BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,629,176	(T)_7→8	pseudogene (141/392 nt)	ydeI ←	YdeI family stress tolerance OB fold protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,629,169	1	.	T	96.2%	598.1 / 11.8	160	pseudogene (148/392 nt)	ydeI	YdeI family stress tolerance OB fold protein
Reads supporting (aligned to +/- strand): ref base . (1/5); new base T (35/119); total (36/124)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 167 total aligned reads displayed.

GCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CA‑TT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAA  >  NZ_CP025268/1629034‑1629300

gCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CA‑ttgt                                                                                                                                   >  2:1857602/1‑138 (MQ=255)

gCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CA‑tt‑t‑t                                                                                                                                 >  1:565158/1‑140 (MQ=255)

    cAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CA‑tt‑t‑ttttt                                                                                                                             <  2:3848825/140‑2 (MQ=255)

       gAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CA‑tt‑t‑tttttgca                                                                                                                          >  1:4905992/1‑136 (MQ=255)

            aCGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCatcatc                                                                                                                      <  1:4143786/140‑1 (MQ=255)

              gACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCgg                                                                                                                    <  1:2049602/140‑1 (MQ=255)

                  ttAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTcc                                                                                                                >  2:2066386/1‑140 (MQ=255)

                  ttAATGTCACCGCTCTTATCGGGAGAAACGTAAGGGTACTCGCCTTTGTGAGAAATCAAATTAACGGGTAGTGAAACCGAAGCGGCATGGTGCAGGGTTTTTGCGAGATGAACGGT‑CA‑TTGT‑GGTTGGGTCATCGGTTcg                                                                                                                >  2:4700069/1‑139 (MQ=255)

                      tttCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGa                                                                                                            <  2:1912627/140‑1 (MQ=255)

                         cACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCCTCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAg                                                                                                         <  1:2644380/140‑1 (MQ=255)

                         cACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAg                                                                                                         <  1:2548162/140‑1 (MQ=255)

                         cACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAg                                                                                                         <  1:1377750/140‑1 (MQ=255)

                         cACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAg                                                                                                         <  2:242485/140‑1 (MQ=255)

                         aaCCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAg                                                                                                         <  1:4733008/139‑1 (MQ=255)

                           cgcctctCATCGCGAAAAACGTAACGGTCCCCTCCTTTGCGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGCAATCAACGGT‑CA‑TT‑TATTTTGCATCATCGCTTCCGCGATAGcc                                                                                                       <  2:3098911/137‑1 (MQ=255)

                           ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGcc                                                                                                       <  1:5315212/140‑1 (MQ=255)

                           ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGcc                                                                                                       >  1:1874371/1‑140 (MQ=255)

                           ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGcc                                                                                                       <  1:1955051/140‑1 (MQ=255)

                           ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGcc                                                                                                       <  1:2732551/140‑1 (MQ=255)

                           ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGcc                                                                                                       <  1:1954755/140‑1 (MQ=255)

                           ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGcc                                                                                                       <  2:1728470/140‑1 (MQ=255)

                           ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGcc                                                                                                       >  2:3424701/1‑140 (MQ=255)

                           ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGcc                                                                                                       <  2:843283/140‑1 (MQ=255)

                           ccGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAACCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGcc                                                                                                       <  2:4761633/140‑1 (MQ=255)

                            cGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCa                                                                                                      <  1:3502623/140‑1 (MQ=255)

                             gCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCAt                                                                                                     <  2:1640252/140‑1 (MQ=255)

                              ctctTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGATACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCAtc                                                                                                    <  2:5054953/140‑1 (MQ=255)

                                  tATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCAtcttct                                                                                                <  1:4923446/140‑1 (MQ=255)

                                   aTCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTa                                                                                               <  2:565643/140‑1 (MQ=255)

                                   aTCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTa                                                                                               <  2:565158/140‑1 (MQ=255)

                                   aTCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTa                                                                                               >  1:1914839/1‑140 (MQ=255)

                                   aTCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTa                                                                                               <  1:3063813/140‑1 (MQ=255)

                                        gAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAGTCCACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCa                                                                                          <  2:4242352/140‑1 (MQ=255)

                                        gAAAAACGTAACGGTCCTCGCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCa                                                                                          <  2:4322794/140‑1 (MQ=255)

                                        gAAAAACGTAACGCTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCa                                                                                          <  2:1697418/140‑1 (MQ=255)

                                                tAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAggcgg                                                                                  <  1:4246512/140‑1 (MQ=255)

                                                   cGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGcggcgg                                                                               <  1:1384815/140‑1 (MQ=255)

                                                    ggTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGt                                                                              <  2:2127605/140‑1 (MQ=255)

                                                     gTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACTGAACCGCCATCGTGCATGGTTATTTCGAAATCAACGGT‑AA‑TT‑TGTATTGCATCATCGGTTCCGCGAGAGCGATATTCTATTGCATGAGGCGGCGGTg                                                                             <  1:3195434/140‑1 (MQ=255)

                                                     gTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTg                                                                             <  1:4122833/140‑1 (MQ=255)

                                                      tCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTGTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTgg                                                                            >  1:1191035/1‑140 (MQ=255)

                                                       ccTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGgc                                                                           <  1:3602706/140‑1 (MQ=255)

                                                        ctctCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGgcg                                                                          >  2:1187442/1‑140 (MQ=255)

                                                        ctctCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGgcg                                                                          <  1:718607/140‑1 (MQ=255)

                                                               ttGTGAGAAATCAAATTCCCGCGTAGTGACACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                   <  1:2933453/140‑1 (MQ=255)

                                                               ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                   <  1:2112329/140‑1 (MQ=255)

                                                               ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                   <  1:3664967/140‑1 (MQ=255)

                                                               ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                   <  2:4905992/140‑1 (MQ=255)

                                                               ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                   <  2:2463455/140‑1 (MQ=255)

                                                               ttGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTCTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                   <  1:4780051/140‑1 (MQ=255)

                                                                tgtgAGAAATCAAATTACCGCGTCGTGAAACCGACGCGCCATCGTGCATGGTTTTTGCGCAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATcc                                                                  >  2:4584978/1‑140 (MQ=255)

                                                                tgtgAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATcc                                                                  >  2:4013385/1‑140 (MQ=255)

                                                                tgtgAGAAATCAAATTACCGCGGAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATcc                                                                  >  1:4069803/1‑140 (MQ=255)

                                                                   gagaAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGt                                                               >  2:1219404/1‑140 (MQ=255)

                                                                     gaAATCAAATTACCGCGTAGTGAAACCGAATCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                   <  1:5274247/134‑1 (MQ=255)

                                                                     gaAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                   >  2:5274247/1‑134 (MQ=255)

                                                                       aaTCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTa                                                           >  1:567862/1‑140 (MQ=255)

                                                                         tCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTaaa                                                         >  2:1043640/1‑140 (MQ=255)

                                                                         tCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTaaa                                                         <  1:4674095/140‑1 (MQ=255)

                                                                          cAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAAc                                                        <  1:4101057/140‑1 (MQ=255)

                                                                          cAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAAc                                                        <  1:5156098/140‑1 (MQ=255)

                                                                           aacttACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCCTCCTGTTTTAAccc                                                       <  2:1819157/137‑1 (MQ=255)

                                                                            aaTTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCg                                                      <  1:1052698/140‑1 (MQ=255)

                                                                              ttACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGcc                                                    <  2:3415939/140‑1 (MQ=255)

                                                                              ttACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGcc                                                    <  2:3254792/140‑1 (MQ=255)

                                                                               tACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGccc                                                   <  2:301809/140‑1 (MQ=255)

                                                                               tACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGccc                                                   <  1:701000/140‑1 (MQ=255)

                                                                                aCCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCt                                                  <  2:1428405/140‑1 (MQ=255)

                                                                                      tAGTGAAACCGAAGCGCCATCCTGCATGGTTTTTGCGAAATCACCGGT‑CATTT‑T‑TTTTGCCTCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCAt                                            <  2:1065270/140‑1 (MQ=255)

                                                                                       aGTGACACCGCAGCGCCATCGTGCATGGTTTTTGCGAAATCCACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATc                                           <  2:599377/140‑1 (MQ=255)

                                                                                         tGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATc                                                                   >  1:2708993/1‑114 (MQ=255)

                                                                                          gAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGc                                        <  1:756720/140‑1 (MQ=255)

                                                                                           aaaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACTGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGcc                                       <  1:4916209/140‑1 (MQ=255)

                                                                                           aaaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGcc                                       <  1:1025705/140‑1 (MQ=255)

                                                                                           aaaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGcc                                       <  1:2900536/140‑1 (MQ=255)

                                                                                            aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATTAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa                                      <  2:1973045/140‑1 (MQ=255)

                                                                                            aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa                                      <  1:245284/140‑1 (MQ=255)

                                                                                            aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa                                      <  1:1815173/140‑1 (MQ=255)

                                                                                            aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa                                      <  1:177735/140‑1 (MQ=255)

                                                                                            aaCCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCa                                      <  1:3661905/140‑1 (MQ=255)

                                                                                            aaCCGAAGCGCCATCGTCCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCAGCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAATCCGCCCTGGTCATCTGCCa                                      <  2:3630822/140‑1 (MQ=255)

                                                                                             aacGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCaa                                     <  1:3258308/138‑1 (MQ=255)

                                                                                                 aaGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCa                                 <  2:2508001/140‑1 (MQ=255)

                                                                                                  aGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCAt                                <  1:3429374/140‑1 (MQ=255)

                                                                                                   gcgcCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATa                               >  1:3304246/1‑140 (MQ=255)

                                                                                                         tCGTGCATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCAt                         <  1:3338538/140‑1 (MQ=255)

                                                                                                              cATGGTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACaa                    >  2:1185943/1‑140 (MQ=255)

                                                                                                                 ggTTTTTGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaa                 <  1:2507574/140‑1 (MQ=255)

                                                                                                                   tttttGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa               <  2:53732/140‑1 (MQ=255)

                                                                                                                   tttttGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa               <  1:2305052/140‑1 (MQ=255)

                                                                                                                   tttttGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa               <  2:1126951/140‑1 (MQ=255)

                                                                                                                   tttttGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa               <  2:1635974/140‑1 (MQ=255)

                                                                                                                   tttttGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa               <  2:2542611/140‑1 (MQ=255)

                                                                                                                   tttttGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGaaaa               <  1:5108743/140‑1 (MQ=255)

                                                                                                                      ttGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACtt            >  1:4270453/1‑140 (MQ=255)

                                                                                                                       tGCGAAATCAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTg           <  1:5207783/140‑1 (MQ=255)

                                                                                                                               cAACGGTACT‑TT‑T‑TTTTACATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTACACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACa   <  2:2143259/140‑1 (MQ=255)

                                                                                                                               cAACGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACa   <  2:4819597/140‑1 (MQ=255)

                                                                                                                                aaCGGT‑CATTT‑T‑TTTTGCATCCTCGGTTCCGCGATAGCCATCTTCTATTGCATGAGCCGGCGGTGGCCCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCCACGCATAAGGCATGACAAGAAAACTTGCTAATACaa  <  2:2862276/140‑1 (MQ=255)

                                                                                                                                aaCGGT‑CATTT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACaa  <  2:2449474/140‑1 (MQ=255)

GCCGCAGGAATAACGACATTAATTTCACCGCTCTTATCGCGAAAAACGTAACGGTCCTCTCCTTTGTGAGAAATCAAATTACCGCGTAGTGAAACCGAAGCGCCATCGTGCATGGTTTTTGCGAAATCAACGGT‑CA‑TT‑T‑TTTTGCATCATCGGTTCCGCGATAGCCATCTTCTATTGCATGAGGCGGCGGTGGCGCTGCATCCTGTTTTAAACCGCCCTGGTCATCTGCCAACGCATAAGGCATGACAAGAAAACTTGCTAATACAA  >  NZ_CP025268/1629034‑1629300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`