| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,864,419 | T→C | pseudogene (1103/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,864,419 | 0 | T | C | 99.7% | 1044.3 / NA | 308 | pseudogene (1103/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (144/163); minor base A (0/1); total (144/164) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 308 total aligned reads displayed.
TGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCC‑G‑C‑CATGTTCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAA > NZ_CP025268/3864283‑3864554 | cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑c < 2:3688623/140‑1 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑c < 2:303647/140‑1 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑c < 2:682179/140‑1 (MQ=255) aaTCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑c‑cca > 2:5111105/1‑138 (MQ=255) aaTCAGTGTGCGGAAAACCACGAAGTACAGCAGGCTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGTGGTAAAACCTAGTCAATCAGACCTCC‑G‑c‑cca < 2:3957908/140‑3 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCTATGGCGATTTGCGCCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑c‑ccatg < 1:4307394/140‑5 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑c‑ccatg < 2:1423673/140‑5 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑c‑ccatg > 2:1749676/1‑136 (MQ=255) aGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGtt > 2:2913608/1‑140 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTg > 1:4858414‑M1/1‑139 (MQ=255) gtgtGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTCTTGCGGTAAACCCTAGTCAATCAGACCCCC‑G‑c‑ccatttta > 2:2673535/1‑133 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcc < 1:5074650‑M1/140‑4 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgccca < 1:2385655‑M1/140‑6 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccac > 2:214356‑M1/1‑134 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccac < 1:1288172‑M1/140‑7 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccac < 1:636411‑M1/140‑7 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccac < 1:4965319‑M1/140‑7 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACAGCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccac < 2:663785‑M1/140‑7 (MQ=255) ggAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccacc < 2:2825798‑M1/140‑8 (MQ=255) aaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacac < 1:4404128‑M1/140‑12 (MQ=255) aaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacac < 2:4892252‑M1/140‑12 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacacc > 2:2256813‑M1/1‑128 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacacca < 2:1233114‑M1/140‑14 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacacca < 2:58570‑M1/140‑14 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacacca < 1:3295897‑M1/140‑14 (MQ=255) ccgAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaa < 2:405793‑M1/139‑16 (MQ=255) aCGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaa < 1:2769416‑M1/140‑16 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaag < 1:2592865‑M1/140‑17 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaag < 1:1675476‑M1/140‑17 (MQ=255) cGAAGTACAGCAGCGTAAAGCACAACCCAATGGCGATTTGGGACAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaag < 2:4378877‑M1/140‑17 (MQ=255) aaGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagag < 2:2185267‑M1/140‑19 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagaga < 1:3171668‑M1/140‑20 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagaga < 1:4219562‑M1/140‑20 (MQ=255) cagcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagataca < 1:1986497‑M1/140‑24 (MQ=255) gcagGGTACAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacatt < 1:285166‑M1/140‑26 (MQ=255) cagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacatta > 1:463772‑M1/1‑114 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacgg > 1:3084588‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacgg > 2:5206661‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGGCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaaaagatacattacgg > 1:1496855‑M1/1‑111 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggt < 1:4490396‑M1/140‑31 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggt < 2:2031436‑M1/140‑31 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGtt < 1:2961710/109‑1 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtc > 1:1711270‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtc > 1:692683‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtc > 2:119457‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcc < 2:105975‑M1/112‑4 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcc > 1:105975‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGGCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAGCCTGGTCAATCAGACCTCCGG‑C‑CATGTTgcccaccacaccaaagaggtacattacggtc > 2:2719891‑M1/1‑109 (MQ=255) aaaGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑CACATGTTgcccaccacaccaaagagatacattacggtcg < 2:2565972‑M1/140‑33 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgac > 1:1550837‑M1/1‑106 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgac > 2:1908950‑M1/1‑106 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagcgatacattacggtcgacattga > 1:2304714‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattga > 1:2288697‑M1/1‑101 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgag < 2:3343184‑M1/140‑41 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgagg > 1:3775910‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgaca < 1:2623651‑M1/134‑36 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgaca > 2:2624183‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACAACGGGATCCAGTTTTGCGGTAAAACCTAGTCAAGCAGACCTCC‑GCC‑CAGGTTgcctaccacaccaaagagatacattacgggcgacattgagg > 1:1649269‑M1/1‑99 (MQ=255) ccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggc < 1:142291‑M1/140‑43 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcc > 1:3862198‑M1/1‑94 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:2418977‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:1591518‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:2204598‑M1/140‑50 (MQ=255) gATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagca < 2:820484‑M1/140‑51 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACTTCGGGATCCAGTTTTGCACTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccagcacaccaaagagatacattacggtcgacattcaggccgccagcac > 2:4501740‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 2:3633994‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacgctcgacattgaggccgccagcac > 1:3342239‑M1/1‑89 (MQ=255) tGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc < 2:2463567‑M1/140‑55 (MQ=255) cAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgta < 2:3013499‑M1/140‑60 (MQ=255) gCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtacc > 1:4457640‑M1/1‑79 (MQ=255) gCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtacc < 2:3932310‑M1/140‑62 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 1:100066‑M1/1‑73 (MQ=255) tCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacag < 1:5206661‑M1/140‑70 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGCCCTCC‑TCC‑CATGTTgcccaccacaccaaagaaatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa < 2:481880‑M1/140‑73 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:3877896‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 2:2336977‑M1/132‑65 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacagtacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 2:3248442‑M1/1‑68 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcccggcgtgtaccgcaaacagcaac > 1:2691014‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 1:876972‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 2:3529966‑M1/1‑67 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagatatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaaccgcaacg < 2:1116081‑M1/140‑75 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAACAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg > 2:1650450‑M1/1‑66 (MQ=255) tGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacgg > 1:3606988‑M1/1‑65 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg < 1:4418391‑M1/140‑78 (MQ=255) tGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaa < 1:5054513‑M1/140‑80 (MQ=255) tGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaa < 2:4653473‑M1/140‑80 (MQ=255) tGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaa < 1:4037054‑M1/140‑80 (MQ=255) cTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaacgagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaat < 2:4563546‑M1/140‑82 (MQ=255) aaCATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaa < 1:3393748‑M1/140‑85 (MQ=255) aaCATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaa < 1:4753055‑M1/140‑85 (MQ=255) tCGGGCTCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg < 2:1982195‑M1/140‑89 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg < 1:2650023‑M1/140‑89 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 2:896632‑M1/1‑52 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg < 1:3984962‑M1/140‑89 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 2:1713409‑M1/1‑52 (MQ=255) cGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga < 1:119457‑M1/140‑90 (MQ=255) ttttGCGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattc > 1:327324‑M1/1‑41 (MQ=255) cGGTAAAACCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcg > 1:2353348‑M1/1‑36 (MQ=255) ggTAAAACCTAGTCAATCAGACCGCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:1765475‑M1/140‑106 (MQ=255) aaCCTAGTCAATCAGACCTCC‑GCC‑CATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcgg < 1:4105878‑M1/140‑111 (MQ=255) | TGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCC‑G‑C‑CATGTTCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAA > NZ_CP025268/3864283‑3864554 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |