| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 1,762,540 | T→C | pseudogene (1000/1000 nt) | ldtE ← | L,D‑transpeptidase LdtE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 1,762,540 | 0 | T | C | 99.3% | 932.8 / NA | 278 | pseudogene (1000/1000 nt) | ldtE | L,D‑transpeptidase LdtE |
| Reads supporting (aligned to +/- strand): ref base T (1/0); major base C (161/114); minor base G (2/0); total (164/114) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 278 total aligned reads displayed.
TTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGC‑‑‑‑‑TTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATAC > NZ_CP025268/1762403‑1762664 | ttCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTa > 1:1047676/1‑140 (MQ=255) ctAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCAc < 2:4627024/140‑1 (MQ=255) tAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCAcg < 1:2599312/140‑1 (MQ=255) aaGATGACGCAGCTCGTGCTAACCAGCGTCTGGACACCATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCAcgcg < 1:3737858/140‑1 (MQ=255) aaGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCAcgcg < 1:611132/140‑1 (MQ=255) aaGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCAcgcg < 2:472212/140‑1 (MQ=255) aaGAGGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAAGGGCGAACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCAcgcg < 1:2404194/140‑1 (MQ=255) gATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTa < 2:2384160/140‑1 (MQ=255) gACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACa > 2:2455236/1‑140 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACata > 1:4842399/1‑140 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACata > 2:4487108/1‑140 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACata > 1:221792/1‑140 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACata > 2:5261959/1‑140 (MQ=255) cGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACata < 1:631426/140‑1 (MQ=255) cTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTccc > 1:3337210/1‑140 (MQ=255) cTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTccc > 1:3467424/1‑140 (MQ=255) tGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGc > 1:1466100/1‑140 (MQ=255) gCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCt < 2:4536067‑M1/140‑2 (MQ=255) cTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtc < 1:5057506‑M1/140‑3 (MQ=255) gCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttca < 2:4824535‑M1/140‑10 (MQ=255) cGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcac > 1:727807‑M1/1‑130 (MQ=255) cGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcac > 2:5136144‑M1/1‑130 (MQ=255) cGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TCCtctggttccc > 2:4122683‑M1/1‑130 (MQ=255) cTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccat < 1:777538‑M1/140‑14 (MQ=255) tGGAGAACATGGCTACTAAATACCGCAAGTAATAGTACATGGGAAGTGAAAAATGGCGCACATGGTGCGCCATTTTGTTTGTCTGCCGGTTACCGCTACTGCGTCACGCGTAACATATTGCGT‑‑‑‑‑TGCtctggttcacaatt > 2:5158909‑M1/1‑126 (MQ=255) tGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccatt > 1:71417‑M1/1‑126 (MQ=255) acaacaTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctg > 2:642610‑M1/1‑123 (MQ=255) acaTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgc < 1:643744‑M1/140‑21 (MQ=255) acaTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgc < 2:3007173‑M1/140‑21 (MQ=255) caTGGCTACTAAATTCAGCAAGCAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTCCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCCCGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgct < 1:2959727‑M1/140‑22 (MQ=255) caTGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCAGGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgct > 1:4917745‑M1/1‑119 (MQ=255) ggCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgac > 1:4131079‑M1/1‑116 (MQ=255) gCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgact < 1:4384804‑M1/140‑26 (MQ=255) ctactaAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TTCtctggttcaccattctgcgctgactc > 1:399948‑M1/1‑114 (MQ=255) ctactaAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactc > 1:2638063‑M1/1‑114 (MQ=255) tactaAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactct < 1:4698397‑M1/140‑28 (MQ=255) aaaTACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactg > 1:255382‑M1/1‑109 (MQ=255) aaaTACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactg > 1:49799‑M1/1‑109 (MQ=255) tACCGCAAGTACTAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaag < 1:4534661‑M1/140‑35 (MQ=255) cGCAAGTAATAGTACCTGTGAAGTGAACAATGGCGCACATTCTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCG‑‑‑‑‑TGCtctagttcaccattctgcgctgactctactgaaggcg < 2:4169617‑M1/140‑38 (MQ=255) cGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcg > 2:5059927‑M1/1‑103 (MQ=255) cGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcg > 1:1775090‑M1/1‑103 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgca > 1:1884765‑M1/1‑101 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgca > 1:2096404‑M1/1‑101 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgca > 1:932791‑M1/1‑101 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgca > 1:2325229‑M1/1‑101 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgca > 2:2910254‑M1/1‑101 (MQ=255) cAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgca > 1:3143221‑M1/1‑101 (MQ=255) gTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattg > 2:2602054‑M1/1‑98 (MQ=255) gTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattg > 1:1593816‑M1/1‑98 (MQ=255) gTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattg > 2:3253818‑M1/1‑98 (MQ=255) tACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgcttgctg > 1:1985044‑M1/1‑91 (MQ=255) aCCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgc > 2:4018375‑M1/1‑90 (MQ=255) aCCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGGCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgc > 2:4761717‑M1/1‑90 (MQ=255) aCCTCTGAAGTGAAAAATTGCGCACATTGTGCGCCATTTTTTTTGTATGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctccgctgactctcctcaaggcgctttgctggctgc > 2:4611160‑M1/1‑90 (MQ=255) ccTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcg > 2:4322024‑M1/1‑89 (MQ=255) ccTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcg > 2:1766543‑M1/1‑89 (MQ=255) tgtgAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACCTATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggg < 2:3823949‑M1/140‑54 (MQ=255) tgtgAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggg < 1:1085367‑M1/140‑54 (MQ=255) tgtgAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggg > 1:1695699‑M1/1‑87 (MQ=255) tgtgAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggg > 1:3241783‑M1/1‑87 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctgtctgcggtg > 2:3661628‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggga > 2:389168‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggga > 1:2730753‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcggga > 1:216188‑M1/1‑86 (MQ=255) gtgaagtgaaAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccatgctgcgctgactctactgaaggcgcattgctggctgcggga > 1:4913713‑M1/1‑86 (MQ=255) tgaagtgaaAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggag > 2:2209123‑M1/1‑85 (MQ=255) tgaagtgaaAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggag > 2:2744074‑M1/1‑85 (MQ=255) tgaagtgaaAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggag > 2:2902622‑M1/1‑85 (MQ=255) aaaaaTGTCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCTCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctcc > 1:1679879‑M1/1‑78 (MQ=255) aaaaaTGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctcc < 2:2244081‑M1/140‑63 (MQ=255) aaaaTGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctcca < 1:2455236‑M1/140‑64 (MQ=255) aaaaTGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttaaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctcca < 1:1184615‑M1/140‑64 (MQ=255) aaTGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctacgggagttgctccact > 1:4354026‑M1/1‑75 (MQ=255) cgcACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTa < 2:2791081/56‑1 (MQ=255) cgcACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTa > 1:2791081/1‑56 (MQ=255) cgcACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctca > 1:3058007‑M1/1‑70 (MQ=255) acaTTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccg < 2:2306986‑M1/140‑74 (MQ=255) acaTTGTGCGCCATTTGTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccg < 1:2971988‑M1/140‑74 (MQ=255) caTTTTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccga < 2:1221280‑M1/140‑75 (MQ=255) aTTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaa < 2:769902‑M1/140‑76 (MQ=255) aTTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaa < 2:1634932‑M1/140‑76 (MQ=255) aTTGTGCGCCATTTTTTTAGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaa < 2:3797895‑M1/140‑76 (MQ=255) tgCGCCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCATAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccg > 1:5174779‑M1/1‑61 (MQ=255) cgcCATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccgga > 2:1511831‑M1/1‑59 (MQ=255) ccATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggata < 2:1466100‑M1/140‑84 (MQ=255) cATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggatac > 1:2641395‑M1/1‑56 (MQ=255) cATTTTTTTTGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggatac > 2:3487352‑M1/1‑56 (MQ=255) tttttttttGTCTGCCGTTTACTGCTACTGCGTCACGCGTAACATATTCCCTTTCTCTGG‑‑‑‑‑TTCACCATTTTGCGCTGACTCTACTGAAGGCTCGTTGCTGTCTGCGGGAGTTGCTCCACTGCTCACCGCAACCGGATAcc > 2:3210966/2‑140 (MQ=255) ttttttGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctg < 1:798314‑M1/140‑89 (MQ=255) ttttttGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCgctggttcagcattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctg < 2:2031347‑M1/140‑89 (MQ=255) ttttGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcc < 2:3041279‑M1/140‑91 (MQ=255) ttttGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcc < 2:3331491‑M1/140‑91 (MQ=255) tGTCTGCCGTTTCCCGCTCCTGCGTCCCACGTCACTCATTCCCT‑‑‑‑‑TGCTCTGGTTCACCCTTCTGCGCTGACCATCCTGAAGGCCCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGCACCCGGATACCCTGCCcga < 2:681382/140‑1 (MQ=255) tGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACCTATTCACT‑‑‑‑‑CGCtctggttcaccattctgcgctgactctactgacggagaattgctggccgcggaagttgctacactgctcaccgaacccgcataccctggccga < 2:528780‑M1/140‑94 (MQ=255) tGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccga < 2:1832258‑M1/140‑94 (MQ=255) tGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccga < 1:3995715‑M1/140‑94 (MQ=255) tGTCTGCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccga < 1:3497824‑M1/140‑94 (MQ=255) gCCGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgata < 2:4842399‑M1/140‑99 (MQ=255) ccGTTTACCGCTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGCtctggttcaccattctgcgctgactctactgaaggcgcattgctggctgcgggagttgctccactgctcaccgaaaccggataccctgcccgacgatac > 2:1062932‑M1/1‑41 (MQ=255) | TTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACATTGTGCGCCATTTTTTTTGTCTGCCGTTTACCGTTACTGCGTCACGCGTAACATATTCCCT‑‑‑‑‑TGC‑‑‑‑‑TTCACCATTCTGCGCTGACTCTACTGAAGGCGCATTGCTGGCTGCGGGAGTTGCTCCACTGCTCACCGAAACCGGATACCCTGCCCGACGATAC > NZ_CP025268/1762403‑1762664 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |