| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,864,439 | +C | pseudogene (1083/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,864,437 | 1 | . | C | 97.8% | 1034.8 / 13.2 | 319 | pseudogene (1085/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base . (3/4); new base C (161/150); total (165/154) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 335 total aligned reads displayed.
CAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCAT‑‑‑GTTCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCG > NZ_CP025268/3864299‑3864571 | cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑c < 2:4121207/140‑1 (MQ=255) gAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑ccc < 1:1494687/140‑2 (MQ=255) aaTCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGGTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGAGGTAAAACCTAGTCAATCAGACCCCCG‑ccca > 2:3357823/1‑138 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCG‑cccatg < 1:780608/140‑5 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGTGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGCACATCGGGACCCAGTTTTGCGGTAAAACCTCGTCAATCAGTCCTCCGCCCAT‑‑‑GTTgcc < 2:4218395‑M1/140‑4 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcc > 2:2357048‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcc > 1:1816072‑M1/1‑137 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgccca < 2:1036542‑M1/140‑6 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgccca < 2:1466250‑M1/140‑6 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgccca < 2:3832504‑M1/140‑6 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccac < 1:20636‑M1/140‑7 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccac < 2:5054291‑M1/140‑7 (MQ=255) aaaaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccac < 1:3516093‑M1/140‑10 (MQ=255) aaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacac < 1:2011930‑M1/140‑12 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacacc > 2:3583517‑M1/1‑128 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacacca < 2:2261856‑M1/140‑14 (MQ=255) acaCGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacacca < 2:3994236‑M1/139‑14 (MQ=255) cACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccccaccaa < 2:1142886‑M1/140‑15 (MQ=255) cACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaa < 2:1649929‑M1/140‑15 (MQ=255) cACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaa > 2:5149338‑M1/1‑126 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagaga < 2:2252722‑M1/140‑20 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagaga < 1:748423‑M1/140‑20 (MQ=255) cagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacatta > 1:3930037‑M1/1‑114 (MQ=255) gggTAACGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacg < 1:1561347‑M1/140‑29 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacgg > 1:1683233‑M1/1‑111 (MQ=255) gTAAGGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggt < 1:3603055‑M1/140‑31 (MQ=255) gTAAAGCACCACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacacaaaagagatacattacggt < 2:2927393‑M1/140‑31 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggt < 2:4360707‑M1/140‑31 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtc > 1:4174240‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtc < 2:838794‑M1/140‑32 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtc > 2:2624016‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtc > 2:2901642‑M1/1‑109 (MQ=255) aaGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcga > 1:928295‑M1/1‑107 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgac > 1:2495376‑M1/1‑106 (MQ=255) cacaACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggt < 2:4830951‑M1/134‑31 (MQ=255) acaACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacatt < 1:2636871‑M1/140‑38 (MQ=255) aaacCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattg < 2:4524008‑M1/139‑39 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattga > 1:4685260‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattga > 2:2113368‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattga > 1:896272‑M1/1‑101 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgag < 2:1816072‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTCAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgag < 1:4878938‑M1/140‑41 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccac > 2:2386970‑M1/1‑99 (MQ=255) ccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggc < 1:4803786‑M1/140‑43 (MQ=255) tGGCGCTGTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGAGCCAGTTTTGCGGGAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacgggcgacactgaggccgcc > 2:568980‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 2:888706‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:5204580‑M1/1‑94 (MQ=255) cGATTTGGGTCAGCATCTTATCCGCGTGGCTGCTGAACATCGGGATCCCGTTTTGCGGTAAAACCTACTCAAGCAGACCTCCGCCCATTTGGCCCACCACACCCAAGAGATACATTACGGTCGACATTGAGTCCGCCatc < 2:3883700/140‑3 (MQ=255) cGATTTGGGTCAGCATCATCTCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:3730183‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc > 2:2450114‑M1/1‑91 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:3575437‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:4119548‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:5240801‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:1232631‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:2565752‑M1/140‑50 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 2:1261772‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:2411629‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac < 1:4943016‑M1/140‑52 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:5086498‑M1/1‑89 (MQ=255) tGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc < 1:1241630‑M1/140‑55 (MQ=255) ggTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgt < 1:4642016‑M1/140‑57 (MQ=255) gTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtg < 2:2719347‑M1/140‑58 (MQ=255) cAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgta < 2:4572283‑M1/140‑60 (MQ=255) atatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaa > 1:4001905‑M1/1‑74 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 1:105367‑M1/1‑73 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 1:584074‑M1/1‑73 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGAACCAGTTTTGCGGTAAAACCTCGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 2:3916847‑M1/1‑73 (MQ=255) atCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaaca > 2:3138156‑M1/1‑72 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccagaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaacgcaaacagtaa > 2:1909532‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:716633‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 2:670939‑M1/1‑68 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg < 1:3184768‑M1/140‑75 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg < 1:2097485‑M1/140‑75 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg < 2:3316781‑M1/140‑75 (MQ=255) ggTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggt > 1:2984606‑M1/1‑64 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg > 1:1270087‑M1/1‑63 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg > 2:4728477‑M1/1‑63 (MQ=255) tCGGGATCCAGTTCTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 2:775519‑M1/1‑52 (MQ=255) ggATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaag > 2:4950498‑M1/1‑49 (MQ=255) ggATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaag > 1:2675054‑M1/1‑49 (MQ=255) cGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcg > 2:367545‑M1/1‑36 (MQ=255) cGGTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcg > 2:5086397‑M1/1‑36 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:3976284‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:1834400‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:3870854‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacactacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:4455305‑M1/140‑106 (MQ=255) tAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggtt < 2:3060085‑M1/140‑108 (MQ=255) tAAAACCTAGTCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggtt > 1:4348114‑M1/1‑33 (MQ=255) aacctagtcAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcgg < 1:2330598‑M1/136‑111 (MQ=255) aacctagtcAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcgg < 1:4721247‑M1/136‑111 (MQ=255) tCAATCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcc > 1:4537449‑M1/1‑23 (MQ=255) aTCAGACCTCCGCCCAT‑‑‑TTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaagggaaattccagcggttcggtaattcccac > 1:1385912‑M1/1‑20 (MQ=255) tCAGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaaggaacaggaaggtaaattccagcggttcggtaattcccacc > 2:5345280‑M1/1‑19 (MQ=255) aGACCTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccag < 1:4119714‑M1/140‑124 (MQ=255) ccTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcat > 1:3442754‑M1/1‑14 (MQ=255) cTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 1:2791114‑M1/140‑128 (MQ=255) cTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 2:4063485‑M1/140‑128 (MQ=255) cTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 2:5180759‑M1/140‑128 (MQ=255) cTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 1:36923‑M1/140‑128 (MQ=255) cTCCGCCCAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 2:1563750‑M1/140‑128 (MQ=255) | CAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCAT‑‑‑GTTCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCG > NZ_CP025268/3864299‑3864571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |