Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,632,5230AC41.3% 760.3 / 246.8 492intergenic (‑238/‑367)ydfJ/ynfTputative transporter YdfJ/protein YnfT
Reads supporting (aligned to +/- strand):  ref base A (237/52);  new base C (0/203);  total (237/255)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 564 total aligned reads displayed.

AAAAACTCCCCAACAGATAAGTAGTTTTTTCATGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCACATTCATTCCTCCGCATCAAA  >  NC_000913/1632427‑1632619
                                                                                                |                                                                                                
 aaaaCTCCCCAACAGATAAGTAGTTTTTTCATGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTAc                                                                                                 <  1:19542798/97‑1 (MQ=255)
   aaCTCCCCAACAGATAAGTAGTTTTTTCATGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTAACa                                                                                               >  1:16631192/1‑97 (MQ=255)
    aCTCCCCAACAGATAAGTAGTTTTTTCATGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAg                                                                                              <  1:7721566/97‑1 (MQ=255)
        cccAACAGATAAGTAGTTTTTTCATGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCaa                                                                                          >  1:6397363/1‑97 (MQ=255)
         ccAACAGATAAGTAGTTTTTTCATGGATTTATGCGTAAAATCAAGAACGGCTGGAAAACATTCAATACTCACACTATCGAAAAAATTAACAACCaaa                                                                                         >  1:13923737/1‑96 (MQ=37)
          cAACAGATAAGTAGTTTTTTCATGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATc                                                                                        >  1:15155974/1‑97 (MQ=255)
           aaCAGATAAGTAGTTTTTTCATGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCg                                                                                       >  1:10348271/1‑97 (MQ=255)
               gATAAGTAGTTTTTTCATGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCCGCCAATCgcagc                                                                                   >  1:11711731/1‑97 (MQ=255)
                aTAAGTAGTTTTTTCATGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCgcagca                                                                                  >  1:4679354/1‑97 (MQ=255)
                 tAAGTAGTTTTTTCATGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTTCCCGCCAATCgcagcaa                                                                                 >  1:14998742/1‑96 (MQ=255)
                      agtTTTTTCATGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTCCCAGCCAATCGCAGCACGTTCt                                                                            <  1:20263166/97‑1 (MQ=255)
                      agtTTTTTCATGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCt                                                                            >  1:3224108/1‑97 (MQ=255)
                      agtTTTTTAATGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTCCCAGCCAATCGCAGCACGTTCt                                                                            <  1:2989090/97‑1 (MQ=255)
                       gtTTTTTCATGGATTTATGCGTAAAATCAAGAAGGGCTGAAAATCATTCAATACTCACACTATCAAAAAATTTCCCAGCCAATCGCAGCACGTTCtt                                                                           <  1:18257584/97‑1 (MQ=37)
                         tttttCATGGATTTATGCGTAAAATCAAGAACGGCTGAAAATCATTCAATACTCACACTATCGAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGc                                                                         <  1:10926119/97‑1 (MQ=255)
                         tttttCATGAATTTATGCGTAAAATCAAGAACGGCTGAAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGc                                                                         <  1:13523138/97‑1 (MQ=255)
                             tCATGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATaa                                                                     >  1:18655320/1‑97 (MQ=255)
                              cATGGATTTATGCTAAAAATCAAGAACGGCTGAAAATCATTCAATACTCACACTATCGAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAg                                                                    <  1:16762170/97‑1 (MQ=37)
                              cATGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAg                                                                    <  1:15672681/97‑1 (MQ=255)
                               aTGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAgg                                                                   <  1:20795688/97‑1 (MQ=255)
                               aTGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGGTCTTGCATAAgg                                                                   >  1:5843623/1‑97 (MQ=255)
                                tGGTTTTATGCTAAAAATCAAGAACGGCTGAAAATCATTAAATCCTCACACTATCAAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGgt                                                                  <  1:11165716/97‑1 (MQ=255)
                                tGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGgt                                                                  >  1:2620045/1‑97 (MQ=255)
                                tGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGgt                                                                  >  1:18532014/1‑97 (MQ=255)
                                tGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGgt                                                                  >  1:9748653/1‑97 (MQ=255)
                                 ggATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGgtg                                                                 >  1:11257779/1‑97 (MQ=255)
                                 ggATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGgtg                                                                 >  1:14037781/1‑97 (MQ=255)
                                  gATTTATGGGAAAAATCAAGAACGGCGGGAAATCATTTAATCCTCACACAATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGgtgt                                                                <  1:13058812/97‑1 (MQ=255)
                                  gATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCCATCGCAGCACGTTCTTGCATAAGgtgt                                                                >  1:19415963/1‑97 (MQ=255)
                                  gATTTATGCGTAAAATCAAGAACGGCTGGAAATAATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGgggt                                                                >  1:2517890/1‑97 (MQ=255)
                                  gATTTATGCGTAAAATAAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGgtgt                                                                <  1:8309304/97‑1 (MQ=255)
                                   aTTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGgtgtg                                                               <  1:4990132/97‑1 (MQ=255)
                                   aTTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGgtgtg                                                               >  1:12422981/1‑97 (MQ=255)
                                     ttATGCTTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTc                                                             <  1:12626580/97‑1 (MQ=255)
                                      tATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCt                                                            >  1:20568543/1‑97 (MQ=255)
                                      tATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCAAGTTCTTGCATAAGGTGTGTCt                                                            >  1:8587053/1‑97 (MQ=255)
                                         gCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGGAAAATTTACCAGCCCATCGCAGCACGCTCTTGCCTAAGGTGTGTCTggg                                                         >  1:5697395/1‑95 (MQ=37)
                                           gTAAAATCAAGACCGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGt                                                       <  1:15886771/97‑1 (MQ=255)
                                             aaaaTCAAGAACGGCTGAAAATCATTCAATCCTCACACTATCGAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGttt                                                     <  1:12170236/97‑1 (MQ=255)
                                              aaaTCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGtttt                                                    >  1:15489075/1‑97 (MQ=255)
                                              aaaTAAAGAACGGCTGGAAATCATTCAATCCTCCCACTATCAAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGtttt                                                    <  1:5336971/97‑1 (MQ=37)
                                               aaTCAAGACCGGGTGAAAATCATTCAATACTCACACTATCAAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGttttt                                                   <  1:3582538/97‑1 (MQ=37)
                                                 tCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCa                                                 >  1:10437892/1‑97 (MQ=255)
                                                 tCAAGAACGGCGGGAAATCATTCAATACTCACACTATCAAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCa                                                 <  1:19863402/97‑1 (MQ=255)
                                                  cAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGGTTTTTaa                                                >  1:19997975/1‑97 (MQ=255)
                                                  cAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGGTTTTTaa                                                >  1:6092299/1‑97 (MQ=255)
                                                  aaaGAACGGTTGGAAATCATTAAATCCTCACACTATCGAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCaa                                                <  1:4480892/96‑1 (MQ=37)
                                                   aaGAACGGCTGGAATTCATTCAATACTCACACTATCGAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAAc                                               <  1:17106774/97‑1 (MQ=255)
                                                    aGAACGGCTGAAAATCATTCAATACTCACACTATCAAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACt                                              <  1:4147894/97‑1 (MQ=255)
                                                     gAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAAATa                                             >  1:14500278/1‑97 (MQ=255)
                                                       aCGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGGGTGTCTGCGGTTTTTTAACTAtt                                           >  1:7314109/1‑97 (MQ=255)
                                                        cGGCTGAAAATCATTCAATACTCACACTATCGAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTc                                          <  1:20988759/97‑1 (MQ=255)
                                                         ggCTGGAAATCATTCAATACTCACACTATCGAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCa                                         <  1:9396507/97‑1 (MQ=255)
                                                         ggCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCa                                         >  1:12877171/1‑97 (MQ=255)
                                                         ggCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCa                                         >  1:5221296/1‑97 (MQ=255)
                                                           cTGGAAATCATTCAATCCTCACACTATCGAAAATTTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGa                                       <  1:716421/97‑1 (MQ=255)
                                                            tgaaaaTCATTAAATCCTCACACTATCAAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGAt                                      <  1:15360786/94‑1 (MQ=37)
                                                            tGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGCGTCTGCGGTTTTTCAACTATTCAGAt                                      >  1:19066905/1‑97 (MQ=255)
                                                             gaaaaTCATTCAATACTCACACTATCAAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATa                                     <  1:10091690/95‑1 (MQ=255)
                                                              gAACTCATTAAATACTCACACTATCAAAAATTATCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATAc                                    <  1:21229/97‑1 (MQ=25)
                                                              gAAATCATTAAATACTCACACTATCAAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATAc                                    <  1:16197198/97‑1 (MQ=255)
                                                              aaaaTCATTCAATACTCACACTATCAAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATAc                                    <  1:16456884/96‑1 (MQ=255)
                                                              aaaaTCATTCAATACCCACACTATCGAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATAc                                    <  1:3424002/96‑1 (MQ=255)
                                                               aaaTCATTCAATCCTCACACTAGCAAAAATTTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACa                                   <  1:10670318/97‑1 (MQ=25)
                                                                aaTCATTCAATTCTCACACTATAGAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACAt                                  <  1:19694037/97‑1 (MQ=255)
                                                                aaTCATTAAATACTCACACTATCGAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACAt                                  <  1:19183145/97‑1 (MQ=255)
                                                                 ataaTTAAATACTCACACTATCAAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATc                                 <  1:12027876/94‑1 (MQ=37)
                                                                 aTCATTCAACACCCACACTATAAAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATc                                 <  1:20869395/97‑1 (MQ=25)
                                                                 aTCATTAAATACTCACACTATCGAAAATTTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATc                                 <  1:17701722/97‑1 (MQ=255)
                                                                   cATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCAc                               >  1:8433437/1‑97 (MQ=255)
                                                                    aTTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACt                              >  1:10169028/1‑97 (MQ=255)
                                                                     ttaaaTCCTCACACTATCAAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTc                             <  1:16919381/94‑1 (MQ=25)
                                                                     ttCAATCCTCACACTATCAAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTc                             <  1:3780290/97‑1 (MQ=255)
                                                                      tCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTcc                            >  1:9512860/1‑97 (MQ=255)
                                                                        aaTACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCa                          >  1:14263883/1‑97 (MQ=255)
                                                                         atccTCACACTATCAAAAAATTCCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCAt                         <  1:6618325/94‑1 (MQ=21)
                                                                         aTACTCACACTATCAAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCAt                         <  1:20383634/97‑1 (MQ=255)
                                                                           aCTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATca                       >  1:751946/1‑97 (MQ=255)
                                                                             tCACACTATCGAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCGATcaca                     <  1:18085717/97‑1 (MQ=255)
                                                                             tCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATcaca                     >  1:8760935/1‑97 (MQ=255)
                                                                             tCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATcaca                     >  1:1803040/1‑97 (MQ=255)
                                                                              cccacTAGCAAAAATTTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCCCTCCCATCAcat                    <  1:4319660/95‑1 (MQ=18)
                                                                               acccTATCAAAAAATTCCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCAcatt                   <  1:18954282/94‑1 (MQ=18)
                                                                                cacTATCAAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCAcattc                  <  1:5106009/97‑1 (MQ=255)
                                                                                cacTATCAAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCAcattc                  <  1:8106904/97‑1 (MQ=255)
                                                                                 atgaTCGAAATCTTCCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCTGTTTTTCAACTATTCAGATACATCTCTCCCATCAcattca                 <  1:10860098/94‑1 (MQ=17)
                                                                                 ataaTCAAAAAATTCCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCAcattca                 <  1:17400807/94‑1 (MQ=18)
                                                                                  cTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCAcattcat                >  1:15263692/1‑97 (MQ=255)
                                                                                  cTATCAAAAATTTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCAcattcat                <  1:9055203/97‑1 (MQ=255)
                                                                                   tATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCAcattcatt               >  1:13328119/1‑97 (MQ=255)
                                                                                      cGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCACATTCATtcct            >  1:6949789/1‑97 (MQ=255)
                                                                                       gAAAAATTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCACATTCATtcctc           <  1:10000768/97‑1 (MQ=255)
                                                                                       aaaaaaTTCCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCACATTCATtcctc           <  1:17794235/96‑1 (MQ=255)
                                                                                         aaaaTTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCACATTCATTCCTCCg         >  1:16070468/1‑97 (MQ=255)
                                                                                           aaTTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCACATTCATTCCTCCGCa       >  1:11497478/1‑97 (MQ=255)
                                                                                            aTTTCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCACATTCATTCCTCCGCAt      <  1:3363556/97‑1 (MQ=255)
                                                                                            aTTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCACATTCATTCCTCCGCAt      >  1:5467635/1‑97 (MQ=255)
                                                                                            aTTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCACATTCATTCCTCCGCAt      >  1:2303279/1‑97 (MQ=255)
                                                                                             tttCCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCACATTCATTCCTCCGCATc     <  1:4871429/97‑1 (MQ=255)
                                                                                                aCCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCACATTCATTCCTCCGCATCaaa  >  1:7954011/1‑97 (MQ=255)
                                                                                                |                                                                                                
AAAAACTCCCCAACAGATAAGTAGTTTTTTCATGGATTTATGCGTAAAATCAAGAACGGCTGGAAATCATTCAATACTCACACTATCGAAAAATTTACCAGCCAATCGCAGCACGTTCTTGCATAAGGTGTGTCTGCGGTTTTTCAACTATTCAGATACATCACTCCCATCACATTCATTCCTCCGCATCAAA  >  NC_000913/1632427‑1632619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