BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,126,409	T→C	38 (TAA→TAG)	CXP41_RS05875 ←	YceO family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,126,409	0	T	C	100.0%	696.5 / NA	211	38 (TAA→TAG)	CXP41_RS05875	YceO family protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (157/54); total (157/54)

Only 100 of 211 total aligned reads displayed.

TCTTCATAAGTTTAGTGGGTTCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAATTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCGACGCATTAAATACTCCTGTAAAAACGGCC  >  NZ_CP025268/1126276‑1126545

tCTTCATAGGTTTAGTGGGTTCAGCATCATAGATGTTTGGTGAGTGCTGTAGAAGCAGGAATAAGCTCATTCAATTTTTCACGCTAAAGGAAACGGAGATTAAATATTTGTCAGTTTATTTCAGGACGAAAAGCTaaaaa                                                                                                                                    >  2:36263/1‑140 (MQ=255)

    cATAAGTTTAGTGGGTTCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATaaa                                                                                                                                <  1:5129410/140‑1 (MQ=255)

    cATAAGTTTAGTGGGTTCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATaaa                                                                                                                                >  1:1932221/1‑140 (MQ=255)

    cATAAGTTTACTGGGTTCAGCATCAGAGATGTCTTATGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATaaa                                                                                                                                <  2:2344853/140‑1 (MQ=255)

       aaGTTTAGTGGGTTCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAaca                                                                                                                             <  1:2497352/140‑1 (MQ=255)

        aggttAGTGGGTTCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTTACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTCTATGTCAGTGCGGAAGGCTAAAAATCAAacgc                                                                                                                            >  2:4571015/4‑138 (MQ=255)

         gTTTAGTGGGTTCAGCATCAGAGATGTCTGGTGAGTGCTGTAGACGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAAcaca                                                                                                                           <  1:3024747/140‑1 (MQ=255)

         gTTTAGTGGGTTCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGCTTAAATATTTGTCAGTTTATGTCAGTGCCGAAAACTAAAAATAAAAcaca                                                                                                                           <  2:3418755/140‑1 (MQ=255)

         gTTTAGTGGGTTCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAAcaca                                                                                                                           <  2:3762770/140‑1 (MQ=255)

            tAGTGGGTTCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTAGTCAGTTTATGTCAGTGTGGAAAACTAAAAATAAAACACATag                                                                                                                        >  2:3068203/1‑140 (MQ=255)

             aGTGGGTTCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATaga                                                                                                                       >  1:5153525/1‑140 (MQ=255)

              gTGGGTTCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATagat                                                                                                                      <  2:4990294/140‑1 (MQ=255)

                 ggTTCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCAGGAATGATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAATCACATagatcag                                                                                                                   >  1:4568706/1‑140 (MQ=255)

                   ttCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCCGGACTAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAACTATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATagatcagat                                                                                                                 >  2:3272963/1‑140 (MQ=255)

                   ttCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATagatcagat                                                                                                                 >  2:4751477/1‑140 (MQ=255)

                   ttCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATagatcagat                                                                                                                 >  2:2729479/1‑140 (MQ=255)

                   ttCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATagatcagat                                                                                                                 >  2:2694694/1‑140 (MQ=255)

                   ttCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATagatcagat                                                                                                                 >  1:85389/1‑140 (MQ=255)

                    tCAGCATCAGAGATGTCTTGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAGTTTTTCACGCTAAATGAAAGGGAGATTAAGTATGTCTCAGTGTATGGCAGTGCGCGAAACTAATAATAAAACACATagatcagatc                                                                                                                >  2:164421/1‑140 (MQ=255)

                    tCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATagatcagatc                                                                                                                >  1:3473434/1‑140 (MQ=255)

                           cAGACATGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAAtt                                                                                                         <  2:1721971/140‑1 (MQ=255)

                             gagaTGTCTGGTGAGTGCTGTAGTAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAGGGGTAGATTAAATATTTGTCAGGTTATGTCAGTGCGGAAAACTGAAAAGAAAGGAGATAGAGCAGATCGATAATTgt                                                                                                       >  2:1394801/1‑139 (MQ=255)

                             gagaTGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGc                                                                                                       >  2:964699/1‑140 (MQ=255)

                             gagaTGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGc                                                                                                       >  1:3628872/1‑140 (MQ=255)

                             gagaTGGCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGc                                                                                                       >  1:3687545/1‑140 (MQ=255)

                                aTGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCcaa                                                                                                    >  1:4080341/1‑140 (MQ=255)

                                  gTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTCAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAATCACATAGATCAGATCAATAATTGCcaaca                                                                                                  >  2:466316/1‑140 (MQ=255)

                                  gTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCcaaca                                                                                                  >  1:563464/1‑140 (MQ=255)

                                  gTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCcaaca                                                                                                  >  1:526442/1‑140 (MQ=255)

                                  gTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCcaaca                                                                                                  >  1:711231/1‑140 (MQ=255)

                                  gTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCcaaca                                                                                                  >  2:2220972/1‑140 (MQ=255)

                                  gTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCcaaca                                                                                                  >  1:3016537/1‑140 (MQ=255)

                                  gTCTGGAGAGTGGTGTGGAAGGAGGAATAATCTCATGCGATTTATCAGGCAAAATGAGAGGAAGATTCCATATTTGTCAGATAGTGTCAGTGCGGTACACAACAAATGAAACCGATAGATCAGATCCATAATAGCcaaca                                                                                                  >  2:1804063/1‑140 (MQ=255)

                                     tGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATc                                                                                               >  1:3551745/1‑140 (MQ=255)

                                     tGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATc                                                                                               >  1:1478167/1‑140 (MQ=255)

                                     tGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATc                                                                                               >  2:1616989/1‑140 (MQ=255)

                                        tGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGGGGAAAACTAAAACTAAAACACATAGATCAGATCCATAATTGCCAACAATaccc                                                                                            >  2:5264843/1‑140 (MQ=255)

                                        tGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATcccc                                                                                            >  1:5180397/1‑140 (MQ=255)

                                          aGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGGAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTCCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAGCTATCCCCag                                                                                          >  2:3925295/1‑140 (MQ=255)

                                          aGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCag                                                                                          >  2:53701/1‑140 (MQ=255)

                                            tGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAGAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCagag                                                                                        >  1:4164275/1‑140 (MQ=255)

                                            tGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCagag                                                                                        >  2:587336/1‑140 (MQ=255)

                                            tGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCagag                                                                                        >  2:5328872/1‑140 (MQ=255)

                                            tGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCagag                                                                                        >  2:3831292/1‑140 (MQ=255)

                                             gCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAAcaca                                                                                                                           <  2:1514635/104‑1 (MQ=255)

                                              cTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGaa                                                                                      <  1:355533/140‑1 (MQ=255)

                                                 tAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGaaaaa                                                                                   >  1:1265571/1‑140 (MQ=255)

                                                     aGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATa                                                                               <  2:2933741/140‑1 (MQ=255)

                                                      gCATGAATAACTTCATTCAATTTTTCACGCTAAATGCAAAAGAGGTTAAATATTTGTCAGTTTATGTCCGTGCGGAAAACAAAAAATAAAACACAAAGATCAGGTCGCTAATAGCGAACAATCCCCAGAAAAAACAATaa                                                                              >  2:1203641/1‑140 (MQ=255)

                                                      gCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATaa                                                                              >  1:1147965/1‑140 (MQ=255)

                                                      gCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATaa                                                                              >  2:2835946/1‑140 (MQ=255)

                                                      gCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATaa                                                                              >  1:539306/1‑140 (MQ=255)

                                                        aGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATaaaa                                                                            >  2:5119189/1‑139 (MQ=255)

                                                         ggACTAATCTCATTCCATTTTTCACGCGAACCGACAGGGAGATTAACTTCTTATCAGTTCCCGTCAGTGCGCCAAACTACAAAAGCACCACCTAGTTCAGATCCATAATTGCCACCAATCCCCAGAGAATAAGAtcacgc                                                                           >  2:3916289/1‑135 (MQ=255)

                                                         ggAATAATCTCATTCAATTTTTCACGCTAAATGAAGGGGAGATTAAATATTTGTCAGTTTATGGCAGAGGGGAAGACTAAAGATAAGACAGATGGATGAGGTCCATAATTGCAAAAAATCCCCAGAGAAAAAGATAAAgg                                                                           >  2:3151864/1‑139 (MQ=255)

                                                         ggAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGc                                                                           >  2:3475989/1‑140 (MQ=255)

                                                         ggAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGc                                                                           >  1:2207686/1‑140 (MQ=255)

                                                           aataatCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCAt                                                                         >  2:105547/1‑140 (MQ=255)

                                                               atCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGa                                                                     <  1:2342928/140‑1 (MQ=255)

                                                                   cATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCt                                                                 <  2:3423641/140‑1 (MQ=255)

                                                                   cATTAAATGTTTCACGCTAAATGAAAGAGATATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGTGAAAAAGATAAAGCATCAGATGCt                                                                 <  2:757405/140‑1 (MQ=255)

                                                                    aTTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAGAACTAAAAATAAAAAACATAGATCAGATCAATAATTGCCAACAAACCCCAAAGAAAAAGATAAAGCATCATATGCTc                                                                >  2:4165468/1‑140 (MQ=255)

                                                                    aTTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTc                                                                >  2:1935827/1‑140 (MQ=255)

                                                                    aTTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTc                                                                >  1:202177/1‑140 (MQ=255)

                                                                    aTTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTc                                                                >  1:514694/1‑140 (MQ=255)

                                                                      tCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTcgc                                                              <  1:3781254/140‑1 (MQ=255)

                                                                      tCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTcgc                                                              <  1:366740/140‑1 (MQ=255)

                                                                             ttCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAAtatt                                                       <  1:2694694/140‑1 (MQ=255)

                                                                              tCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAAtatta                                                      >  2:5121720/1‑140 (MQ=255)

                                                                                  gCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATtga                                                  <  1:1823469/140‑1 (MQ=255)

                                                                                  gCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATtga                                                  <  2:1389533/140‑1 (MQ=255)

                                                                                  gCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATtga                                                  <  1:3077475/140‑1 (MQ=255)

                                                                                       aTGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATgaga                                             <  1:2617219/140‑1 (MQ=255)

                                                                                       aTGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATgaga                                             <  1:746095/140‑1 (MQ=255)

                                                                                            aGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTg                                        >  1:1091242/1‑140 (MQ=255)

                                                                                                agaTTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGAGAATATTATTGATGAGATAGTGCaaa                                    >  2:829769/1‑139 (MQ=255)

                                                                                                  aTTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATGAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGAGAGTGCAACAg                                  >  1:1351074/1‑140 (MQ=255)

                                                                                                  aTTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGaa                                                                                      >  2:4408708/1‑88 (MQ=255)

                                                                                                  aTTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAg                                  >  1:3358250/1‑140 (MQ=255)

                                                                                                  aTTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAg                                  >  1:2382312/1‑140 (MQ=255)

                                                                                                  aTTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAg                                  >  2:730912/1‑140 (MQ=255)

                                                                                                  aTTAAATATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAg                                  >  2:1041999/1‑140 (MQ=255)

                                                                                                     aaaTATTTGTCCTTTAATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATACATAATTGTCAACACCCCCCAGAGAACACGATCAAGAATCAGCTGCTCGCGAATATTATTGCTGAGATAGTGCACCAGCCg                               <  2:681726/140‑1 (MQ=255)

                                                                                                     aaaTATTTGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCg                               <  1:4835150/140‑1 (MQ=255)

                                                                                                           ttGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCGACGCAt                         >  2:4279869/1‑140 (MQ=255)

                                                                                                            tGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATACTTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCGACGCAtt                        <  1:3817771/140‑1 (MQ=255)

                                                                                                            tGTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCGACGCAtt                        >  1:2787331/1‑140 (MQ=255)

                                                                                                             gTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCGACGCATTa                       >  1:3737254/1‑140 (MQ=255)

                                                                                                             gTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCGACGCATTa                       >  1:3211999/1‑140 (MQ=255)

                                                                                                             gTCAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCGACGCATTa                       >  1:1527730/1‑140 (MQ=255)

                                                                                                               cAGTTTATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCGACGCATTaaa                     <  1:2220972/140‑1 (MQ=255)

                                                                                                                  tttATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCGACGCATTAAATAc                  <  1:964699/140‑1 (MQ=255)

                                                                                                                   ttATGTCAGTGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCGACGCATTAAATACt                 <  1:5110/140‑1 (MQ=255)

                                                                                                                            ttcGGAAAACTAAAAATAAAACACATAGATCAGACCCATAATTGCCAACAATCCCCCGATACACAGATAAAGCATCAGATGCTCACGAATATTATTGACGAGATAGTGCAACAGCCGACGCATTATATACTCCTGTaaaa        >  2:2068948/3‑140 (MQ=255)

                                                                                                                            tGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCGACGCATTAAATACTCCTGTaaaa        >  1:3186564/1‑140 (MQ=255)

                                                                                                                            tGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCGACGCATTAAATACTCCTGTaaaa        >  1:1702358/1‑140 (MQ=255)

                                                                                                                            tGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCGACGCATTAAATACTCCTGTaaaa        >  1:1759121/1‑140 (MQ=255)

                                                                                                                            tGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCGACGCATTAAATACTCCTGTaaaa        >  1:623938/1‑140 (MQ=255)

                                                                                                                            tGCGGAAAACTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCGACGCATCAAATACTCCTGTaaaa        >  1:4351791/1‑140 (MQ=255)

                                                                                                                                  aaaCTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCGACGCATTAAATACTCCTGTAAAAACGGcc  <  1:4496680/140‑1 (MQ=255)

TCTTCATAAGTTTAGTGGGTTCAGCATCAGAGATGTCTGGTGAGTGCTGTAGAAGCAGGAATAATCTCATTCAATTTTTCACGCTAAATGAAAGGGAGATTAAATATTTGTCAGTTTATGTCAGTGCGGAAAATTAAAAATAAAACACATAGATCAGATCCATAATTGCCAACAATCCCCAGAGAAAAAGATAAAGCATCAGATGCTCGCGAATATTATTGATGAGATAGTGCAACAGCCGACGCATTAAATACTCCTGTAAAAACGGCC  >  NZ_CP025268/1126276‑1126545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`