTTTCCATATCCGtc                                    >  2:4833578/1‑140 (MQ=255)

                                                                                                 cgcgGTGAGATTGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCAGGCTCATCACTTCCTGATAAGCCGCGACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtc                                    >  2:1544991/1‑140 (MQ=255)

                                                                                                 cgcgGTGAGATCGGATGTAATTTAAAACAGGTTAGAAAACCTACACCTGCATGCTCATCACTTCCTGATAGGCCGCCACCAGCTTACTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATCTCGGtc                                    >  2:3026045/1‑140 (MQ=255)

                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTACAACACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtc                                    >  1:3215255/1‑140 (MQ=255)

                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtc                                    >  2:5053398/1‑140 (MQ=255)

                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtc                                    >  2:2786683/1‑140 (MQ=255)

                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtc                                    >  1:346256/1‑140 (MQ=255)

                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtc                                    >  2:3318942/1‑140 (MQ=255)

                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtc                                    >  1:3358502/1‑140 (MQ=255)

                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCGCATCACTTCCTGATACGCCGCCCCCAGCTTATTACGCACCTGAACCCCCCTTTGCATAGAGACTGAGGCTTTTTGCACATcagac                                    >  2:3637924/1‑136 (MQ=255)

                                                                                                 cgcgGTGACATCGGATGTAAGTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCAGAATCCCCACTGGCATAGAAACAGAGGCTTTTTGCATATCGGtc                                    >  2:416201/1‑140 (MQ=255)

                                                                                                     gTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtcatca                                <  1:1986328/140‑1 (MQ=255)

                                                                                                     gTGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGtcatca                                <  1:3318942/140‑1 (MQ=255)

                                                                                                      tGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATcac                               >  2:3465569/1‑140 (MQ=255)

                                                                                                      tGAGATCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATcac                               >  1:3720347/1‑140 (MQ=255)

                                                                                                       gagaTCGGCTGTAATTAACAACCGGTTCCAACACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATcaca                              <  2:1191301/140‑1 (MQ=255)

                                                                                                       gagaTCGGATGTAATTAACAACAGGTTACACAACCTACACCTGCATGCTCACCACTTCCTGATACGCCGCCACCAGCTTATTCCGCACCTGTATCCCCATTTGCATAGAAACTGATGCTTTTTGCATATCGGTCATcaca                              <  2:1590129/140‑1 (MQ=255)

                                                                                                       gagaTCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATcaca                              <  1:3385283/140‑1 (MQ=255)

                                                                                                        agaTCGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACAt                             >  1:4231919/1‑140 (MQ=255)

                                                                                                            cGGATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGtt                         <  1:2849079/140‑1 (MQ=255)

                                                                                                              gATGTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTa                       >  1:4902777/1‑140 (MQ=255)

                                                                                                                 gTAATTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacg                    <  2:1479844/140‑1 (MQ=255)

                                                                                                                    aTTAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgcca                 >  1:2415828/1‑140 (MQ=255)

                                                                                                                      tAACAACAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacg               <  1:2246779/140‑1 (MQ=255)

                                                                                                                       aaccacAGGTTACACACCCTACACCTGCATCCTCATCACTTCCTGATACGCCGCCACCAGGTTATTACGCCCCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATCTCGGTCATCACATCGTTTAacgccacgc              <  2:3974437/140‑1 (MQ=255)

                                                                                                                       aacaacAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacgc              <  1:1087809/140‑1 (MQ=255)

                                                                                                                       aacaacAGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacgc              <  1:1256690/140‑1 (MQ=255)

                                                                                                                         caacaGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATc                                        >  1:616155/1‑112 (MQ=255)

                                                                                                                         caacaGGTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATc                                        <  2:616155/112‑1 (MQ=255)

                                                                                                                               gTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCa      >  2:5114448/1‑140 (MQ=255)

                                                                                                                               gTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCa      >  1:1750330/1‑140 (MQ=255)

                                                                                                                               gTTACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCa      >  1:312441/1‑140 (MQ=255)

                                                                                                                                 tACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCAcc    <  2:2629476/140‑1 (MQ=255)

                                                                                                                                 tACAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCAcc    <  2:3913019/140‑1 (MQ=255)

                                                                                                                                   cAAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCga  >  1:683599/1‑140 (MQ=255)

GTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGA  >  NZ_CP025268/2016603‑2016873

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`