BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP025268	= 3549238	491 (1.580)	64 (0.240) +TTTTTTAATGATACGGCGACC	28/234	4.2	13.8%	coding (1519/2085 nt)	malQ	4‑alpha‑glucanotransferase
*	?	NZ_CP025268	3549260 =	450 (1.450)	64 (0.240) +TTTTTTAATGATACGGCGACC	28/234	4.2	13.8%	coding (1497/2085 nt)	malQ	4‑alpha‑glucanotransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 558 total aligned reads displayed.

CGCAGCGTTGGCAGGTCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATAC  >  NZ_CP025268/3549099‑3549377

cgcAGCGTTGGCAGGTCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTAcc                                                                                                                                                 >  1:1080835/1‑140 (MQ=255)

cgcAGCGTTGGCAGGTCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTAcc                                                                                                                                                 >  2:716389/1‑140 (MQ=255)

cgcAGCGTTGGCAGGTCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTAcc                                                                                                                                                 >  1:1019791/1‑140 (MQ=255)

cgcAGCGTTGGCAGGTCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTAcc                                                                                                                                                 >  2:5112215/1‑140 (MQ=255)

cgcAGCGTTGGCAGGTCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCCCGTGGTTGCTTTCGAAATAGTGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTAcc                                                                                                                                                 >  2:427955/1‑140 (MQ=255)

 gcAGCGTTGGCAGGTCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCg                                                                                                                                                <  1:2360913/140‑1 (MQ=255)

  cAGCGTTGGCAGGTCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGa                                                                                                                                               >  1:4952510/1‑140 (MQ=255)

    gCGTTGGCAGGTCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACa                                                                                                                                             <  1:3325013/140‑1 (MQ=255)

            aGGTCATGTGTCGCCGCAACCGCCATCGCCTGCTCCGGCTCCGCTTTCGGTGCACCGAACGTCTTCTCGTGGTCGTTTTCGAACTAGTCAACTTTGTACGAGTACACACCGCTGCTGCGCACCTTACCGACAATCTCTAc                                                                                                                                     <  2:4058421/140‑1 (MQ=255)

            aGGTCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTAc                                                                                                                                     <  1:1643213/140‑1 (MQ=255)

            aGGTCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTAc                                                                                                                                     <  2:5223796/140‑1 (MQ=255)

            aGGTCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTAc                                                                                                                                     <  1:2027710/140‑1 (MQ=255)

               tCATGTGTCGCCGCAACCGCCCTCGCCTGCTCCGGATCCGCTTTCGGTGCACGGACCGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACcgg                                                                                                                                  >  2:3837656/1‑140 (MQ=255)

               tCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACcgg                                                                                                                                  >  1:1702688/1‑140 (MQ=255)

               tCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACcgg                                                                                                                                  >  1:2890846/1‑140 (MQ=255)

               tCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACcgg                                                                                                                                  >  1:2819591/1‑140 (MQ=255)

               tCATGTGTCGCAGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTGACCGACAATCTCTACcgg                                                                                                                                  >  2:3801549/1‑140 (MQ=255)

                 aTGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACcggta                                                                                                                                <  1:4815103/140‑1 (MQ=255)

                 aTGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACcggta                                                                                                                                <  2:5345537/140‑1 (MQ=255)

                 aTGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACcggta                                                                                                                                <  1:685382/140‑1 (MQ=255)

                 aTGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACcggta                                                                                                                                <  2:1983156/140‑1 (MQ=255)

                 aTGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACcggta                                                                                                                                <  2:3968314/140‑1 (MQ=255)

                 aTGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACcggta                                                                                                                                >  1:145023/1‑140 (MQ=255)

                 aTGTGTCGCCGCAACCGCCATCCCCTGCTCCGGATACGCTTTGGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACcggta                                                                                                                                <  2:1816483/140‑1 (MQ=255)

                      tCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACcggtacggt‑‑‑‑a                                                                                                                       >  1:4339692/1‑140 (MQ=255)

                        gccgcAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑Acc                                                                                                                     >  2:4416494/1‑140 (MQ=255)

                                  ccATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCa                                                                                                           <  1:4867316/140‑1 (MQ=255)

                                    aTCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCAcc                                                                                                         <  1:927272/140‑1 (MQ=255)

                                    aTCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCAcc                                                                                                         <  1:629642/140‑1 (MQ=255)

                                    aTCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCAcc                                                                                                         <  1:4416832/140‑1 (MQ=255)

                                       gACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGTCTTTCACGACACGGACGCC‑‑‑‑ACCGAGATCTACACCAAt                                                                                                      <  2:4559220/140‑1 (MQ=255)

