BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	2,800,937	C→T	C38Y (TGT→TAT)	yqaE ←	YqaE/Pmp3 family membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	2,800,937	0	C	T	100.0%	897.0 / NA	239	C38Y (TGT→TAT)	yqaE	YqaE/Pmp3 family membrane protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (53/186); total (53/186)

Only 100 of 240 total aligned reads displayed.

AGACCCATAGCTACCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATACACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAAT  >  NZ_CP025268/2800800‑2801070

 gACCCATAGCTACCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATAcc                                                                                                                                    <  1:4108348/140‑1 (MQ=255)

  aCCCATAGCTACCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATAccc                                                                                                                                   >  2:3605679/1‑140 (MQ=255)

  aCCCATAGCTACCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATAccc                                                                                                                                   <  1:2923786/140‑1 (MQ=255)

    ccATAGCTACCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCaa                                                                                                                                 <  2:4100138/140‑1 (MQ=255)

      atcgCTACCTCCTTCGTTAACGGAAAGACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGGTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATAAACAAGc                                                                                                                               <  2:3217222/137‑1 (MQ=255)

      atacatcccTCATTCGTTAACGGAATCACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGAAGAGCACAGGTTTAATCGCGGGTCTCCACCCAGGACGCGTGAATCAAACCGGGGATATACCCAAGc                                                                                                                               <  2:4227880/133‑1 (MQ=255)

      aTAGCTACCTCATTCGTTAACGGAAACACTCAGAACGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGc                                                                                                                               <  2:337440/140‑1 (MQ=255)

      aTAGCTACCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCTGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGc                                                                                                                               <  2:1246257/140‑1 (MQ=255)

      aTAGCTACCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGc                                                                                                                               <  1:3173709/140‑1 (MQ=255)

      aTAGCTACCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGc                                                                                                                               <  1:4747813/140‑1 (MQ=255)

      aTAGCTACCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGc                                                                                                                               <  1:562924/140‑1 (MQ=255)

       tcgCTACCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCa                                                                                                                              >  1:1056457/3‑140 (MQ=255)

       tAGATAACTCATTCTTGGACGGAAACACCCAGAAAGTGTAGCAGAGGAACGTGGCTCGTTAACGCCGTGGGGATGAGCACAGGTTTAATCGCGGGTTTGCATCTAGACCGCGGGAATCATACCGGGGATATTCCCAAGCa                                                                                                                              <  2:1509758/140‑1 (MQ=255)

         gCTACCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAgt                                                                                                                            >  1:1246344/1‑140 (MQ=255)

         gCTACCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAgt                                                                                                                            <  1:5045784/140‑1 (MQ=255)

            aCCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGc                                                                                                                               >  2:3982508/1‑134 (MQ=255)

            aCCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGc                                                                                                                               <  1:3982508/134‑1 (MQ=255)

            aCCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTc                                                                                                                         >  2:1468070/1‑140 (MQ=255)

            aCCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTc                                                                                                                         >  1:2259604/1‑140 (MQ=255)

            aCCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTc                                                                                                                         >  2:2849955/1‑140 (MQ=255)

            aCCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGGGAATCAAACCGGGGATATACCCAAGCAGTGTc                                                                                                                         >  1:682756/1‑140 (MQ=255)

             ccTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCa                                                                                                                        >  2:1154087/1‑140 (MQ=255)

              cTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGc                                                                                                                               >  2:3933913/1‑132 (MQ=255)

              cTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGc                                                                                                                               <  1:3933913/132‑1 (MQ=255)

              cTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCaa                                                                                                                       >  2:1216678/1‑140 (MQ=255)

              cTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCaa                                                                                                                       >  1:5180446/1‑140 (MQ=255)

              cTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCaa                                                                                                                       <  1:2763399/140‑1 (MQ=255)

               tCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAAc                                                                                                                      <  2:1975820/140‑1 (MQ=255)

               tCATTCGTTAACGGAAACACTCAGAAAGTGTAGAAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGCACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAAc                                                                                                                      <  1:4689181/140‑1 (MQ=255)

                cATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACa                                                                                                                     >  2:297473/1‑140 (MQ=255)

                 aTTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAg                                                                                                                    <  1:2789075/140‑1 (MQ=255)

                  ttCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGa                                                                                                                   >  1:1178494/1‑140 (MQ=255)

                      ttAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAatat                                                                                                               >  1:3024617/1‑140 (MQ=255)

                             aaaCACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTaataat                                                                                                        >  1:3658613/1‑140 (MQ=255)

                              aaCACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATg                                                                                                       <  2:2639892/140‑1 (MQ=255)

                              aaCACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATg                                                                                                       <  1:4034319/140‑1 (MQ=255)

                                    cAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGcc                                                                                                 <  2:2515525/140‑1 (MQ=255)

                                    cAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGcc                                                                                                 >  1:113139/1‑140 (MQ=255)

                                         aGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAACCCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAAcc                                                                                            <  1:5274959/140‑1 (MQ=255)

                                         aGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAAcc                                                                                            <  1:4390140/140‑1 (MQ=255)

                                         aGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAAcc                                                                                            <  2:1805093/140‑1 (MQ=255)

                                         aGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAAcc                                                                                            <  2:5181349/140‑1 (MQ=255)

                                         aGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAAcc                                                                                            <  2:2990648/140‑1 (MQ=255)

                                          gtgtAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCg                                                                                           <  1:1002320/140‑1 (MQ=255)

                                           tgtCGCAGAGGAACGCGGCGCGTTAACGCCGCGCGGATGAGCACAGGTTTAAGCGCGGGTTTGCACCCAGAACGCGTGAGTCAAACCGGTGATGTACCCAAGCAGTGTCAACAGAATATTAATAATGATCGCCCAACCGa                                                                                          <  2:2119252/140‑1 (MQ=255)

                                           tgtAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGa                                                                                          <  1:95747/140‑1 (MQ=255)

                                           tgtAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAAACGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGa                                                                                          <  1:3817799/140‑1 (MQ=255)

                                           ggtAGCAGGGGAGCGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGGGTGAATCAAACCGGGGATATGCCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGa                                                                                          <  2:825827/139‑1 (MQ=255)

                                            gtAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGaa                                                                                         <  1:1159203/140‑1 (MQ=255)

                                                cAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCt                                                                                     <  1:2633046/140‑1 (MQ=255)

                                                     gAACGCGGCGCGTTAACGCCGCGGGGATGAGCACATGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCCGTGGCAACAGAACATTAATAATGAACGCCCAACCGAACAATTTAcc                                                                                >  2:1159503/1‑140 (MQ=255)

                                                     gAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTAcc                                                                                >  2:4742858/1‑140 (MQ=255)

                                                     gAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTAcc                                                                                >  1:2246410/1‑140 (MQ=255)

                                                          cggcgCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTGACCGagca                                                                           >  2:775403/1‑140 (MQ=255)

                                                                       ccgcGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAgcgg                                                              <  1:426698/140‑1 (MQ=255)

                                                                       ccgcGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTGTACCGAGCAGCACGCCGAgcgg                                                              <  1:1279884/140‑1 (MQ=255)

                                                                         gcgGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAgcggcg                                                            >  2:514418/1‑140 (MQ=255)

                                                                                tGAGCATAGGTTTACTCGCCGGTGTGCACCCAGAAGGCGTGAATGAAACCGGGGATATCCCCACGCAGTGTCAACAGAATATTAATCATGAACGCCCAACCGACCCCTTTAACGCGCACCACGCCGAGCGGCGGCAGAat                                                     <  2:661930/140‑1 (MQ=255)

                                                                                  tgcctaGGTTTATTCGCGGGTTTGTTCCCAGAAGGCGTGGATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATGATGGACGCCCAACCGAACCCTTTACCGGGAAGCCCGCCGAGCGGCGGCAGAatgc                                                   <  2:311396/135‑2 (MQ=255)

                                                                                      caGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGCATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGt                                               <  2:4177342/140‑1 (MQ=255)

                                                                                         gTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATCTTAATAATGAACGCCCAACCGACCCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGtgat                                            <  1:2034265/140‑1 (MQ=255)

                                                                                         gTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGtgat                                            <  2:273404/140‑1 (MQ=255)

                                                                                           ttAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGtgatga                                          <  2:63450/140‑1 (MQ=255)

                                                                                              aTCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGa                                       <  1:1949266/140‑1 (MQ=255)

                                                                                              aTCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGa                                       <  2:3629856/140‑1 (MQ=255)

                                                                                                cgcgGGTTTGCACCCAGAACGCGTGAATCAAACCGGAGATATACCCAAGCATTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGAtt                                     <  1:297862/140‑1 (MQ=255)

                                                                                                   gggTTTGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATtctc                                  >  2:1704929/1‑140 (MQ=255)

                                                                                                      tttGCCCCCAGCACGCGTGAATCAAACCGGAGATATACCAAAGCAGTCTCCACACACTATCAATAATGAACGCCCAACCGCACCCTTTACCGAGCCGCACGCCGAGCGGAGGCAGAATGATCGTGATGACGATTCTCCAg                               <  2:342667/140‑1 (MQ=255)

                                                                                                       ttccACCCAGAACGCGTGCATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCAAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGa                              <  1:1830789/137‑1 (MQ=255)

                                                                                                       ttGCACCCAGAGCGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGa                              <  2:3351369/140‑1 (MQ=255)

                                                                                                       ttGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGCGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGa                              <  1:441761/140‑1 (MQ=255)

                                                                                                       ttGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGa                              <  2:215451/140‑1 (MQ=255)

                                                                                                       ttGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGa                              <  1:48228/140‑1 (MQ=255)

                                                                                                       ttGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGa                              <  2:2307530/140‑1 (MQ=255)

                                                                                                       ttGCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGa                              <  2:4755921/140‑1 (MQ=255)

                                                                                                         gCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGaaa                            <  2:5256109/140‑1 (MQ=255)

                                                                                                         gCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGaaa                            <  1:3629309/140‑1 (MQ=255)

                                                                                                         gCACCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGaaa                            <  2:258828/140‑1 (MQ=255)

                                                                                                         gCACCCAGAACGCGTGAATCAAACCGCGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGaaa                            <  1:4499822/140‑1 (MQ=255)

                                                                                                           aCCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAAcc                          <  2:3176077/140‑1 (MQ=255)

                                                                                                           aCCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAAcc                          <  1:1468070/140‑1 (MQ=255)

                                                                                                           aCCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAAcc                          <  1:5025788/140‑1 (MQ=255)

                                                                                                           aCCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAAcc                          <  1:3462063/140‑1 (MQ=255)

                                                                                                           aCCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAAcc                          <  1:3789067/140‑1 (MQ=255)

                                                                                                           aCCCAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAAcc                          <  2:44995/140‑1 (MQ=255)

                                                                                                            cccAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAAccc                         <  2:92057/140‑1 (MQ=255)

                                                                                                            cccAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAAccc                         <  2:682756/140‑1 (MQ=255)

                                                                                                            cccAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAAccc                         <  1:744752/140‑1 (MQ=255)

                                                                                                            cccAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAAccc                         <  1:3105502/140‑1 (MQ=255)

                                                                                                             ccAGAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGTGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCa                        <  2:4426940/140‑1 (MQ=255)

                                                                                                                gAACGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCatat                     <  2:1427402/140‑1 (MQ=255)

                                                                                                                 aaCGCGTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATg                    <  1:1216678/140‑1 (MQ=255)

                                                                                                                   cgcgTGAATCAAATCGGGGATATACCCAAGCAGTGTCAACAGAATCTTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGTGCGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATCTGTa                  <  2:4625476/140‑1 (MQ=255)

                                                                                                                   cgcgTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTa                  <  2:571279/140‑1 (MQ=255)

                                                                                                                    gcgTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTAc                 <  2:113139/140‑1 (MQ=255)

                                                                                                                     cgTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACt                <  1:1704929/140‑1 (MQ=255)

                                                                                                                      gTGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTc               >  2:1088722/1‑140 (MQ=255)

                                                                                                                       tGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTcc              <  2:2262526/140‑1 (MQ=255)

                                                                                                                       tGAATCAAACCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTcc              <  1:3319990/140‑1 (MQ=255)

                                                                                                                             aaaCCGGGGATATACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATaa        <  1:2931520/140‑1 (MQ=255)

AGACCCATAGCTACCTCATTCGTTAACGGAAACACTCAGAAAGTGTAGCAGAGGAACGCGGCGCGTTAACGCCGCGGGGATGAGCACAGGTTTAATCGCGGGTTTGCACCCAGAACGCGTGAATCAAACCGGGGATACACCCAAGCAGTGTCAACAGAATATTAATAATGAACGCCCAACCGAACCCTTTACCGAGCAGCACGCCGAGCGGCGGCAGAATGATGGTGATGACGATTCTCCAGAAACCCATATGTACTCCCTATAAGAAAAT  >  NZ_CP025268/2800800‑2801070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`