New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3203212 =376 (0.890)61 (0.150)
+A		 8/190 13.2 13.8% intergenic (+83/+98) cca/bacA fused CCA tRNA nucleotidyltransferase/phosphohydrolase/undecaprenyl pyrophosphate phosphatase
?NC_000913 4295852 = 396 (0.940)intergenic (+58/+584) gltP/yjcO glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 384 total aligned reads displayed.

CAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCA  >  NC_000913/3203116‑3203308
                                                                                                |                                                                                                
cAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAAAAGCGCa                                                                                                  >  1:16881971/1‑97 (MQ=255)
 aaaGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCaa                                                                                                 <  1:5021072/97‑1 (MQ=255)
 aaaGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACAAGTCAACGAAAGTTTTAGGCCTGGTAAAAAGCGGaa                                                                                                 >  1:752552/1‑97 (MQ=25)
  aaGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAg                                                                                                <  1:14806781/97‑1 (MQ=255)
   aGCCAGAATAAGTATTGGGTATTTTCCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGc                                                                                               <  1:8877761/97‑1 (MQ=25)
    gCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCg                                                                                              <  1:18485615/97‑1 (MQ=255)
     ccTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAACCGt                                                                                             >  1:19730031/1‑97 (MQ=255)
      cttaaTGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTc                                                                                            <  1:719767/94‑1 (MQ=255)
       tGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGGCTGATAAGACGCGCCAGAGTCg                                                                                           >  1:17001155/1‑97 (MQ=255)
       tGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGGAAGCGTCg                                                                                           >  1:11154041/1‑97 (MQ=255)
        gAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGcgccgc                                                                                          >  1:8162133/1‑97 (MQ=255)
        gAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTccc                                                                                          >  1:16953343/1‑95 (MQ=255)
        gAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGAAGCGCAAGCGgcgc                                                                                          >  1:2345311/1‑97 (MQ=255)
        gAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAAACGCGCAAGCGTCGc                                                                                          >  1:18719144/1‑97 (MQ=255)
        gAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCCGGTAAGACGCGCCAACGtgcg                                                                                          >  1:20049458/1‑94 (MQ=37)
        gAATGAGTATTGGGCATTTTGCCGGATGCGGCGGAAACGCCTTATGCGGCTACATGTCAACGACAGTTGTAGGGCCGATAAGACGCGGCAGCgcagc                                                                                          >  1:12207390/1‑93 (MQ=25)
          aTGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCAt                                                                                        <  1:13816237/97‑1 (MQ=255)
               tATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGc                                                                                   <  1:17325927/97‑1 (MQ=255)
               tATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGc                                                                                   >  1:4403514/1‑97 (MQ=255)
                 ttGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGt                                                                                 >  1:9366059/1‑97 (MQ=255)
                  tGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGtt                                                                                >  1:17588968/1‑97 (MQ=255)
                   gggCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTg                                                                               >  1:16280354/1‑97 (MQ=255)
                    ggCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGa                                                                              <  1:10646793/97‑1 (MQ=255)
                    ggCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGGTGa                                                                              >  1:5829287/1‑97 (MQ=255)
                      cATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGAtt                                                                            <  1:16541082/97‑1 (MQ=255)
                      cATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGAtt                                                                            >  1:11658551/1‑97 (MQ=255)
                      cATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGGCGCATCAAGCGGTGaat                                                                            >  1:10536310/1‑95 (MQ=21)
                       aTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTg                                                                           >  1:10373130/1‑97 (MQ=255)
                        ttttGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGc                                                                          >  1:11189192/1‑97 (MQ=255)
                         tttGCCGGATGCGGCGTAAACGCCTTATCCGGCTGCATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGcc                                                                         <  1:20607103/97‑1 (MQ=255)
                             ccGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGAt                                                                     <  1:10806582/97‑1 (MQ=255)
                             ccGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAACGTCGCATCAGGCGTTGATTGGCGGAt                                                                     >  1:3507705/1‑97 (MQ=255)
                              cGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATg                                                                    <  1:19113389/97‑1 (MQ=255)
                              cGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATg                                                                    >  1:19357323/1‑97 (MQ=255)
                               ggATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGGCTGGTAAGACGCGCAAGCGTGGCATCCGGCGTTGATTGCCGGGTgc                                                                   >  1:19044741/1‑97 (MQ=21)
                               ggATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCGTCAGGCGTTGATTGCCGGGTgc                                                                   >  1:3770270/1‑97 (MQ=255)
                               ggATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGGCGGATgc                                                                   >  1:7449710/1‑97 (MQ=255)
                               ggATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATgc                                                                   >  1:10091540/1‑97 (MQ=255)
                                gATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATgcg                                                                  >  1:11403594/1‑97 (MQ=255)
                                 aTGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATgcgg                                                                 <  1:5169930/97‑1 (MQ=255)
                                  tGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCCAGCGTTGATTGCCGGGTgcggc                                                                >  1:2688965/1‑97 (MQ=255)
                                  tGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATgcggc                                                                <  1:13364713/97‑1 (MQ=255)
                                     ggcgTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAAGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTg                                                             <  1:19963678/97‑1 (MQ=255)
                                      gcgTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGa                                                            <  1:6272840/97‑1 (MQ=255)
                                        gTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAAc                                                          >  1:17237942/1‑97 (MQ=255)
                                        gTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAAc                                                          <  1:1158868/97‑1 (MQ=255)
                                        gTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGGGAAc                                                          >  1:17546303/1‑97 (MQ=255)
                                        gTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGGGAAc                                                          >  1:11983827/1‑97 (MQ=255)
                                        gTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGGGAAc                                                          >  1:12347334/1‑97 (MQ=255)
                                          aaaCGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGc                                                        <  1:67444/97‑1 (MQ=255)
                                          aaaCGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGc                                                        <  1:19419966/97‑1 (MQ=255)
                                          aaaCGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGGGAAAGc                                                        >  1:5751644/1‑97 (MQ=255)
                                            aCGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGGGAAccccc                                                      >  1:17056938/1‑96 (MQ=255)
                                             cGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCtt                                                     <  1:5603621/97‑1 (MQ=255)
                                              gCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTa                                                    <  1:6224133/97‑1 (MQ=255)
                                               ccTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTAt                                                   <  1:3944894/97‑1 (MQ=255)
                                                cTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCTTTGATTGCCGGATGCGGCGGGAACGGCTTAtt                                                  >  1:5430298/1‑97 (MQ=255)
                                                 ttATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTAttn                                                 <  1:13182179/97‑2 (MQ=255)
                                                   aTCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCgg                                               >  1:7843012/1‑97 (MQ=255)
                                                   aTCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCCTCTTCgg                                               >  1:16712842/1‑97 (MQ=255)
                                                    cccGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGc                                              <  1:15353828/96‑1 (MQ=255)
                                                      cGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCt                                            <  1:18242550/97‑1 (MQ=255)
                                                       ggCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTa                                           <  1:18658330/97‑1 (MQ=255)
                                                       ggCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCCTATTCGGCCTa                                           >  1:6453733/1‑97 (MQ=255)
                                                        gCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTAc                                          >  1:16344249/1‑97 (MQ=255)
                                                         cTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACg                                         >  1:5954610/1‑97 (MQ=255)
                                                         cTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACg                                         >  1:1286418/1‑97 (MQ=255)
                                                         cTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACg                                         >  1:4798126/1‑97 (MQ=255)
                                                            cATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCaa                                      >  1:9074643/1‑97 (MQ=255)
                                                             aTGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAAt                                     <  1:14037252/97‑1 (MQ=255)
                                                              tGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATc                                    >  1:8332174/1‑97 (MQ=255)
                                                              tGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATc                                    <  1:15523791/97‑1 (MQ=255)
                                                                tCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGt                                  >  1:3340625/1‑97 (MQ=255)
                                                                 cAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCggt                                 >  1:11932024/1‑95 (MQ=255)
                                                                 cAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGtt                                 <  1:841234/97‑1 (MQ=255)
                                                                  aaCGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTg                                <  1:20423704/97‑1 (MQ=255)
                                                                    cGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCCATCGTTGAc                              >  1:15111997/1‑97 (MQ=255)
                                                                     gACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACa                             >  1:15204600/1‑97 (MQ=255)
                                                                      aCAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACaa                            >  1:4694087/1‑97 (MQ=255)
                                                                      aCAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACaa                            >  1:6923367/1‑97 (MQ=255)
                                                                       cAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAAc                           <  1:20820962/97‑1 (MQ=255)
                                                                        aGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACg                          >  1:9934734/1‑97 (MQ=255)
                                                                        aGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACg                          <  1:15720358/97‑1 (MQ=255)
                                                                        aGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACg                          >  1:7099764/1‑97 (MQ=255)
                                                                           tGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCa                       >  1:17929893/1‑97 (MQ=255)
                                                                           tGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCa                       >  1:2828198/1‑97 (MQ=255)
                                                                            gTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGACaa                      >  1:14396010/1‑97 (MQ=255)
                                                                             tAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAg                     <  1:5280153/97‑1 (MQ=255)
                                                                             tAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAg                     >  1:4145960/1‑97 (MQ=255)
                                                                              aGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGc                    <  1:20342215/97‑1 (MQ=255)
                                                                                  cTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATcc                >  1:9600069/1‑97 (MQ=255)
                                                                                   tGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCg               <  1:6162090/97‑1 (MQ=255)
                                                                                    gATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCgg              >  1:18382117/1‑96 (MQ=255)
                                                                                          ccgcgCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTAt        <  1:10052299/96‑1 (MQ=255)
                                                                                          aCGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTAt        <  1:15990896/97‑1 (MQ=255)
                                                                                            gcgcAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTc      >  1:13672528/1‑97 (MQ=255)
                                                                                            gcgcAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTc      <  1:12596464/97‑1 (MQ=255)
                                                                                              gcAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCt    >  1:11824620/1‑97 (MQ=255)
                                                                                              gcAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCt    >  1:13288109/1‑97 (MQ=255)
                                                                                               cAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTc   <  1:5551395/97‑1 (MQ=255)
                                                                                                |                                                                                                
CAAAGCCTGAATGAGTATTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCGGATGCGGCGTGAACGCCTTATTCGGCCTACGCAATCGTTGACAACGCCAAGCATCCGACACTATTCCTCA  >  NC_000913/3203116‑3203308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.