Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,001,9180AC33.1% 727.5 / 142.4 311noncoding (189/195 nt)fliXsmall RNA FliX
Reads supporting (aligned to +/- strand):  ref base A (173/35);  new base C (0/103);  total (173/138)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 368 total aligned reads displayed.

CATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAA  >  NC_000913/2001822‑2002014
                                                                                                 |                                                                                                 
cATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGaaaaaaa                                                                                                   >  1:11730333/1‑97 (MQ=255)
cATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGaaaaaaa                                                                                                   <  1:5289118/97‑1 (MQ=255)
  tGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑cc                                                                                                >  1:4074810/1‑97 (MQ=255)
   gATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAACA‑ccc                                                                                               >  1:10045228/1‑97 (MQ=255)
   gATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑ccc                                                                                               <  1:10097599/97‑1 (MQ=255)
   gATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑ccc                                                                                               >  1:18183935/1‑97 (MQ=255)
   gATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑ccc                                                                                               >  1:8425017/1‑97 (MQ=255)
   gATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑ccc                                                                                               <  1:19699340/97‑1 (MQ=255)
   gATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑ccc                                                                                               >  1:13392621/1‑97 (MQ=255)
   gATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑ccc                                                                                               <  1:13981005/97‑1 (MQ=255)
    aTTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑cccc                                                                                              >  1:19081207/1‑97 (MQ=255)
    aTTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑cccc                                                                                              <  1:12458411/97‑1 (MQ=255)
    aTTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑cccc                                                                                              >  1:4421051/1‑97 (MQ=255)
      tATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCccgc                                                                                            >  1:5729100/1‑97 (MQ=255)
      tATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCccgc                                                                                            >  1:11423065/1‑97 (MQ=255)
        tCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCccgccg                                                                                          <  1:20941150/97‑1 (MQ=255)
         ccGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCgg                                                                                         <  1:14783285/97‑1 (MQ=255)
           gTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTg                                                                                       >  1:18028941/1‑97 (MQ=255)
             ttCTGCGGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGc                                                                                     <  1:10383078/97‑1 (MQ=255)
             ttCTGCAGGTTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGTTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGc                                                                                     <  1:4777228/97‑1 (MQ=255)
               cTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCgg                                                                                   >  1:11311204/1‑97 (MQ=255)
                    gggTTTTTAATGGGACGATTAGTGGGTGAAATGAGGGGTTATTGGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAg                                                                              <  1:18443644/97‑1 (MQ=255)
                         tttAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGGAGCACGt                                                                         >  1:6301849/1‑97 (MQ=255)
                           tAATCGGACGATTAGGGGGTGAAAGGAGGGGTTATTGGGGGG‑TTACGGGAAAATCCCAGGCAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTg                                                                       <  1:17391660/97‑1 (MQ=255)
                            aaTCGGACGATTAGGGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGc                                                                      <  1:12898195/97‑1 (MQ=255)
                             aTCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCt                                                                     >  1:16149133/1‑97 (MQ=255)
                              tCGGACGATTAGTGGGTGAAATGAGTGTTTATTTGGGGT‑TTACAGTTAAATTCCAGGCAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTg                                                                    <  1:7126662/97‑1 (MQ=255)
                                ggACGATTGGTGGGTGAAATGAGGGGTTATGGGGGGG‑TTACAGGTAAATTCGAGGAAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGAc                                                                  <  1:7824416/97‑1 (MQ=255)
                                 gagaaTTAGTGGGTGAAAGGAGGGGTTATTTGGGGT‑TTAAAGGAAAATCCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACa                                                                 <  1:11994443/93‑1 (MQ=255)
                                  aCGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaa                                                                >  1:3425813/1‑97 (MQ=255)
                                    gATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAAt                                                              >  1:18381672/1‑97 (MQ=255)
                                       tAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTgc                                                           >  1:15586080/1‑97 (MQ=255)
                                       tAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTgc                                                           >  1:636332/1‑97 (MQ=255)
                                        aGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTgcg                                                          >  1:16951835/1‑97 (MQ=255)
                                          tGGGTGAAATGAGGGGTTATTTGGGGT‑TTACAGTTAAATCCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCt                                                        <  1:17325103/97‑1 (MQ=255)
                                           gggTGAAATGGGGGGTTTTTGGGGGG‑TTACAGGTAAATTCCAGGAAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCtt                                                       <  1:6734739/97‑1 (MQ=255)
                                            ggTGAAAGGAGGGGTTATTGGGGGT‑TTACAGGTAAATTCCAGGAAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCttt                                                      <  1:18954097/97‑1 (MQ=255)
                                             gTGAAATGGGGGTTTATTTGGGGG‑TTACAGGTAAATCCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTa                                                     <  1:2182398/97‑1 (MQ=255)
                                              tGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGGTGCAGACAAATTGCGCTTTAt                                                    >  1:3922971/1‑97 (MQ=255)
                                                aaaTGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGt                                                  >  1:7511233/1‑97 (MQ=255)
                                                aaaTGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGt                                                  >  1:561829/1‑97 (MQ=255)
                                                aaaTGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGt                                                  >  1:19528511/1‑97 (MQ=255)
                                                aaaGGAGGGTTTATTTGGGGT‑TTACAGGTAAATTCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGt                                                  <  1:15280333/97‑1 (MQ=255)
                                                 aaTGAGGGTTTTTTGGGGGG‑TTACAGGTAAATCCCAGGCAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGtt                                                 <  1:18739694/97‑1 (MQ=255)
                                                  aTGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTg                                                >  1:16663691/1‑97 (MQ=255)
                                                  aTGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTg                                                >  1:268342/1‑97 (MQ=255)
                                                  aTGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTg                                                >  1:808111/1‑97 (MQ=255)
                                                    tgggggTTTTTTGGGGG‑TTTAAGGGAAATTCCCGGCAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGc                                               <  1:17582982/95‑1 (MQ=255)
                                                    ggggggTTTTTGGGGGG‑TAACGGATAAATCCAAGGAAAAAAAACC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGcc                                              <  1:1366004/95‑1 (MQ=255)
                                                    gAGGGTTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGcc                                              <  1:13467326/97‑1 (MQ=255)
                                                    gAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAGGCACGTTGCTGACAAATTGCGCTTTATGTTGcg                                              >  1:16526076/1‑96 (MQ=255)
                                                    gAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGcc                                              >  1:590262/1‑97 (MQ=255)
                                                    gAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGcc                                              >  1:11078754/1‑97 (MQ=255)
                                                    gAGGGGTTATTTGGGGG‑TTACAGGTAAATCCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGcc                                              <  1:8757695/97‑1 (MQ=255)
                                                     gggggTTTTTTGGGGGTTTACAGGAAAATTCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGcc                                              <  1:3318410/96‑1 (MQ=255)
                                                     aGGGTTTATTGGGGGG‑TTACAGGTAAATCCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCg                                             <  1:14099335/97‑1 (MQ=255)
                                                     aGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCg                                             >  1:4522504/1‑97 (MQ=255)
                                                     aGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCg                                             >  1:368087/1‑97 (MQ=255)
                                                         tttttttGGGGT‑TTACAGGAAAATTCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATg                                         <  1:15163167/93‑1 (MQ=255)
                                                          ttATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgc                                        >  1:6246474/1‑97 (MQ=255)
                                                           tATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcg                                       <  1:14045946/97‑1 (MQ=255)
                                                           tATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGTAGCCCCGTGTTGACAAATTTCCCCTTATGTTGCCGGGTgcg                                       >  1:9188516/1‑97 (MQ=255)
                                                           tATTGGGGGG‑TTACAGTAAAATCCCAGAAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcg                                       <  1:6023491/97‑1 (MQ=255)
                                                            aTTGGGGGC‑TTACAGAAAAATCCCAGGAAAAAAACAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcgg                                      <  1:8255507/97‑1 (MQ=255)
                                                              ttGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcggcg                                    >  1:17829846/1‑97 (MQ=255)
                                                               tGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGt                                   >  1:15712212/1‑97 (MQ=255)
