| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP025268 | 262,011 | Δ34,307 bp | ykfI–intF | 46 genes ykfI, yafW, ykfH, ykfG, yafX, ykfF, CXP41_RS01315, CXP41_RS01320, CXP41_RS01325, CXP41_RS01330, yafZ, ykfA, perR, CXP41_RS01355, CXP41_RS01360, CXP41_RS01365, ykfC, CXP41_RS01385, mmuP, mmuM, fbpC, CXP41_RS01405, CXP41_RS01410, CXP41_RS01410, CXP41_RS01420, CXP41_RS01425, yagB, CXP41_RS24560, yagA, yagE, yagF, yagG, yagH, xynR, argF, argL, CXP41_RS01470, CXP41_RS01480, CXP41_RS01480, CXP41_RS01490, yagK, yagL, CXP41_RS01505, ykgV, CXP41_RS01515, intF |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP025268 | 262011 | 296317 | 34307 | 345 [0] | [5] 351 | ykfI–intF | ykfI,yafW,ykfH,ykfG,yafX,ykfF,CXP41_RS01315,CXP41_RS01320,CXP41_RS01325,CXP41_RS01330,yafZ,ykfA,perR,CXP41_RS01355,CXP41_RS01360,CXP41_RS01365,ykfC,CXP41_RS01385,mmuP,mmuM,fbpC,CXP41_RS01405,CXP41_RS01410,CXP41_RS01410,CXP41_RS01420,CXP41_RS01425,yagB,CXP41_RS24560,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,CXP41_RS01470,CXP41_RS01480,CXP41_RS01480,CXP41_RS01490,yagK,yagL,CXP41_RS01505,ykgV,CXP41_RS01515,intF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP025268 | = 262010 | 0 (0.000) | 188 (1.080) | 54/156 | 0.2 | 100% | intergenic (+11/+371) | CXP41_RS01280/ykfI | tRNA‑Thr/type IV toxin‑antitoxin system toxin YkfI |
| ? | NZ_CP025268 | 296318 = | 0 (0.000) | intergenic (‑170/+115) | intF/CXP41_RS01530 | integrase family protein/LysR substrate‑binding domain‑containing protein | |||||
Only 100 of 351 total aligned reads displayed.
GCTATAACTTGGTGTTTTATAATATAAAGTATGTTGTTTTGATTGATTGCTCAAGTAGTTAAAAATGCATTAACATCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCATTCT > NZ_CP025268/296182‑296457 | ttttaaccttgtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGt < 1:1483931‑M2/4‑1 (MQ=255)ttttaaccttgtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGt < 2:2107714‑M2/4‑1 (MQ=255) cccttgtccaccgtgattcacgttcgtgaccatgtcctttcagggccgatatcgctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTAccc < 2:234754‑M2/9‑1 (MQ=255) accttgtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTAccc > 2:2523172‑M2/132‑140 (MQ=255) cttgtccaccgtgattcacgttcgtgaccatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggccccattaaaatcaaaGAGTTACCCCa < 1:4651755‑M2/11‑1 (MQ=255) cttgtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCa < 1:173343‑M2/11‑1 (MQ=255) cttgtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCa < 1:4764963‑M2/11‑1 (MQ=255) tgtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGCGTTACCCCcta < 2:1176479‑M2/13‑1 (MQ=255) tgtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggaaccattaaaatcaaaGAGTTACCCCata < 2:1055762‑M2/13‑1 (MQ=255) gtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCatat > 1:3334645‑M2/127‑140 (MQ=255) gtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCatat > 1:1821748‑M2/127‑140 (MQ=255) cgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAAt > 2:1470294‑M2/121‑140 (MQ=255) ttcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATAcacc < 1:605012‑M2/25‑1 (MQ=255) ttcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATAcacc < 1:560817‑M2/25‑1 (MQ=255) ttcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATAcacc < 2:3108860‑M2/25‑1 (MQ=255) ttcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATAcacc < 1:3973174‑M2/25‑1 (MQ=255) cacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgcctcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATAcaccac < 2:284731‑M2/27‑1 (MQ=255) gttcgtgaacatgtcctttcagggccgatatagctctgttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCacgat < 1:4284137‑M2/30‑3 (MQ=255) gttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGtt < 2:5329121‑M2/30‑1 (MQ=255) gttcgtgaacatgtcctttcagggccgatatagctcagttagtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGtt < 1:4917025‑M2/30‑1 (MQ=255) tcgtgaacaggtccattcagggccgacatagcgcagttggtagagcagcgcattcggaatgcgaaggtcgtaggttcgactcctattaacggcaccattaaaatcaaaGAGTTACCCCATATGTAAATACACCACGTTtc > 2:2694140‑M2/109‑140 (MQ=255) tgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTtcctc < 2:5074285‑M2/35‑1 (MQ=255) atgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCtgtg < 2:3632339‑M2/40‑1 (MQ=255) tgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGc < 2:4150841‑M2/41‑1 (MQ=255) gtcctttgtgggccgatatagctcaggtggtagggcaggtcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccatcaatatcaaaGAGTGACCCCACATTTAAATACACCACGTTTCCTCCTGTGcc < 1:3647640‑M2/42‑1 (MQ=255) gtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGcc < 1:2731704‑M2/42‑1 (MQ=255) gtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGcc < 1:3117491‑M2/42‑1 (MQ=255) gtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGcc > 2:3503091‑M2/99‑140 (MQ=255) gtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGcc < 1:3629998‑M2/42‑1 (MQ=255) gtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGcc > 2:4512129‑M2/99‑140 (MQ=255) ttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTAtt > 1:827598‑M2/94‑140 (MQ=255) tcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTtcctc > 1:5070947‑M2/93‑127 (MQ=255) gggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTtgtg < 2:216933‑M2/51‑1 (MQ=255) atatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTg > 2:4756763‑M2/84‑140 (MQ=255) atatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTg > 1:3486841‑M2/84‑140 (MQ=255) ctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCt > 1:1695059‑M2/78‑140 (MQ=255) ctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCt > 1:1400958‑M2/78‑140 (MQ=255) gttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGc > 2:599423‑M2/74‑140 (MQ=255) gttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTAGGc > 1:3793610‑M2/74‑140 (MQ=255) ttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCa > 2:2162043‑M2/73‑140 (MQ=255) ttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCa > 2:2495172‑M2/73‑140 (MQ=255) tggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCaa < 1:2695434‑M2/69‑1 (MQ=255) gtagagcagcgcattcttaatgcgaaggtcgtaggttcgactcctattatcggcaccatgaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAAtt < 1:2954269‑M2/71‑1 (MQ=255) gtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAAtt < 2:2289595‑M2/71‑1 (MQ=255) gcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTAccc < 1:2480288‑M2/9‑1 (MQ=255) gcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATtcatca < 2:3307579‑M2/76‑1 (MQ=255) gcagcgcattcctaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATtcatca < 1:2075423‑M2/76‑1 (MQ=255) gcagcgcacttgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattacaatcaaaGAGTTACCCCATATTTAAATACACCACCTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATtcatca < 2:3920507‑M2/76‑1 (MQ=255) agcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCaaa > 2:1906142‑M2/63‑140 (MQ=255) cgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCGATGCATCAAAAt > 2:4396076‑M2/61‑140 (MQ=255) cgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAAt > 2:1100912‑M2/61‑140 (MQ=255) cgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAAt > 1:2005537‑M2/61‑140 (MQ=255) gcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATa < 1:1529599‑M2/81‑1 (MQ=255) gcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATa > 1:2881592‑M2/60‑140 (MQ=255) gcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATa < 2:826905‑M2/81‑1 (MQ=255) gcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATa > 1:3564198‑M2/60‑140 (MQ=255) gcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATa < 2:1260399‑M2/81‑1 (MQ=255) gcattcgtaatgcgaaggtcggaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATa < 2:3004177‑M2/81‑1 (MQ=255) gtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTc < 1:2523172‑M2/87‑1 (MQ=255) gtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTc < 1:2298531‑M2/87‑1 (MQ=255) gtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTc < 1:3303642‑M2/87‑1 (MQ=255) gtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTc < 2:5106258‑M2/87‑1 (MQ=255) atgcgatggtcgtaggttcgactcctagtatcggcaccattaaaatgaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGa > 2:783229‑M2/51‑140 (MQ=255) atgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGcc < 2:180847‑M2/42‑1 (MQ=255) cgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACAt > 1:3807958‑M2/48‑140 (MQ=255) ggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAgg < 1:1272303‑M2/97‑1 (MQ=255) ggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAgg < 2:2649482‑M2/97‑1 (MQ=255) ggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAgg < 1:4550506‑M2/97‑1 (MQ=255) ggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAgg < 1:1570973‑M2/97‑1 (MQ=255) ggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAgg < 1:5224252‑M2/97‑1 (MQ=255) ggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAgg < 2:3776389‑M2/97‑1 (MQ=255) gtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTCCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGc < 2:4235323‑M2/98‑1 (MQ=255) gtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgt > 1:2410422‑M2/40‑140 (MQ=255) taggttcgactcctattatctgcaccattaaattctaaGAGTTTCCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCACTTCATCACAATACTGTTCTGACATCAGGCAgtg < 2:2432353‑M2/102‑1 (MQ=255) taggtgcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACAACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgtg < 2:4983461‑M2/102‑1 (MQ=255) gaGGTTCGCCTCCTATGATCGGCAACATTGAAGGCAAAGAGTTACCCCATATTTAAATACACCCCGTTTCCTCCTGTGCCGTATTTGTGCCATGGTAACCTTGGCAATGCATCAAAATCCTGGTCCGACATCAGGCAgtg < 2:520646/139‑1 (MQ=255) cgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgtgcaggtg > 2:4885133‑M2/33‑140 (MQ=255) cgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCATGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgtgcaggtg > 2:3524702‑M2/33‑140 (MQ=255) gactcctattatcggcaccattaaaatcaaaGAGTTCCCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgtgcaggtgc > 1:1924383‑M2/32‑140 (MQ=255) gactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgtgcaggtgc > 1:299306‑M2/32‑140 (MQ=255) gactcctattatcggcaccattaaaatcaaaGAGGTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATAAGGCAgtgcaggtgc > 1:2199767‑M2/32‑140 (MQ=255) tcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCGTTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGa > 2:1744359‑M2/29‑140 (MQ=255) ctattatcggcaccagtaaaatcaaaGAGTTACCCCATATTTGAATACACCACGTTTCCTCCTGTGACGTATTTGTGCCATCGTAACCTTTGCACGTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGATGCAGACa > 2:2861110‑M2/27‑140 (MQ=255) attatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGTCAGTGCAGGTGCAGACAtt > 1:4984171‑M2/25‑140 (MQ=255) attatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACAtt > 2:1516708‑M2/25‑140 (MQ=255) attatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACAtt > 2:4640279‑M2/25‑140 (MQ=255) caccattacaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTTCCGTATTTGTGCCATTGTAACCTTGGAAATTCATCCAAATACTGTTCTGACATCAGGCAGTGCAGTTTCAGACAATTAAGCCaa > 2:1637972‑M2/17‑140 (MQ=255) caccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCaa > 1:4195207‑M2/17‑140 (MQ=255) accattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATGTAAGCCAAt > 1:1075390‑M2/16‑140 (MQ=255) cattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATtg > 1:262777‑M2/14‑140 (MQ=255) attaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATtgc < 1:992906‑M2/128‑1 (MQ=255) attaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATtgc < 2:953132‑M2/128‑1 (MQ=255) attaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTCGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATtgc < 1:3903398‑M2/128‑1 (MQ=255) aaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCcaa > 1:4712547‑M2/4‑139 (MQ=255) aaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCAt > 1:4815495‑M2/4‑140 (MQ=255) aaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCAt > 1:320251‑M2/4‑140 (MQ=255) aaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCAt > 1:1024102‑M2/4‑140 (MQ=255) aGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGGGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACAGCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCATTc > 2:844372‑M2/2‑140 (MQ=255) gagTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCATTCt < 1:886505/140‑1 (MQ=255) gagTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCATTCt < 1:4469987/140‑1 (MQ=255) | GCTATAACTTGGTGTTTTATAATATAAAGTATGTTGTTTTGATTGATTGCTCAAGTAGTTAAAAATGCATTAACATCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCATTCT > NZ_CP025268/296182‑296457 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |