BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	2,457,300	T→C	pseudogene (1737/2646 nt)	yfcU ←	fimbrial usher protein YfcU

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	2,457,300	0	T	C	100.0%	1245.7 / NA	368	pseudogene (1737/2646 nt)	yfcU	fimbrial usher protein YfcU
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (172/196); total (172/196)

Only 100 of 368 total aligned reads displayed.

GTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATTTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGTCTGCTCCTCACGATCCCAGT  >  NZ_CP025268/2457163‑2457436

  gCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACa                                                                                                                                      <  1:1979021/140‑1 (MQ=255)

   ccGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACAt                                                                                                                                     >  2:4725269/1‑140 (MQ=255)

     gATGTTCAACTGATAGTGCGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGc                                                                                                                                   <  2:3902292/140‑1 (MQ=255)

      aTGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCCAAATCTACATGcc                                                                                                                                  >  1:4570317/1‑140 (MQ=255)

        gTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCt                                                                                                                                >  1:5052026/1‑140 (MQ=255)

           cAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTAt                                                                                                                             >  1:1447517/1‑140 (MQ=255)

                gATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGcc                                                                                                                        <  2:672652/140‑1 (MQ=255)

                 aTAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGccc                                                                                                                       <  1:4585915/140‑1 (MQ=255)

                 aTAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGccc                                                                                                                       >  2:39379/1‑140 (MQ=255)

                   aGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCgg                                                                                                                     <  1:3645428/140‑1 (MQ=255)

                   aGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCgg                                                                                                                     <  1:1844163/140‑1 (MQ=255)

                   aGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCgg                                                                                                                     >  2:2111087/1‑140 (MQ=255)

                        gTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTc                                                                                                                >  1:3377179/1‑140 (MQ=255)

                         tCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCa                                                                                                               >  1:4120134/1‑140 (MQ=255)

                            cgTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATAc                                                                                                            >  2:4400850/1‑140 (MQ=255)

                            cgTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGGACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATAc                                                                                                            >  1:1116236/1‑140 (MQ=255)

                             gtgaTCGCCACGGCTAAAATACCCGCCCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTACCGGCACTTTTTTCTCATGATACGGCA‑AC‑CAGCGAGATCTACACGCCCTTATCCGCCCGGTTGTCATACt                                                                                                           <  2:2623033/137‑1 (MQ=255)

                               cATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATTGCTAACGGTCCTGTTGTCGC‑‑CCCACGTCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCg                                                                                                         <  1:3454929/140‑1 (MQ=255)

                                 tCGCCACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCAGAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTa                                                                                                       >  1:12138/1‑140 (MQ=255)

                                 tCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTa                                                                                                       <  2:781660/140‑1 (MQ=255)

                                  cGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAg                                                                                                      <  1:1667128/140‑1 (MQ=255)

                                      acGGCTAAAATACCCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGt                                                                                                  <  2:1169043/140‑1 (MQ=255)

                                         gCTAAAATAACCGACCTGGCTGCTTTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGc                                                                                               <  2:1405120/140‑1 (MQ=255)

                                          cTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGcc                                                                                              >  2:4231681/1‑140 (MQ=255)

                                                   ccGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGa                                                                                     >  1:262470/1‑140 (MQ=255)

                                                   ccGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGa                                                                                     >  1:2259693/1‑140 (MQ=255)

                                                       ccTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACg                                                                                 <  2:411446/140‑1 (MQ=255)

                                                       ccTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACg                                                                                 <  1:3048571/140‑1 (MQ=255)

                                                         tGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCt                                                                               <  1:4658997/140‑1 (MQ=255)

                                                         tGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCt                                                                               <  1:48079/140‑1 (MQ=255)

                                                         tGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCt                                                                               <  1:3507077/140‑1 (MQ=255)

                                                         tGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCt                                                                               <  2:2303263/140‑1 (MQ=255)

                                                            ctgctgTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCat                                                                            <  1:3082016/140‑1 (MQ=255)

                                                            ctgctgTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCat                                                                            <  2:4963197/140‑1 (MQ=255)

                                                                tgTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTa                                                                        >  2:3203409/1‑140 (MQ=255)

                                                                  tccgtccCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACg                                                                      >  1:1729173/1‑140 (MQ=255)

                                                                    cgtccCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGaa                                                                    >  1:1010919/1‑140 (MQ=255)

                                                                    cgtccCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGaa                                                                    >  2:54699/1‑140 (MQ=255)

                                                                     gtccCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAAt                                                                   >  1:2294618/1‑140 (MQ=255)

                                                                       cccACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAAtgc                                                                 <  2:1447517/140‑1 (MQ=255)

                                                                           cTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGACACGCTCATATTACGAATGCTGcc                                                             <  1:692719/140‑1 (MQ=255)

                                                                           cTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGcc                                                             <  2:3521248/140‑1 (MQ=255)

                                                                           cTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGcc                                                             <  2:4553589/140‑1 (MQ=255)

                                                                            tGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGccc                                                            >  1:403093/1‑140 (MQ=255)

                                                                            tGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGccc                                                            >  1:3118526/1‑140 (MQ=255)

                                                                            tGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGccc                                                            >  2:3383954/1‑140 (MQ=255)

                                                                            tGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCAACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCAGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCAGATTACGAATGCTGccc                                                            >  1:2866821/1‑140 (MQ=255)

                                                                                   gTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGa                                                     <  1:3308050/140‑1 (MQ=255)

                                                                                   gTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGa                                                     <  1:2158508/140‑1 (MQ=255)

                                                                                    ttGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACa                                                                                                                                      >  2:5054279/1‑58 (MQ=255)

                                                                                    ttGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGaa                                                    <  2:1089144/140‑1 (MQ=255)

                                                                                        cGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAACTCTACATGCCCTTATCAGCCCGGTTGTCATACTCGTAGCGGAAGCCAGTCAGGGAAACTCTCACATTACGAATGCCGCCCATATTGAAATAg                                                >  2:3755852/1‑140 (MQ=255)

                                                                                        cGTTATAGCTAACGGTACGGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCGCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAGTGCTGCCCAAGTTGAAATAg                                                >  1:1296567/1‑140 (MQ=255)

                                                                                           tatcGCTAACGGTACTGTTGTCGT‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGTCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATAGTACGAATGCTGCCCATATGGAAATAGTgg                                             <  2:3074429/140‑1 (MQ=255)

                                                                                           tataGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTgg                                             <  1:1930662/140‑1 (MQ=255)

                                                                                           tataGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTgg                                             <  2:1652556/140‑1 (MQ=255)

                                                                                           tataGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTgg                                             <  2:3620528/140‑1 (MQ=255)

                                                                                            ataGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAGACGCTCATATTACGAATGCTGCCCATATTGAAATAGTggg                                            >  1:4784710/1‑140 (MQ=255)

                                                                                             taGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGga                                           <  2:2415177/140‑1 (MQ=255)

                                                                                             taGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGga                                           <  1:1048098/140‑1 (MQ=255)

                                                                                             taGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGga                                           <  1:953593/140‑1 (MQ=255)

                                                                                                cTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGagag                                        >  1:213345/1‑140 (MQ=255)

                                                                                                  aaCGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCa                                      <  1:2084810/140‑1 (MQ=255)

                                                                                                  aaCGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCa                                      <  1:2366063/140‑1 (MQ=255)

                                                                                                  aaCGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCa                                      <  1:3557217/140‑1 (MQ=255)

                                                                                                  aaCGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCa                                      >  1:3823538/1‑140 (MQ=255)

                                                                                                   aCGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTAt                                                                                                                             >  1:1498040/1‑52 (MQ=255)

                                                                                                    cGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCatg                                    >  2:4026599/1‑140 (MQ=255)

                                                                                                    cGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCAGATTGAAATAGTGGGAGAGCatg                                    >  2:4092411/1‑140 (MQ=255)

                                                                                                        aCTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGAtgt                                <  2:2168421/140‑1 (MQ=255)

                                                                                                         cTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGAtgtt                               >  2:513997/1‑140 (MQ=255)

                                                                                                         cTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGAtgtt                               >  1:4396278/1‑140 (MQ=255)

                                                                                                            ttgtCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCGGCCCATATTGAAAGAGTGGGAGAGCATGATGTTGTa                            >  2:1769816/1‑140 (MQ=255)

                                                                                                             tgtCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAg                           <  1:99513/140‑1 (MQ=255)

                                                                                                               tCGC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGtt                         >  1:1398983/1‑140 (MQ=255)

                                                                                                                 gC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCa                                      >  2:2060859/1‑125 (MQ=255)

                                                                                                                 gC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTg                       >  2:1488569/1‑140 (MQ=255)

                                                                                                                 gC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTg                       >  1:3271612/1‑140 (MQ=255)

                                                                                                                 gC‑‑CCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTg                       >  1:1557813/1‑140 (MQ=255)

                                                                                                                  c‑‑cccACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGt                      <  1:4932121/140‑1 (MQ=255)

                                                                                                                  c‑‑cccACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGt                      <  2:279754/140‑1 (MQ=255)

                                                                                                                   gctccACGGCATACTGAGTGAAATCTACATTCCCTTATCCGCCCGGTTGTCATACTCGTAGCGTTAGCCAGTCAGGGAAACGCGAATATTACGAATGCTGCCCATATTGAAATAGTTGGAGAGCATGCTGTGGTAGTTTg                       >  2:1279368/4‑140 (MQ=255)

                                                                                                                       cACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGTCTg                   <  2:2754819/140‑1 (MQ=255)

                                                                                                                       cACGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGTCTg                   <  1:2384335/140‑1 (MQ=255)

                                                                                                                         cGGCATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGTCTGct                 <  1:4197232/140‑1 (MQ=255)

                                                                                                                            cATACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGAGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGCGCATGATGTTGTCGTTTGTCTGctccc              >  2:1866945/1‑139 (MQ=255)

                                                                                                                              tACTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGTCTGCTCCTCa            <  1:3196523/140‑1 (MQ=255)

                                                                                                                               aCTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTAATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGTCTGCTCCTCAc           <  2:4647146/140‑1 (MQ=255)

                                                                                                                                ttGAGCGAAATCTACATGCCCTTACCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGTCTGCTCCTCACg          <  2:4471716/139‑1 (MQ=255)

                                                                                                                                cTGAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGTCTGCTCCTCACg          <  2:1962974/140‑1 (MQ=255)

                                                                                                                                  gAGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGTCTGCTCCTCACGAt        <  1:160671/140‑1 (MQ=255)

                                                                                                                                   aGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGTCTGCTCCTCACGATc       >  1:24948/1‑140 (MQ=255)

                                                                                                                                   aGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATGACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGTCTGCTCCTCACGATc       >  2:4907800/1‑140 (MQ=255)

                                                                                                                                   aGCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCCCATATTACGAATGCTGCCCATATTCAAATAGTGGGAGAGCATGGAGTTGTAGATTGTCTGCTCCTCACGATc       >  2:421890/1‑140 (MQ=255)

                                                                                                                                    gCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGTCTGCTCCTCACGATcc      >  1:4674566/1‑140 (MQ=255)

                                                                                                                                    gCGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGGAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGTATGATGTTGTAGTTTGTCTGCTCCTCACGATcc      >  2:2860626/1‑140 (MQ=255)

                                                                                                                                     cGAAATCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGTCTGCTCCTCACGATccc     <  1:298416/140‑1 (MQ=255)

                                                                                                                                       aaaTCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGTCTGCTCCTCACGATCCCAg   <  1:582718/140‑1 (MQ=255)

                                                                                                                                       aaaTCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGTCTGCTCCTCACGATCCCAg   <  2:3288238/140‑1 (MQ=255)

                                                                                                                                        aaTCTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGTCTGCTCCTCACGATCCCAGt  >  1:522095/1‑140 (MQ=255)

GTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGC‑‑CCCACGGCATACTGAGCGAAATTTACATGCCCTTATCCGCCCGGTTGTCATACTCGTAGCGGTAGCCAGTCAGGGAAACGCTCATATTACGAATGCTGCCCATATTGAAATAGTGGGAGAGCATGATGTTGTAGTTTGTCTGCTCCTCACGATCCCAGT  >  NZ_CP025268/2457163‑2457436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`