                                                               gggggg‑TTACAGTTAAATCCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGt                                   <  1:3799710/96‑1 (MQ=255)
                                                                   tg‑TTACAGTAAAATTCCAGGGAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAAc                               <  1:20669564/96‑1 (MQ=39)
                                                                   gg‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAAc                               >  1:2748254/1‑97 (MQ=255)
                                                                   gg‑TAACAGGAAAATCCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAAc                               <  1:9458717/97‑1 (MQ=38)
                                                                      ttACAGATAAATTCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGc                             <  1:8212726/97‑1 (MQ=255)
                                                                       tACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGcc                            >  1:15884370/1‑97 (MQ=255)
                                                                       tACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAAAGcc                            >  1:10916180/1‑97 (MQ=255)
                                                                          aGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGGGTAAACGCCTTa                         >  1:10778346/1‑97 (MQ=255)
                                                                           ggTAAGTTCCAGGGAAAAAAACC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTAt                        <  1:19243071/97‑1 (MQ=37)
                                                                           ggTAAATTCGAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTAt                        <  1:1933661/97‑1 (MQ=38)
                                                                            ggaaaaTCCAGGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTAt                        <  1:2372561/95‑1 (MQ=37)
                                                                            gTAAATTCCAGGCAGAAAAACC‑CCCCGCCGGCGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATc                       <  1:20127438/97‑1 (MQ=255)
                                                                              aaaTTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCg                     >  1:2880376/1‑97 (MQ=255)
                                                                              aaaTCCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCg                     <  1:4871706/97‑1 (MQ=38)
                                                                              aaaTCCCAGCCAGAAAAACC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCg                     <  1:13709874/97‑1 (MQ=37)
                                                                              aaaTACCAGCAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCg                     <  1:4639311/97‑1 (MQ=37)
                                                                               aaTTCCAGGCAAAAAAACC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCgg                    <  1:2614517/97‑1 (MQ=255)
                                                                                 tcccAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGcc                  <  1:1306875/95‑1 (MQ=37)
                                                                                   ccAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTa                >  1:15370698/1‑97 (MQ=255)
                                                                                   ccAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTa                >  1:5501601/1‑97 (MQ=255)
                                                                                    cAGCCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAc               <  1:14569716/97‑1 (MQ=255)
                                                                                     aGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACa              >  1:13292612/1‑97 (MQ=255)
                                                                                     aGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACa              >  1:19877190/1‑97 (MQ=255)
                                                                                     aGGCAAAAAAACC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACa              <  1:9688625/97‑1 (MQ=255)
                                                                                      ggCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaa             >  1:7563637/1‑97 (MQ=255)
                                                                                      ggCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaa             <  1:5121610/97‑1 (MQ=255)
                                                                                       gaaaaaaacac‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaa            <  1:12597086/93‑1 (MQ=25)
                                                                                         aaaaaaaac‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaaaa          <  1:9017772/95‑1 (MQ=255)
                                                                                         aGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaaaa          >  1:9134316/1‑97 (MQ=255)
                                                                                          aaaaaaac‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAt         <  1:12278162/96‑1 (MQ=255)
                                                                                              aaac‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGc     <  1:7321873/97‑1 (MQ=255)
                                                                                              aaac‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGc     <  1:14366042/97‑1 (MQ=255)
                                                                                              aaaa‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGc     >  1:9788935/1‑97 (MQ=255)
                                                                                                aa‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCaa   >  1:14865144/1‑97 (MQ=255)
                                                                                                 |                                                                                                 
CATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAA  >  NC_000913/2001822‑2002014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