mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 976,487 | C→A | D54E (GAC→GAA) | mukB → | chromosome partitioning protein MukB |
| RA | 1,907,264 | G→A | Q58* (CAG→TAG) | cspC ← | transcription antiterminator and regulator of mRNA stability CspC |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,721,454 | G→A | W501* (TGG→TAG) | patZ → | peptidyl‑lysine N‑acetyltransferase |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,675,415 | T→G | I210M (ATT→ATG) | yhjE → | putative transporter YhjE |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1295400 | 1298137 | 2738 | 95 [93] | [89] 96 | adhE | adhE |
| * | * | ÷ | NC_000913 | 1441804 | 1442895 | 1092 | 96 [92] | [91] 95 | ldhA | ldhA |
| * | * | ÷ | NC_000913 | 2414688 | 2416939 | 2252 | 96 [94] | [94] 97 | pta | pta |
| * | * | ÷ | NC_000913 | 3423717–3424234 | 3424561–3424238 | 5–845 | 98 [94] | [94] 95 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 4380476 | 4382363 | 1888 | 95 [92] | [94] 96 | [frdB]–frdA | [frdB],frdA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 23 (0.100) | 234 (1.120) | 128/264 | 0.1 | 90.4% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 29 (0.140) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1207805 | 24 (0.100) | 174 (0.840) | 112/264 | 0.3 | 87.4% | coding (305/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | = 1209602 | 29 (0.140) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 256 (1.130) | 143/288 | 0.1 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3709325 = | 245 (1.050) | 275 (1.220) | 141/286 | 0.1 | 57.1% | coding (1151/1692 nt) | eptB | phosphoethanolamine transferase EptB |
| ? | NC_000913 | = 4067269 | 177 (0.780) | coding (2008/2037 nt) | yihQ | sulfoquinovosidase | |||||