                                       gACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAAt                                                                                                      <  1:3672951/140‑1 (MQ=255)

                                       gACTGCTCCGGACACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCATCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAAt                                                                                                      <  1:4568047/140‑1 (MQ=255)

                                         cTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCa                                                                                                    <  1:4026589/140‑1 (MQ=255)

                                         cTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCa                                                                                                    <  1:50965/140‑1 (MQ=255)

                                            cTCCGGATACGCTTTCGGTGCACGGAATGTCTTCTCGTGGTCGTTTTCGACATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCa                                                                                                 >  1:2490953/1‑140 (MQ=255)

                                            cTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACCGT‑‑‑‑ACCGAGAACTTCACCAATCACCa                                                                                                 >  2:4683483/1‑140 (MQ=255)

                                                 gATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAg                                                                                            >  2:790117/1‑140 (MQ=255)

                                                      gCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATg                                                                                       <  1:4381566/140‑1 (MQ=255)

                                                      gCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATg                                                                                       >  2:2405006/1‑140 (MQ=255)

                                                      gCTTTCGGTGCACGCAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACCTTGTAAAAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTCATGATACGGCCACC‑‑‑‑ACCGAGATCTACACCAATCACCATACAGCGATg                                                                                       <  2:2937653/140‑1 (MQ=255)

                                                         ttCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACg                                                                                    >  2:48964/1‑140 (MQ=255)

                                                          tCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGt                                                                                   <  1:2581783/140‑1 (MQ=255)

                                                           cGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACa                                                                                                                                             <  2:1721482/85‑1 (MQ=255)

                                                           cGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCgag                                                                                                                  <  1:1548276/108‑1 (MQ=255)

                                                                  cGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTc                                                                           >  2:2661664/1‑140 (MQ=255)

                                                                        gTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCCATGACGTTTACTTTCGAGTGc                                                                     >  2:3002764/1‑140 (MQ=255)

                                                                          cttctCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCa                                                                   >  1:3374568/1‑140 (MQ=255)

                                                                          cttctCGTGGTCGCCTTCGAAATAGAGCGCTTTGTAAGCGTACACACCGCTGCTGAGCAGCTTACCGTCATTAACGACCCGGAGAGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCa                                                                   <  2:4326741/140‑1 (MQ=255)

                                                                          cgtctcGTGGTCGTGTTCGAAATAGAGCACTTTGTAAGAGTACACTCCGCTGCTGCGCAGCTTACCGTCTATCACGACCCGGAGACC‑‑‑‑ACCGAGATCTTCACCAGTCACCATACAGCGATGACGTTTACTTTCGAGTGCCa                                                                   <  2:4617187/138‑1 (MQ=255)

                                                                               cGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCGGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATc                                                              >  2:1384054/1‑140 (MQ=255)

                                                                               cGTGATCGTTTTCGAAATAGAGTACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACC‑‑‑‑TTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATc                                                              <  2:5002309/140‑1 (MQ=255)

                                                                                 tGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGTCTTTCACGATCCGTCCGCC‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCga                                                            <  2:4759142/140‑1 (MQ=255)

                                                                                 tGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCga                                                            <  1:3014833/140‑1 (MQ=255)

                                                                                 tGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCga                                                            <  1:2288835/140‑1 (MQ=255)

                                                                                   gTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCa                                                                                                           >  2:335171/1‑91 (MQ=255)

                                                                                   gTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCgaga                                                          >  1:4270017/1‑140 (MQ=255)

                                                                                   gTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCgaga                                                          >  1:5328481/1‑140 (MQ=255)

                                                                                     cGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGGCC‑‑‑‑ACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGc                                                        <  2:1485649/140‑1 (MQ=255)

                                                                                     cGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGc                                                        <  1:3282135/140‑1 (MQ=255)

                                                                                        tttCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCGACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGa                                                     <  2:1027639/140‑1 (MQ=255)

                                                                                            gAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGatcat                                                 <  1:800474/140‑1 (MQ=255)

                                                                                             aaaTAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACTTTCACGACCCGTACGCC‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGatcatc                                                <  2:3309736/140‑1 (MQ=255)

                                                                                               aTAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCa                                              <  1:4667405/140‑1 (MQ=255)

                                                                                                 acagCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCAcc                                            <  1:3162046/138‑1 (MQ=255)

                                                                                                          tGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGa                                   >  2:650310/1‑140 (MQ=255)

                                                                                                                  tccacacCCCTGCTGCGCAGCTTACGTACCATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCAACATAAAGCGATACCGTTTAGTTTCGCGTGCGAGAATCGACTGCAGTTTACCCACGGGAGACTGAACATagcc                           >  2:2209831/3‑137 (MQ=255)

                                                                                                                  tACACACCGCTGCTGCGTAGCTTACCGACACTCTCTACCGGTACGGT‑‑‑‑ACCGACACCTTCGCCAATCACCCTACAGCGCTGACGTTTCCTTTCTAGTGCCCGAATCGAGAGGAGATCATCCCCCGGATAGTGAACACAcgc                           >  2:3178062/1‑140 (MQ=255)

                                                                                                                  tACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATAcgc                           >  2:3665089/1‑140 (MQ=255)

                                                                                                                  tACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATAcgc                           >  1:2654377/1‑140 (MQ=255)

                                                                                                                  tACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATAcgc                           >  1:4008195/1‑140 (MQ=255)

                                                                                                                  tACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATAcgc                           >  1:1930509/1‑140 (MQ=255)

                                                                                                                    cacacCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCGGCATCGAGAGCAGATCATCCACCGGATAGTGAACATACgcgc                         >  2:1536597/1‑140 (MQ=255)

                                                                                                                    cacacCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACgcgc                         >  1:1361342/1‑140 (MQ=255)

                                                                                                                    cacacCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACgcgc                         >  1:5223331/1‑140 (MQ=255)

                                                                                                                    cacacCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGAGAGTGACCATACgcgc                         >  2:2728074/1‑140 (MQ=255)

                                                                                                                    cacacCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGCACGGT‑‑‑‑ACCGAGCTCTTCACAAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGCATCGAGAGCAGACCATCCACCGGATAGTGAACATACgcgc                         >  2:3186952/1‑140 (MQ=255)

                                                                                                                         cGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCCTACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGa                    >  1:1325829/1‑140 (MQ=255)

                                                                                                                         cGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGa                    >  2:926472/1‑140 (MQ=255)

                                                                                                                         cGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGa                    >  2:2045925/1‑140 (MQ=255)

                                                                                                                          gctgctGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATAcgc                           <  2:1242953/132‑1 (MQ=255)

                                                                                                                          gctgctGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATAcgc                           >  1:1242953/1‑132 (MQ=255)

                                                                                                                          gctgctGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGAt                   >  2:2599028/1‑140 (MQ=255)

                                                                                                                          gctgctGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGAt                   >  1:3900024/1‑140 (MQ=255)

                                                                                                                          gctgctGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGAt                   >  1:3724338/1‑140 (MQ=255)

                                                                                                                           ctgctgCGCAGCTTCCCGTCTATCACGACCCGTCCGCC‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATc                  <  2:3464182/140‑1 (MQ=255)

                                                                                                                           ctgctgCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATc                  >  1:1834061/1‑140 (MQ=255)

                                                                                                                            tgctgcGCAGCTTACCGACAATCTCTACCTGTACGAT‑‑‑‑ACCGAGATCTTCACCAATCACCATCAAACAATGACGTTTACGTTCGAGTGCCAGAATCGAGAGCAGATCATACACCGGAGAGTGAAAAAAAGCCCCCTGATCt                 >  2:36084/1‑140 (MQ=255)

                                                                                                                            tgctgcGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCt                 >  2:1641446/1‑140 (MQ=255)

                                                                                                                            tgctgcGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGACAGTGAACATCCGCGCCCAGATCt                 >  2:4483786/1‑140 (MQ=255)

                                                                                                                            tgctgcGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGACAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCt                 >  1:3806512/1‑140 (MQ=255)

                                                                                                                                gcgcAGCTTACCGACAATCTCTCCCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCg             <  2:4211056/140‑1 (MQ=255)

                                                                                                                                  gcAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCCCCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGtc           <  1:408771/140‑1 (MQ=255)

                                                                                                                                  gcAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGtc           <  1:1384054/140‑1 (MQ=255)

                                                                                                                                   cAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGtct          >  1:2150073/1‑140 (MQ=255)

                                                                                                                                   cAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGtct          >  1:3560271/1‑140 (MQ=255)

                                                                                                                                   cAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGtct          <  1:3484413/140‑1 (MQ=255)

                                                                                                                                   cAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGtct          >  1:4996371/1‑140 (MQ=255)

                                                                                                                                       ttACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCCTACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGcc      <  1:4202952/140‑1 (MQ=255)

                                                                                                                                           cGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATAc  <  1:5247617/140‑1 (MQ=255)

CGCAGCGTTGGCAGGTCATGTGTCGCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGACAATCTCTACCGGTACGGT‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATAC  >  NZ_CP025268/3549099‑3549377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.