| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 2,016,041 | T→C | pseudogene (351/1129 nt) | CXP41_RS10705 ← | DUF5503 domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 2,016,041 | 0 | T | C | 99.2% | 398.7 / NA | 120 | pseudogene (351/1129 nt) | CXP41_RS10705 | DUF5503 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (48/71); minor base A (0/1); total (48/72) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 120 total aligned reads displayed.
TCCACATTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAGTGCAAT > NZ_CP025268/2015905‑2016173 | tCCACATTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTaa > 2:2557464/1‑140 (MQ=255) acaTTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAAttt > 1:3246521/1‑140 (MQ=255) acaTTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAAttt > 2:4535514/1‑140 (MQ=255) caTTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTa > 1:2261905/1‑140 (MQ=255) caTTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTa > 1:346439/1‑140 (MQ=255) aTTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTAt > 1:4221992/1‑140 (MQ=255) aTTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTAt > 2:4020521/1‑140 (MQ=255) aTTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTAt > 1:3516333/1‑140 (MQ=255) aTTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTAt > 2:5199813/1‑140 (MQ=255) tGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAAtg < 1:3922862/140‑1 (MQ=255) aaGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAAtggg < 2:1380291/140‑1 (MQ=255) aaGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAAtggg < 2:4820869/140‑1 (MQ=255) aaGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAAtggg < 2:1657036/140‑1 (MQ=255) aaGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAAtggg < 2:1657222/140‑1 (MQ=255) aaGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAAtggg > 1:2620597/1‑140 (MQ=255) aaGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAAtggg < 1:2800615/140‑1 (MQ=255) aGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAAtgggt < 1:3986977/140‑1 (MQ=255) aGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAAtgggt < 1:3987053/140‑1 (MQ=255) aGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAAtgggt < 2:1689291/140‑1 (MQ=255) aTTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATgggtgggt < 1:432462/140‑1 (MQ=255) cGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTAc < 1:3763939/140‑1 (MQ=255) aTGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCa < 2:115104/140‑1 (MQ=255) ccTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑cc < 1:1642769/140‑1 (MQ=255) ccTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑cc > 1:1272864/1‑140 (MQ=255) ccTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑cc < 1:688221/140‑1 (MQ=255) ttttACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGAt < 2:1393960/140‑1 (MQ=255) cTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGAtttttt > 2:3716389/1‑140 (MQ=255) aaTTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTa > 2:5056307/1‑140 (MQ=255) aaTTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTa > 2:5056405/1‑140 (MQ=255) aTTAGCCCAGTCGCTGCGACATTTGCAAAGTATGAAATCTTTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTACTCGATATAAACTCTAATTTATGCCGCATGGGTGGCTTACCAGTT‑CCCTGATTTTTTCTAt < 2:4591734/140‑1 (MQ=255) aTTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTAt < 2:4215703/140‑1 (MQ=255) aTTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTAt < 1:274421/140‑1 (MQ=255) aTTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTAt < 2:1123578/140‑1 (MQ=255) aTTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTAt < 1:3995385/140‑1 (MQ=255) aTTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTATAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTAt < 2:4215960/140‑1 (MQ=255) ttAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATc < 2:1644367/140‑1 (MQ=255) ttAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATc > 2:3958133/1‑140 (MQ=255) ttAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATc < 2:1644934/140‑1 (MQ=255) ttAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATc > 2:3927837/1‑140 (MQ=255) ttAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATc < 1:5199813/140‑1 (MQ=255) ttAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATc < 1:3831206/140‑1 (MQ=255) tAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCa < 2:735782/140‑1 (MQ=255) cAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGGAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATa < 1:3807278/140‑1 (MQ=255) cAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATa < 1:3594426/140‑1 (MQ=255) aGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATaa < 1:3138787/140‑1 (MQ=255) gTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTAt > 1:2590532/1‑131 (MQ=255) gTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATaaa > 2:2812009/1‑140 (MQ=255) gTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATaaa > 1:2185964/1‑140 (MQ=255) gTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATaaa > 1:2848149/1‑140 (MQ=255) gTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATaaa > 2:3469114/1‑140 (MQ=255) gTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATaaa > 2:2811993/1‑140 (MQ=255) cGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAAc < 1:4739749/140‑1 (MQ=255) cGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAAc < 1:1111069/140‑1 (MQ=255) cGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAAc < 1:4739748/140‑1 (MQ=255) cGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAAc < 1:4739124/140‑1 (MQ=255) aaaCCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATc < 1:5213227/140‑1 (MQ=255) aaaCCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATc < 1:3690092/140‑1 (MQ=255) tGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTtattat < 1:4398763/140‑1 (MQ=255) tGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGCGGTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTgattat > 2:3220475/1‑140 (MQ=255) aGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATc < 1:1459315/140‑1 (MQ=255) aGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATc < 2:558447/140‑1 (MQ=255) cTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCgag < 2:2849818/140‑1 (MQ=255) tGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCgaga < 2:1567823/140‑1 (MQ=255) ggAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGaa < 1:3469114/140‑1 (MQ=255) gcaagcTGTAATTTTCGTAAAGTTGTCTATAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGaa < 2:3890313/135‑1 (MQ=255) tGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAGAACCTATCTTATTATAAATCGAGAAATCTTg < 2:4167230/140‑1 (MQ=255) tGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTg > 1:2364343/1‑140 (MQ=255) gTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTTCCCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTg > 2:3740937/1‑140 (MQ=255) tttCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAGCCTATCTTATTATAAATCGAGAAATCTTGAAACCa < 1:4355335/140‑1 (MQ=255) tttCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCa < 1:1580288/140‑1 (MQ=255) tttCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCa < 2:3068046/140‑1 (MQ=255) tttCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCa < 2:3557269/140‑1 (MQ=255) tttCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCa < 1:3834918/140‑1 (MQ=255) ttCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCag < 2:3282505/140‑1 (MQ=255) ttCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCag < 1:2557464/140‑1 (MQ=255) tCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCaga > 1:4233503/1‑140 (MQ=255) cGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATACACTCTAATTTATGCCGACTGGGTGGGTTACTAGTT‑CCCTGATTTTTTCTATCATGAGAAAACCTATCTTATTATAAATTGAGACATCTTGAAACCtgag > 2:2791100/1‑140 (MQ=255) gTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAgaga > 1:2915493/1‑140 (MQ=255) aaaGTTGTCTAGATACTCTGCAATATTAGTCGATATAAACTCGAATCTAGGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTAACATGATAAAACCTATCTTATTATAAATTGAGAAATCTTGAAACCAGAGACt < 1:3199502/140‑1 (MQ=255) tCTAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCa > 2:3509655/1‑140 (MQ=255) tagtatctctGCAATATTAGTCGATATAAATTCTAATTTATGCAGAATGGGTGTGTTACCAGTT‑CCCTGATTTTTTCTATCATCCTAAAACGTGTCTTATTATAAATCGAGAAATCTTGCATTCCTAGACTATTATCAcc < 2:917101/134‑1 (MQ=255) tAGAAACTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCAcc < 1:5216365/140‑1 (MQ=255) aaCTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAACACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCAt < 1:3366086/140‑1 (MQ=255) aaCTCTGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCAt < 1:4535514/140‑1 (MQ=255) ctGCAATATTCGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGGTACCAGTT‑ACATGATTTTTTCTGTTATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACTAGAGACTATAATAACCCCATTcaa > 2:206084/1‑138 (MQ=255) ctGCAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAGCCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGa < 1:1305402/140‑1 (MQ=255) cAATATTAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATACTCACCCCATTCGAAat < 2:2253084/140‑1 (MQ=255) ttAGTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCt < 2:2235104/140‑1 (MQ=255) gTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAg > 1:1698659/1‑140 (MQ=255) gTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAg > 2:616829/1‑140 (MQ=255) gTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAg > 1:4670868/1‑140 (MQ=255) gTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAg > 1:1699248/1‑140 (MQ=255) gTCGATATAAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAg > 1:1952520/1‑140 (MQ=255) tataAACTCTAATTTATGCCGGATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAAGCTATCTTATTATAAATCGAGAAATCTTGAAACGAGAGACTGTAACCACCCCATTCGAAATATTCTGAGTGCaa > 2:4441173/1‑140 (MQ=255) tataAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGGCTATAATCACCCCATTCGAAATATTCTGAGCGCaa > 2:131128/1‑140 (MQ=255) tataAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCAt > 1:186207/1‑120 (MQ=255) tataAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAGTGCaa > 1:1451357/1‑140 (MQ=255) tataAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAGTGCaa > 1:1451011/1‑140 (MQ=255) ataAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAGTGCAAt < 2:2364343/140‑1 (MQ=255) ataAACTCTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAGTGCAAt < 1:4073426/140‑1 (MQ=255) | TCCACATTTTTTTTGAAGTCATTCGATGCGCCTTCTTTTACTGAATTAGCCCAGTCGCTGAAACCTTTGCAAAGTCTGGAATCTGTAATTTTCGTAAAGTTGTCTAGAAACTCTGCAATATTAGTCGATATAAACTTTAATTTATGCCGAATGGGTGGGTTACCAGTT‑CCCTGATTTTTTCTATCATGATAAAACCTATCTTATTATAAATCGAGAAATCTTGAAACCAGAGACTATAATCACCCCATTCGAAATATTCTGAGTGCAAT > NZ_CP025268/2015905‑2016173 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |