| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP025268 | 3,864,419 | T→C | pseudogene (1103/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP025268 | 3,864,419 | 0 | T | C | 99.7% | 1090.6 / NA | 331 | pseudogene (1103/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (165/164); total (167/164) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 331 total aligned reads displayed.
TGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCC‑G‑CC‑AT‑‑‑GTT‑‑‑CACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGT > NZ_CP025268/3864283‑3864547 | tGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAg < 1:3313484/140‑1 (MQ=255) cacaTGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTc < 1:955859/140‑1 (MQ=255) aTGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAt < 1:1001110/140‑1 (MQ=255) tGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATc < 2:180342/140‑1 (MQ=255) gTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTCAAGCACAACCCAATGGCGGTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGCGAAAACCTAGTCACTCa > 2:5083423/1‑140 (MQ=255) ttGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAg < 1:4469366/140‑1 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑c < 2:3268904/140‑1 (MQ=255) cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑c < 2:4120946/140‑1 (MQ=255) aGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑cc > 1:2913211/1‑140 (MQ=255) gAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑ccc < 2:4119267/140‑2 (MQ=255) aaTCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGGTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGAGGTAAAACCTAGTCAATCAGACCCCC‑G‑ccca > 2:3357823/1‑138 (MQ=255) tCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑cccatg < 1:780608/140‑5 (MQ=255) aGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑Gtt < 1:3020805/140‑1 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGTGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGCACATCGGGACCCAGTTTTGCGGTAAAACCTCGTCAATCAGTCCTCC‑GCCC‑AT‑‑‑GTTgcc < 2:4218395‑M1/140‑4 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcc > 2:2357048‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcc > 1:1816072‑M1/1‑137 (MQ=255) gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAAAGGCGATTTGGGACAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCAAGTTTTGCGGTAAAACCTAGTCACTCAGACCTAC‑GACC‑AT‑‑‑GTTgcc > 2:4896033‑M1/1‑137 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgccca < 2:3832504‑M1/140‑6 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCCATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAAACTAGTCAATCAGATCTCC‑GCCC‑AT‑‑‑GTTgcccac > 2:857480‑M1/1‑134 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccac < 2:2136315‑M1/140‑7 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAGCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccac < 2:5054290‑M1/140‑7 (MQ=255) ggAAAACCACGAAGTACAGCAGGGTAAAGCACAACTCAATGGCGATTTGGGTCCGCATCATATCCGCGTGGTTGCTGAACAGCGGGATCCAGTTTTGCGGTAAATCCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccacc < 2:830512‑M1/140‑8 (MQ=255) aaaaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccac < 1:3516093‑M1/140‑10 (MQ=255) aaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacac < 1:4294784‑M1/140‑12 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacacc > 2:3583517‑M1/1‑128 (MQ=255) cACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaa > 1:3890334‑M1/1‑126 (MQ=255) cACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaa > 1:2716907‑M1/1‑126 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaag < 1:853196‑M1/140‑17 (MQ=255) cGAAGTACAGCAGAGTAAAGCACAACCCAATGGCGCTTTGGGGCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccaccccaacg < 2:474466‑M1/140‑17 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagaga > 1:5240801‑M1/1‑121 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagaga < 1:748423‑M1/140‑20 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagaga < 2:2252722‑M1/140‑20 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacgg > 2:158130‑M1/1‑111 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggt < 2:4360707‑M1/140‑31 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggt < 2:2905809‑M1/140‑31 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtc > 2:2624016‑M1/1‑109 (MQ=255) tAAAGCACAACACAATGGCGCTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAGCATCGGGATCCAGTCTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagctacactacggtc > 2:1665976‑M1/1‑109 (MQ=255) aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgac > 1:2495376‑M1/1‑106 (MQ=255) acaACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacatt < 1:2636871‑M1/140‑38 (MQ=255) aaacCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattg < 2:4524008‑M1/139‑39 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattga > 2:4720907‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattga > 2:2113368‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattga > 1:1515614‑M1/1‑101 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑CCAAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattga > 1:4072814‑M1/1‑101 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAACCCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgag < 1:1233987‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgag > 2:4048509‑M1/1‑100 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgag < 2:5358931‑M1/140‑41 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTCAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgag < 1:4878938‑M1/140‑41 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgagg > 2:3348921‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgagg > 1:3689738‑M1/1‑99 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccac > 2:2386970‑M1/1‑99 (MQ=255) aTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCTGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgc > 1:4577091‑M1/1‑95 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:3952099‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacac > 1:1698661‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTGTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:1259398‑M1/1‑94 (MQ=255) cGATTTGGGTCAGCATCTTATCCGCGTGGCTGCTGAACATCGGGATCCCGTTTTGCGGTAAAACCTACTCAAGCAGACCTCC‑GCCC‑ATTTGGCC‑‑‑CACCACACCCAAGAGATACATTACGGTCGACATTGAGTCCGCCatc < 2:3883700/140‑3 (MQ=255) cGATTTGGGTCAGCATCATCTCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:3730183‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:931919‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:5240801‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:2565752‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:1232631‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTGTTGCGGTAAAACCTCGTCAATCAGAACTCCTC‑CC‑AT‑‑‑GTTgccccccacaccaaagagatacattacggtcgacattgatgccgccagc < 2:1040166‑M1/140‑50 (MQ=255) cGACTTGTGTCAGCACCATCTCCGCGCGGTTGCTGAACATCGCGATCCAGTTTGGCGGTAAAACCCAGTCAATCAGGCCTCC‑GCCC‑AT‑‑‑GTTGCCCACCCCACCATAGAGATACATTACGGTCGACATTGAGGCCGCCAGc < 2:1414564/140‑1 (MQ=255) cGACTTGCGTCACCATCATAGCCGTGTGGTTGATTAGCAACTGGATCCAGTTTTGCGGTAAAAGCTAGTCTATCAGACCTCG‑GCCC‑AT‑‑‑GTTGACCACCACAACACTGAGATACATTAAGGTCGACATTGAGGCCGCCAGc < 2:227153/140‑1 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 2:1261772‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 2:645180‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:5014787‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:2411629‑M1/1‑89 (MQ=255) tttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacg < 1:4399674‑M1/140‑53 (MQ=255) tttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacg < 2:2804108‑M1/140‑53 (MQ=255) ggTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgt < 1:3583517‑M1/140‑57 (MQ=255) cAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgta < 2:4572526‑M1/140‑60 (MQ=255) catcatATCCGCGTGGTTGCTGACCATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑G‑CCAAT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcttgtaccg > 1:2144597‑M1/1‑78 (MQ=255) tcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 2:3943188‑M1/140‑65 (MQ=255) tcagagccgcgtggTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCGCC‑GCCC‑AG‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 2:3127082‑M1/134‑65 (MQ=255) atatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaa > 1:4001905‑M1/1‑74 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 2:77340‑M1/1‑73 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 1:584074‑M1/1‑73 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 1:5100929‑M1/1‑73 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccagaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaacgcaaacagtaa > 2:1909532‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 2:670939‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:716633‑M1/1‑68 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa > 1:1641750‑M1/1‑68 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 1:144742‑M1/1‑67 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg < 1:3184768‑M1/140‑75 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg > 2:2993690‑M1/1‑63 (MQ=255) gAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatga > 1:4675420‑M1/1‑57 (MQ=255) cATCGGGATCCAGTTTTGCGGTAAAACCGAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaagggggaaatgaaca > 2:5173232‑M1/1‑54 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg < 1:2094025‑M1/140‑89 (MQ=255) ccGGGATCCAGTTTTGCGGAAAAACCTAGTCAATCAGACCACC‑GCCC‑AT‑‑‑GTTGCCCACCACACCAAAGAAATACATTACGGTCGACACTGAGGCCGCCAGCACGGCGTGTAACGCAAACAGCAACGGTGAAATGAACAgg < 2:2497764/139‑1 (MQ=255) cGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccccaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga < 1:2029285‑M1/140‑90 (MQ=255) cGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagga < 2:5146592‑M1/140‑90 (MQ=255) cAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaa > 1:4814862‑M1/1‑44 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 1:4702114‑M1/140‑103 (MQ=255) cGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacacccaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcg > 2:3580461‑M1/1‑36 (MQ=255) cGGTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcg > 2:367545‑M1/1‑36 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:3976284‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:1834400‑M1/140‑106 (MQ=255) ggTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg < 1:1307848‑M1/140‑106 (MQ=255) gTAAAACCTAGTCAATCAGACCTCC‑GCCC‑AT‑‑‑GTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggt < 2:1120171‑M1/140‑107 (MQ=255) | TGCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCC‑G‑CC‑AT‑‑‑GTT‑‑‑CACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGT > NZ_CP025268/3864283‑3864547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |