| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,790,751 | A→G | pseudogene (333/2252 nt) | CXP41_RS24390 → | alpha‑amylase family glycosyl hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,790,751 | 0 | A | G | 99.4% | 549.1 / NA | 165 | pseudogene (333/2252 nt) | CXP41_RS24390 | alpha‑amylase family glycosyl hydrolase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (110/54); minor base C (0/1); total (110/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 165 total aligned reads displayed.
AAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGA‑TA‑AATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAA > NZ_CP025268/2790620‑2790884 | aaaGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTCGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATACGTTTATCa < 2:3674643/140‑1 (MQ=255) attaATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACgaga < 1:595108/140‑1 (MQ=255) attaATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACgaga > 1:3329293/1‑140 (MQ=255) aTCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑Tacaatg < 2:3215016/140‑6 (MQ=255) tCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATCCAACTTACCGAGAGTTGAATAAAGCAGCACCGCGTAGCATTACAGCGCCAGACAGGATAGTAGAAAGAAAAACATAGGTTTATCAACGAGA‑Tacactgc > 1:4596833/1‑134 (MQ=255) tCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGa > 1:1676212/1‑140 (MQ=255) gTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTg < 1:3771629/140‑1 (MQ=255) ttAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGa > 1:1509038/1‑140 (MQ=255) ttAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGa > 1:1213774/1‑140 (MQ=255) aaaaaaCGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGaaa < 2:662520/140‑1 (MQ=255) aaaCGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAagag > 2:37666/1‑140 (MQ=255) cGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTg > 1:1266285/1‑140 (MQ=255) aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATCAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGAt > 2:4102065/1‑140 (MQ=255) aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGCAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGAt > 1:4172825/1‑140 (MQ=255) aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGAt > 1:2753647/1‑140 (MQ=255) aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGAt > 2:3897490/1‑140 (MQ=255) aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGAt > 2:4370195/1‑140 (MQ=255) aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGAt > 1:55085/1‑140 (MQ=255) aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGAt > 1:4850470/1‑140 (MQ=255) aTTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGAt > 1:4748980/1‑140 (MQ=255) aTTATAAAATTTCCCTTTCACCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATGGAAAGAGGTGAt > 1:2753662/1‑140 (MQ=255) aaaaTTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCATACAGGATATGAGAAAGAAAAACATAGGTTTATCTACGATA‑TACAATGATTGAAAGAGGTGATAACAg < 2:4557644/140‑1 (MQ=255) aaTTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCg < 1:2597732/140‑1 (MQ=255) tttCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTAt < 1:1956364/140‑1 (MQ=255) tctcCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCa > 2:2194264/1‑140 (MQ=255) tctcCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCa > 2:702175/1‑140 (MQ=255) aTACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGt > 2:2892068/1‑140 (MQ=255) aCAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCg < 1:4974750/140‑1 (MQ=255) aaCTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTg > 2:3470681/1‑140 (MQ=255) aCTTACCGACAGCTGAATAAAGCATCACAGCGTCGCATTACAGCGCCAGAAAGGATAGGAGAAAGAAAAAGATAGGTTTATCAACGAGA‑TACCATGATGGAAAGAGGTGATAACAGCGTTGGTTAGCAGTATGGTCGTGc > 2:1189515/1‑140 (MQ=255) ttACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTg < 1:1747247/140‑1 (MQ=255) ttACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTg < 2:4854237/140‑1 (MQ=255) aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGttt > 2:2951274/1‑120 (MQ=255) aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGttt < 1:2951274/120‑1 (MQ=255) aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa < 2:420034/140‑1 (MQ=255) aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa > 2:381882/1‑140 (MQ=255) aCCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGaa > 1:4015007/1‑140 (MQ=255) ccGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGCTAGGAGAAAGAAAAAAATAGGTTTATCAAAGAGA‑TACAATGATCGAAAGAGGTGATAAGAGCGGTGTTTATCAGTATGGTCGTGCGGAAc > 2:1884131/1‑140 (MQ=255) ccGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATTAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAAc < 1:3797041/140‑1 (MQ=255) cGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACa > 1:3435493/1‑140 (MQ=255) gagTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACAttt > 1:692006/1‑140 (MQ=255) gTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCa > 1:313278/1‑140 (MQ=255) ttGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAc > 1:4472598/1‑140 (MQ=255) tGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAcc < 2:5084976/140‑1 (MQ=255) tGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAcc < 1:3399448/140‑1 (MQ=255) gAATAAAGCAGCAGAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAccc < 2:4463888/140‑1 (MQ=255) gAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAccc > 1:956724/1‑140 (MQ=255) aaTAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCca > 1:4137293/1‑140 (MQ=255) tAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCcaca < 2:1676212/140‑1 (MQ=255) agcagcACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATta > 1:3899957/1‑140 (MQ=255) agcagcACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATta > 2:792021/1‑140 (MQ=255) agcagcACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATta > 2:3168197/1‑140 (MQ=255) agcagcACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATta > 2:1556493/1‑140 (MQ=255) agcagcACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATta > 1:662173/1‑140 (MQ=255) gcccgCGTCGCATTGCACCGCCAGACAGGATAGGAGAAAGAAATACATAGTCTCATCAGCGAGACCC‑CATGATAGAAAGAGGGGAGAACAGCGACGGTAAGCAGTATGGTCGTGCCGAACATTTCACCCACATCACATCt > 2:4751742/5‑140 (MQ=255) cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGC‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt > 1:135870/1‑140 (MQ=255) cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCAcc > 2:3724831/1‑128 (MQ=255) cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCCCATTATATCt > 1:135578/1‑140 (MQ=255) cacaGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCt > 1:4372811/1‑140 (MQ=255) cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCg > 2:4744493/1‑88 (MQ=255) cGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACaa > 2:1981620/1‑140 (MQ=255) cGTAGCATTACAGCGCAAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAAAGAGA‑TAGAATGATGGAAAGAGGTGATGACAGCGGTGTTTATCAGTATGATAGAACTGAACATTGCATCCACATTATATCTGACaa > 2:843196/1‑140 (MQ=255) tAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAAc > 2:5007582/1‑140 (MQ=255) tAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAAc > 1:787144/1‑140 (MQ=255) cATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCtt > 1:2021630/1‑140 (MQ=255) cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGGTTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa > 1:4576749/1‑140 (MQ=255) cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTa < 1:513799/91‑1 (MQ=255) cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa > 2:2895746/1‑140 (MQ=255) cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa > 1:4301875/1‑140 (MQ=255) cAGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa > 2:3894658/1‑140 (MQ=255) aGCGTCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaa < 2:3374625/140‑1 (MQ=255) aGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaa < 1:3622207/140‑1 (MQ=255) aGCGCCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaa < 2:4015007/140‑1 (MQ=255) cgcCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGttt > 1:2144246/1‑81 (MQ=255) cgcCAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCaaaa > 1:3267117/1‑140 (MQ=255) ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGAt < 2:5131981/53‑1 (MQ=255) ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGAt < 2:5131910/53‑1 (MQ=255) ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGAt > 1:5131910/1‑53 (MQ=255) ccAGACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGa > 1:2474663/1‑140 (MQ=255) gACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATaa > 2:4001363/1‑140 (MQ=255) gACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATaa > 2:5176516/1‑140 (MQ=255) gACAGGATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATaa < 2:5008917/140‑1 (MQ=255) gATAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATg < 2:3089945/140‑1 (MQ=255) gATAGGAGAAAGAAAAACATAGGTTTATAAACGAGG‑GAGAATGATGGAAAGAAGTAATAACAGCGGTGTTTATAAGAAGGGTCGAGCTGAACAAATCAAGCACATTATATCTGAAAGAAGTTCAACAAAAGATaaaaagg > 2:3026064/1‑136 (MQ=255) aTAGGAGAAAGAAAAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGt > 1:1797608/1‑140 (MQ=255) agaaagaaAAACATAGGTTTATCAACGAGA‑TACAATGGTTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCat < 2:4576749/140‑1 (MQ=255) gaaagaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata < 1:4374375/140‑1 (MQ=255) cgaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 2:1678048/2‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa > 2:2492604/1‑117 (MQ=255) agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCa < 1:2492604/117‑1 (MQ=255) agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCatattc > 2:926027/1‑138 (MQ=255) agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCata > 2:621471/1‑137 (MQ=255) agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 1:503230/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 2:3469367/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 2:3544528/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 1:881983/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCGGACAAACCTTCCCCAAAAGATAAATAGGTTGCATATGc > 2:2245465/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACAGTTCTCCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 1:3699450/1‑140 (MQ=255) agaaaAACATAGGTTTATCAACGAGA‑TACAAGGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGc > 2:2245981/1‑140 (MQ=255) gaaaAACATAGGTTTATCAACGAGA‑TACAATGATTGAAAGAGGCGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCt < 1:4743529/140‑1 (MQ=255) | AAAGTTATTAATGATCTGTTAAAAAACGATTATAAAATTTCCCTTTCTCCAGATACAACTTACCGAGAGTTGAATAAAGCAGCACAGCGTAGCATTACAGCGCCAGACAGGATAGGAGAAAGAAAAACATAAGTTTATCAACGAGA‑TA‑AATGATTGAAAGAGGTGATAACAGCGGTGTTTATCAGTATGGTCGTGCTGAACATTTCACCCACATTATATCTGACAAACCTTCCCCAAAAGATAAATATGTTGCATATGCTATTAA > NZ_CP025268/2790620‑2790884 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |