BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,292,982	0	A	G	54.8%	‑5.5 / inf	274	noncoding (55/132 nt)	CXP41_RS06835	RtT sRNA
Reads supporting (aligned to +/- strand): ref base A (44/79); new base G (88/61); total (134/140)
Fisher's exact test for biased strand distribution p-value = 1.54e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 274 total aligned reads displayed.

GCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCG  >  NZ_CP025268/1292846‑1293114

gcttGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGc                                                                                                                                   >  1:2790310/4‑140 (MQ=255)

 cttGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCt                                                                                                                                  <  1:335134/138‑1 (MQ=255)

  ttGGCCAGAATAATTGATTGCGGAAGCGTGTGAGCCTTCTGCGGCGTGTGAAAGTGCTGATGGCGGGGGAAGGATTCGACCGCGCGGCGATCGGCG‑CCTTCGGCGTGGTTGCCTGCGGCAACGCTCCCCCGCTGCCGCTc                                                                                                                                 >  2:2479968/2‑140 (MQ=255)

     ggCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAg                                                                                                                              >  1:259272/1‑140 (MQ=255)

      gCAGAATGTTGGATTGGGGATTCGTTTGAGGATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGc                                                                                                                             <  2:1504406/140‑1 (MQ=14)

       aaGAATAGCTGATTGCGGATGAGTTAGAGAATTTCGGGACTTAGGAGAGCGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGGCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCGCGAGcc                                                                                                                            <  2:4561188/139‑1 (MQ=14)

        aGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCg                                                                                                                           <  1:719386/140‑1 (MQ=255)

        aGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCg                                                                                                                           <  1:692687/140‑1 (MQ=255)

          aaTATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGaa                                                                                                                         >  1:4282204/1‑140 (MQ=255)

           atatTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAc                                                                                                                        <  1:1652395/140‑1 (MQ=255)

            tatTTGATTGGGGATTGGTTTGAGAATTCCGGGGCTTTTGAACGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAcc                                                                                                                       <  1:4236644/140‑1 (MQ=255)

            tatTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAcc                                                                                                                       <  1:700149/140‑1 (MQ=255)

               ttGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTa                                                                                                                    >  1:4865775/1‑140 (MQ=255)

                    tGCGGTTTGGTTTGGGGATTCGGGGGCTTTTGGAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                               <  2:4738611/140‑1 (MQ=11)

                    tGCGGCTTCGTTGGAGACTTCGGGGGCTTTTGCAAGTGAGGGGGGGGGGGGGAGGATTACTCAGCGCTGCGCGCGTCGCCCTGCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                               <  2:4093802/140‑1 (MQ=11)

                    tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                               >  2:4947352/1‑140 (MQ=255)

                    tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                               >  1:1328551/1‑140 (MQ=255)

                    tGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                               <  1:2657054/140‑1 (MQ=255)

                    tGCGGATGCGGGTGAGAATTCCGGGGCTTTGGAAAGTGATGGTGGTGGGGGAAGGATTACGCAGCGCTGCGCGCGTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGa                                                                                                               <  2:860755/140‑1 (MQ=14)

                      gggATTCGTTTGAGGATTCCGGGGCTTTTGGAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAg                                                                                                             <  2:242744/139‑1 (MQ=14)

                      cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTGAG‑GTCGCTGCCGGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAGTCGAAg                                                                                                             >  2:1005324/1‑140 (MQ=14)

                      cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAg                                                                                                             >  2:4247321/1‑140 (MQ=255)

                      cGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAg                                                                                                             <  2:3200624/140‑1 (MQ=255)

                           tcgtttGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTtct                                                                                                        <  2:3852422/136‑1 (MQ=255)

                                       tCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAGCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCg                                                                                            >  1:3797635/1‑140 (MQ=255)

                                        ccGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                           <  1:2837355/140‑1 (MQ=37)

                                        ccGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                           <  1:1485559/140‑1 (MQ=37)

                                        ccGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGc                                                                                           <  1:4715409/140‑1 (MQ=37)

                                         cGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTAGTGGAAGCTTCTCATGCTTCCCCGcc                                                                                          >  2:2090283/1‑139 (MQ=255)

                                          ggggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAt                                                                                         <  1:4138341/140‑1 (MQ=25)

                                          ggggCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCAt                                                                                         <  1:4625764/140‑1 (MQ=25)

                                             ggtttaGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                      <  2:720041/138‑1 (MQ=12)

                                             gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                      <  2:1129371/140‑1 (MQ=18)

                                             gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                      <  2:3223803/140‑1 (MQ=18)

                                             gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                      <  2:3603950/140‑1 (MQ=18)

                                             gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                      <  1:5150929/140‑1 (MQ=18)

                                             gCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                      <  1:5118221/140‑1 (MQ=18)

                                               ttttGAAAGTGATGGTAGTGGGGGAAGGATTACTCACCGCTGCGCGCTTCGCCCTTCGG‑TTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCa                                                                                    <  1:2978122/140‑1 (MQ=255)

                                                     aaGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAatat                                                                              <  1:176742/140‑1 (MQ=18)

                                                          aTGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGGTTCTCATCCTTCCCCGCATGGTCAGAATATTTAAt                                                                         >  2:1979395/1‑140 (MQ=255)

                                                                gtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                      >  1:1605101/1‑121 (MQ=17)

                                                                   ggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATGTTTAATTGCGGATTc                                                                >  2:763641/1‑140 (MQ=255)

                                                                   ggggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCGGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGTCAGAATATTTTTTTGCGGAGTc                                                                >  2:2648831/1‑140 (MQ=11)

                                                                     ggAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATGGCGGATTCGt                                                              >  2:4987525/1‑140 (MQ=11)

                                                                        aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCTTGCGGCAACGCTCTCTCGCTCGCGCTCGAGTCCAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTgg                                                           >  2:2920088/1‑140 (MQ=11)

                                                                        aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTgg                                                           >  1:2508837/1‑140 (MQ=11)

                                                                        aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAACCTTCTCATCCTTCCCCGCCTGGGCCGAATAATTAATAGCGCATTCGTTgg                                                           >  1:1077427/1‑140 (MQ=11)

                                                                        aGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGaa                                                                                                              <  1:2258334/89‑1 (MQ=25)

                                                                         ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTggg                                                          <  2:99663/140‑1 (MQ=11)

                                                                         ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTggg                                                          <  1:3041391/140‑1 (MQ=11)

                                                                         ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTggg                                                          <  1:4967943/140‑1 (MQ=11)

                                                                         ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTggg                                                          <  1:3576708/140‑1 (MQ=11)

                                                                         ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTggg                                                          <  1:3874033/140‑1 (MQ=11)

                                                                             tACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGt                                                      >  1:5041945/1‑140 (MQ=11)

                                                                             tACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGt                                                      >  2:5086039/1‑140 (MQ=11)

                                                                              aCTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGtt                                                     >  1:3473920/1‑140 (MQ=11)

                                                                              aCTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGtt                                                     >  2:2286556/1‑140 (MQ=11)

                                                                                   gcgcTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg                                                <  1:1025193/140‑1 (MQ=14)

                                                                                   gcgcTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg                                                <  2:605641/140‑1 (MQ=14)

                                                                                    cgcTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTTGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCTGCATGGGCAGAATATTTAATAGCGGATTCGGTGGGAGGTTCAGGGa                                               >  2:903166/1‑140 (MQ=11)

                                                                                    cgcTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGa                                               >  1:551859/1‑140 (MQ=14)

                                                                                    cgcTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGa                                               >  1:166449/1‑140 (MQ=14)

                                                                                    cgcTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGa                                               >  2:5206364/1‑140 (MQ=14)

                                                                                    cgcTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGGTCAGGGa                                               >  1:4044199/1‑140 (MQ=14)

                                                                                    cgcTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGTTGGGAAGTTCAGGGa                                               >  2:3670593/1‑140 (MQ=255)

                                                                                    cgcTGCGCGCTTCGCCCTTCGG‑GCCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGa                                               >  2:411680/1‑140 (MQ=14)

                                                                                       tGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtt                                            >  1:1000035/1‑140 (MQ=14)

                                                                                         cgcgcTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGCGTCGCACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCATAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                          >  2:3283862/1‑140 (MQ=14)

                                                                                         cgcgcTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCCGGGACtttt                                          >  2:551873/1‑140 (MQ=14)

                                                                                         cgcgcTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAggg                                                <  2:693102/134‑1 (MQ=14)

                                                                                         cgcgcTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                          >  2:1920470/1‑140 (MQ=255)

                                                                                         cgcgcTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                          >  2:1973611/1‑140 (MQ=14)

                                                                                         cgcgcTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                          >  2:1424460/1‑140 (MQ=14)

                                                                                         cgcgcTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                          >  2:2186435/1‑140 (MQ=255)

                                                                                         cgcgcTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                          >  1:5227461/1‑140 (MQ=14)

                                                                                         cgcgcTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTGTTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGTATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                          >  2:1411191/1‑140 (MQ=255)

                                                                                         cgcgcTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTGGGAAGTTCAGGGACtttt                                          >  2:234227/1‑140 (MQ=11)

                                                                                         cgcgcTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAAcc                                                                                                                       <  2:3964793/63‑1 (MQ=37)

                                                                                          gcgcTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTg                                         >  2:943421/1‑140 (MQ=14)

                                                                                                cGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTg                                   <  1:3663099/140‑1 (MQ=14)

                                                                                                 gCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                  <  1:1381144‑M1/140‑1 (MQ=255)

                                                                                                 gCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                  <  1:2345382‑M1/140‑1 (MQ=255)

                                                                                                 gCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGA                                  >  1:2185868‑M1/1‑140 (MQ=255)

                                                                                                      tCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTG                             >  2:3440676‑M1/1‑140 (MQ=255)

                                                                                                      tCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCTTggg                                                                                      >  2:757416/1‑83 (MQ=255)

                                                                                                      tCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATggg                                                                                      <  1:757921/83‑1 (MQ=25)

                                                                                                            gcgTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTTGTCGATGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGG                        >  2:2969919‑M1/2‑140 (MQ=255)

                                                                                                             cGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGG                       >  1:3140829‑M1/1‑140 (MQ=255)

                                                                                                              gTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATAGGCAGAATATTTAATTGCGGATTCGTTGCGAAGATCAGGGACTTTTGAAAGTGATGGTGGTGGGGG                      >  2:2664788‑M1/1‑140 (MQ=255)

                                                                                                               ttGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGA                     <  1:4419620‑M1/140‑1 (MQ=255)

                                                                                                                tGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAA                    <  2:1316614‑M1/140‑1 (MQ=255)

                                                                                                                       ggCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcg             <  1:1961914‑M1/140‑3 (MQ=255)

                                                                                                                       ggCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcg             <  1:5010315‑M1/140‑3 (MQ=255)

                                                                                                                       ggCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcg             <  1:4055249‑M1/140‑3 (MQ=255)

                                                                                                                        gCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcga            >  1:465274‑M1/1‑137 (MQ=255)

                                                                                                                         cAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaa           >  1:456426‑M1/1‑136 (MQ=255)

                                                                                                                            cGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTagaacct        >  2:5178577‑M1/1‑133 (MQ=255)

                                                                                                                               tctctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGGAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcg     <  2:430829‑M1/140‑11 (MQ=255)

                                                                                                                               tctctcGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcg     <  2:5123908‑M1/140‑11 (MQ=255)

                                                                                                                                  ctcGCTGGCGCTCGAGTCGAACCGTGGTCGAAGCTTCTCAGCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTcgaaccttcgaag  <  2:3965689‑M1/140‑14 (MQ=255)

GCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGG‑GTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCG  >  NZ_CP025268/1292846‑1293114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`