| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,879,869 | (C)5→6 | pseudogene (521/821 nt) | nimR ← | DNA‑binding transcriptional regulator NimR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,879,864 | 1 | . | C | 97.5% | 811.8 / 11.1 | 245 | pseudogene (526/821 nt) | nimR | DNA‑binding transcriptional regulator NimR |
| Reads supporting (aligned to +/- strand): ref base . (3/3); new base C (100/139); total (103/142) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.98e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 281 total aligned reads displayed.
CCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑C‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGGG > NZ_CP025268/1879726‑1879998 | ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c > 1:355359/1‑140 (MQ=255)ccTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c > 2:465650/1‑140 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑c < 1:1398739/140‑1 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑c < 2:4319154/140‑1 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑c < 1:674480/140‑1 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑c < 2:4750746/140‑1 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑c < 1:3605237/140‑1 (MQ=255) cTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTAGCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑c < 1:5233939/140‑1 (MQ=255) ttCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑c‑cc > 1:3134874/1‑140 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACTCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATTATTCGGGCAAGATTGCGTTCGCTCATAGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑c‑cc‑cc > 2:1417795/1‑139 (MQ=255) cACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑c‑cc‑cc > 2:3253600/1‑139 (MQ=255) cTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑c‑c‑cc‑ccac < 2:4978968/140‑4 (MQ=255) aTCCCTGAAGCACCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCg > 2:2512489/1‑140 (MQ=255) cccTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCCCTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGAc < 1:4536659/140‑1 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAgg > 1:2523145/1‑140 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAgg > 1:101470/1‑140 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAgg > 1:4597021/1‑140 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAgg > 2:5350203/1‑140 (MQ=255) tGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAgg > 2:2363438/1‑140 (MQ=255) gAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGc < 2:3134874/140‑1 (MQ=255) aaGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGcc > 2:3375846/1‑140 (MQ=255) gcCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCACCCCCGTCTCTTTTACTATCAGTCGGGCAAGATGGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGACCCAATGCC‑C‑CC‑CCCTCGCCAGGCCCttt < 2:2258444/140‑1 (MQ=255) gcCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCttt < 1:1944676/140‑1 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTc > 1:1886542/1‑140 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTc > 2:4251386/1‑140 (MQ=255) ccATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTc > 1:1922796/1‑140 (MQ=255) cATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCg > 2:5303806/1‑140 (MQ=255) tAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGcc < 1:2055504/140‑1 (MQ=255) tAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGcc < 2:2011250/140‑1 (MQ=255) aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCca < 2:4869977/140‑1 (MQ=255) aaTCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCca < 2:1763220/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCcatc < 1:4756325/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCcatc < 2:4114795/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCcatc < 1:3375846/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCcatc < 1:2367182/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCcatc < 1:2200746/140‑1 (MQ=255) tCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCcatc < 1:162445/140‑1 (MQ=255) tCAGCTGTAACCGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCcatc < 2:2819950/140‑1 (MQ=255) aGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCcatcat > 2:1835939/1‑140 (MQ=255) aGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCcatcat > 2:3653106/1‑140 (MQ=255) cTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCAtct > 2:1510171/1‑140 (MQ=255) tGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCAtctc > 1:513821/1‑140 (MQ=255) tAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTcca < 1:2936779/140‑1 (MQ=255) tAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCAGCATCTcca > 2:2087298/1‑140 (MQ=255) tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCgg > 1:4722544/1‑139 (MQ=255) tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt > 1:3922529/1‑140 (MQ=255) tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt > 1:4116547/1‑140 (MQ=255) tgACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGt > 2:5116377/1‑140 (MQ=255) gACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTg < 1:5300263/140‑1 (MQ=255) aCGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGc < 1:3898528/140‑1 (MQ=255) aCGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCACCTCCACCATCGTGc < 1:1696587/140‑1 (MQ=255) tGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAtttt > 1:751943/1‑140 (MQ=255) tGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGAtttt > 2:4254111/1‑140 (MQ=255) cGAAAACTCACCCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAgg < 1:2827261/140‑1 (MQ=255) aaaaCTCCACCCCGTCCCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCACCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGCCAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTCAGGAt < 2:1579075/140‑1 (MQ=255) aaaCTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATg < 2:4501869/140‑1 (MQ=255) aaCCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGagaaga > 2:844464/1‑140 (MQ=255) aaCCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑C‑C‑CCACACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGagaaga > 1:2977924/1‑140 (MQ=255) aCCCCGTCTCTTTTCCTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCAACCATCGCGCGGCTTTTAGGATGAgacgaa > 2:2882244/1‑140 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc < 1:4032921/140‑1 (MQ=255) tctcTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGc > 1:3507306/1‑140 (MQ=255) tctagtttACTCTCAGTCGGGCCAGACTGCGTTCACTCATCACAAAAAACCCACCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCCCCACCACCGTGCGGATACTAGGACGAGGAGAAACGGGc > 2:3977410/6‑140 (MQ=255) ctTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAgg < 2:751943/140‑1 (MQ=255) ctTTTACTATAAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCCTTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAgg < 2:305231/140‑1 (MQ=255) ttACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGc < 2:4557224/140‑1 (MQ=255) ttACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGc < 1:395400/140‑1 (MQ=255) aCTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAg < 1:1773121/140‑1 (MQ=255) tATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCt < 2:1364970/140‑1 (MQ=255) accAGTCGCGCAAGACTGCGCTACCTCCTCGCAAAACAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtg < 1:4326195/138‑1 (MQ=255) aTCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtg < 1:217756/140‑1 (MQ=255) cAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgtt < 2:25234/140‑1 (MQ=255) aGTCGGGCAATATTGCGTTCACTCATCGCAAAAAAGCCAGCTCATTGCCCCAATG‑C‑CTCC‑CGCTCGACAAGTCCTTTCGCCATCATCTCCACCATCGTGTGGCGTTTAGGCTGAGAAGAAACGGGCAGGTGCAGCggttg > 2:2696127/1‑140 (MQ=255) aGTCGGGCAAGATTGCGTTCGCTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg > 1:1163009/1‑140 (MQ=255) aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg > 2:4723541/1‑140 (MQ=255) aGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttg > 1:50765/1‑140 (MQ=255) tCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgtt > 1:4959833/1‑140 (MQ=255) tCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgtt > 1:4218229/1‑140 (MQ=255) tCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgtt > 2:4767667/1‑140 (MQ=255) gggCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCtgttgttgt < 1:5175746/140‑1 (MQ=255) gCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTgg < 1:4188516/140‑1 (MQ=255) cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgc < 2:3704230/140‑1 (MQ=255) cAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑CTC‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGgc < 2:4286845/140‑1 (MQ=255) ttCACTCCTCGCAAAAAAGCCAGCCCATCGCCTCACTGCC‑C‑CC‑CGCGCGACAGGCCCTTGCGCCATCGTCTCCGCCATCTTGCGGAGTTTAGGATGAGAAGACACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAgggg < 2:4425056/140‑2 (MQ=255) ttCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGa < 2:418390/140‑1 (MQ=255) ttCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGa < 1:3229443/140‑1 (MQ=255) aCTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGtt > 2:1093942/1‑140 (MQ=255) cTCATCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTtc > 2:2191990/1‑140 (MQ=255) tCGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGCCAGGCCCTTTCGCcatc > 1:4307820/1‑59 (MQ=255) cGCAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCGTCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCaa > 2:4756828/1‑140 (MQ=255) cAAAAAAGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAAc < 1:628090/140‑1 (MQ=255) aaGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 2:319816/140‑1 (MQ=255) aaGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 2:3486092/140‑1 (MQ=255) aaGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 1:4240719/140‑1 (MQ=255) aaGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 2:492295/140‑1 (MQ=255) aaGCCAGCCCATTGCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGAc < 2:1721528/140‑1 (MQ=255) gCCCCAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTg < 2:1082997/140‑1 (MQ=255) ccccCATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGc < 2:4820082/140‑1 (MQ=255) ccccAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGc < 2:1303668/140‑1 (MQ=255) ccAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCgg < 2:4992933/140‑1 (MQ=255) ccAATGCC‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCgg < 1:4405687/140‑1 (MQ=255) | CCTTTCACTAATCCCTGAAGCGCCATAATCAGCTGTAACTGCTGACGCCACTGGCGAAAACTCAACCCCGTCTCTTTTACTATCAGTCGGGCAAGATTGCGTTCACTCATCGCAAAAAAGCCAGCCCATTGCCCCAATG‑C‑C‑CC‑CACTCGACAGGCCCTTTCGCCATCATCTCCACCATCGTGCGGATTTTAGGATGAGAAGAAACGGGCAGGTGCAGCTGTTGTTGTGGCTGCTGAGGGAGTTCATCAAACAGGACCTGAATTAATCTGCGGG > NZ_CP025268/1879726‑1879998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |