| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 400,598 | +G | pseudogene (162/260 nt) | iraP → | anti‑adapter protein IraP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 400,594 | 1 | . | G | 97.7% | 433.6 / 3.0 | 130 | pseudogene (158/260 nt) | iraP | anti‑adapter protein IraP |
| Reads supporting (aligned to +/- strand): ref base . (3/0); new base G (60/67); total (63/67) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.11e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
Only 100 of 145 total aligned reads displayed.
AGTTGTTATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGA‑GGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATAAAGT > NZ_CP025268/400456‑400728 | aGTTGTTATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTaga‑g > 2:354746/1‑140 (MQ=255) gttgttATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCACTGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGA‑gg < 2:4688308/140‑1 (MQ=255) gttgttATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGA‑gg < 2:4927418/140‑1 (MQ=255) ttATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGA‑gggggc > 2:881234/1‑138 (MQ=255) tctttAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTTGCAATATGGCGAAAAATGACCAACAGCGGTTGATTGATCAGGTAGA‑gggggcg < 2:3186820/138‑4 (MQ=255) tATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGA‑gggggcg < 1:717009/140‑4 (MQ=255) tATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGA‑gggggcg < 1:4674370/140‑4 (MQ=255) aaGCTTGCCCAAAAAGAAGAAGAGCCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGCTTATCGTCACTGCAATGCCTCGCAATCTGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGCAGAGGGGG‑CGCTGTa < 1:4525648/140‑1 (MQ=255) aGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTAc < 1:2818345/140‑1 (MQ=255) aGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTAc < 1:5334576/140‑1 (MQ=255) aGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTAc < 2:4883239/140‑1 (MQ=255) aGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTAc > 1:1162833/1‑140 (MQ=255) aGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTAc < 2:4469211/140‑1 (MQ=255) aGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTAc < 2:4883704/140‑1 (MQ=255) aGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTAc < 2:4882908/140‑1 (MQ=255) aGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGA‑gggggcg > 2:2800047/1‑131 (MQ=255) aGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGA‑gggggcg < 1:2800047/134‑4 (MQ=255) aGCTTGACCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAAGATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTAc < 2:4680614/140‑1 (MQ=255) gCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACg < 1:2045102/140‑1 (MQ=255) gCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACg < 1:2715209/140‑1 (MQ=255) ttGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAg > 1:2303553/1‑140 (MQ=255) gCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGt > 2:1228616/1‑140 (MQ=255) cccAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTa > 2:1001935/1‑140 (MQ=255) cccAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTa > 2:4574609/1‑140 (MQ=255) cccAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTa > 1:4212065/1‑140 (MQ=255) cccAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTGGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTa > 1:740278/1‑140 (MQ=255) gaagaagaGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGa < 2:2543409/140‑1 (MQ=255) agaagaGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATg > 2:2981335/1‑140 (MQ=255) agagTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCa < 2:1075557/140‑1 (MQ=255) agTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGGAAAGCCCGATGCCAGc > 2:1149841/1‑140 (MQ=255) ttCGAAAGATCTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCTCTGCACTGCTTCGCAATATAGCGCAAAATGACCAACAGCGGTTGATGCATCAGGTGGAGGGGG‑CGCTGTACGATGTATAGCCCGATGCCAGCa < 2:2203755/139‑1 (MQ=255) tCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGA‑ggggg < 2:435232/109‑2 (MQ=255) tCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGA‑ggggg > 1:435232/1‑108 (MQ=255) aaGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCt < 1:1537481/140‑1 (MQ=255) gAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTga < 1:4982378/140‑1 (MQ=255) gAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTga < 1:4110735/140‑1 (MQ=255) aCTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTgacg < 2:1779559/140‑1 (MQ=255) aCTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTgacg > 2:2137643/1‑140 (MQ=255) cTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTgacga < 2:3223963/140‑1 (MQ=255) cTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTgacga < 2:2173680/140‑1 (MQ=255) tgtgtgCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTgacgac > 1:402205/1‑140 (MQ=255) tgtgCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGAcgacga > 1:2257608/1‑140 (MQ=255) gtgCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGAt > 1:435408/1‑140 (MQ=255) tgCGCAGGTAGAAGCTTTGGGGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCGGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATa < 2:2637169/140‑1 (MQ=255) tgCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATa > 1:4892053/1‑140 (MQ=255) tgCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATa < 1:5193534/140‑1 (MQ=255) gcAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACgg > 1:4401226/1‑140 (MQ=255) gcAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACgg > 2:1508412/1‑140 (MQ=255) aGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAg < 2:2000584/140‑1 (MQ=255) ggTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAgc < 1:1324619/140‑1 (MQ=255) ggTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAgc > 2:5123272/1‑140 (MQ=255) tAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAgctg > 2:3226199/1‑140 (MQ=255) tAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGACGCCAGCATTCCTGACGACGATACGGAgctg > 1:1603759/1‑140 (MQ=255) tAGAAGCTTTGGAGATCATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAATAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAgcag < 1:2976152/140‑3 (MQ=255) aaGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGctgctg < 2:1433557/140‑1 (MQ=255) gCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTgcg < 1:1687233/140‑1 (MQ=255) ttGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGa < 2:652432/140‑1 (MQ=255) tGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGAt > 1:2081760/1‑140 (MQ=255) tGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGAt > 1:1566478/1‑140 (MQ=255) ggAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGAtt < 1:1450232/140‑1 (MQ=255) ggAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGAtt < 1:3060133/140‑1 (MQ=255) ggAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGAtt < 1:3060184/140‑1 (MQ=255) aTTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGt < 1:1001935/140‑1 (MQ=255) ttATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGGTGCCAGCATTCCTGACGACGATACGGTGCTGCTGCGCGATTACGTa < 2:740278/140‑1 (MQ=255) aTCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTaaa < 2:5030077/140‑1 (MQ=255) cGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAaaga < 1:1488559/140‑1 (MQ=255) aCTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGtt < 1:1250228/140‑1 (MQ=255) tGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGACGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTAt < 2:1603759/140‑1 (MQ=255) tGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGAGCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGGTGACGGAAAGAAGTTAt > 1:3897243/1‑140 (MQ=255) tGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAg > 1:2123906/1‑140 (MQ=255) tGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAg > 1:2123179/1‑140 (MQ=255) cTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCa > 2:491083/1‑140 (MQ=255) cTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCa > 1:4487045/1‑140 (MQ=255) cTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCa > 1:444620/1‑140 (MQ=255) cGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATa < 1:429680/97‑1 (MQ=255) cGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATa > 2:429680/1‑97 (MQ=255) cAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTc > 1:1762514/1‑140 (MQ=255) tatGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGt > 1:3641981/1‑139 (MQ=255) tatGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGt > 1:3641902/1‑139 (MQ=255) tatGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGt < 2:3641981/139‑1 (MQ=255) cgcAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTaa > 1:3553928/1‑140 (MQ=255) cgcAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTaa > 2:398729/1‑140 (MQ=255) cgcAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTaa > 1:823160/1‑140 (MQ=255) cgcAAAATGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTaa > 2:1240984/1‑140 (MQ=255) aaTGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGt > 2:3107158/1‑140 (MQ=255) tGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTa < 2:3547877/140‑1 (MQ=255) tGACCAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTa < 1:4764139/140‑1 (MQ=255) ccAACAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATc > 2:2029946/1‑140 (MQ=255) aaCAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGGGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCtt < 1:3567171/140‑1 (MQ=255) aaCAGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCtt < 1:3731048/140‑1 (MQ=255) aGCGGTTGATTGATCAGGTAGAGGGGG‑CGCTGTACg < 1:3208673/36‑1 (MQ=255) ggTTGATTGATCAGTTAGAGGGGG‑CGCGGTACGAGGGAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAAc < 1:3458890/140‑1 (MQ=255) gTTGATTGATCAGGTAGAGGGGG‑AGCTGTACGAGGGAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACa < 2:5226426/140‑1 (MQ=255) ttgattgaTCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAg < 2:2081760/140‑1 (MQ=255) ttgattgaTCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAg < 1:1071027/140‑1 (MQ=255) ttgattgaTCAGGTAGAGGGGG‑CGCTGTACGAGCTCAAGCCCGATGCGAGCATTCCTGACGACGATACGGAGCTGATGCGCGCTTACGTACAGAAGTTATTGACGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAAccg < 2:1377486/140‑3 (MQ=255) atCAGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCAt > 1:2718063/1‑140 (MQ=255) aGGTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATaaa > 2:3105372/1‑140 (MQ=255) gTAGAGGGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATAAAGt > 1:931129/1‑140 (MQ=255) gTAGA‑GGGGACGCTGTACGAGGTACAGCTCGATGCCAGCATTCCTGACGACGATACGGAGTGGCTGCGCGTGTGCGCAAAGATGTTATAGAAGCTTCCTCGTCAGTAAAAAATTAATGTGTTCAACAGCTGTCTTAAAGt > 2:3795441/1‑140 (MQ=255) | AGTTGTTATTTAAGCTTGCCCAAAAAGAAGAAGAGTCGAAAGAACTGTGTGCGCAGGTAGAAGCTTTGGAGATTATCGTCACTGCAATGCTTCGCAATATGGCGCAAAATGACCAACAGCGGTTGATTGATCAGGTAGA‑GGGG‑CGCTGTACGAGGTAAAGCCCGATGCCAGCATTCCTGACGACGATACGGAGCTGCTGCGCGATTACGTAAAGAAGTTATTGAAGCATCCTCGTCAGTAAAAAGTTAATCTTTTCAACAGCTGTCATAAAGT > NZ_CP025268/400456‑400728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |