| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,201,775 | (T)8→7 | intergenic (+113/+2) | llmg_1230 → / ← tnp1077 | hypothetical protein predicted by Glimmer/Critica/pseudogene |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,201,768 | 0 | T | . | 95.2% | 2160.4 / 107.2 | 543 | intergenic (+106/+9) | llmg_1230/tnp1077 | hypothetical protein predicted by Glimmer/Critica/pseudogene |
| Reads supporting (aligned to +/- strand): ref base T (26/0); new base . (276/239); total (303/240) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.69e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 636 total aligned reads displayed.
ATTAGAAGAAAAAGAAGCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTCTTTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTTGTAATAGTGAATCCAT > AM406671/1201620‑1201864 | aTTAGAAGAAAAAGAAGCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTCt < 1:7407082/149‑1 (MQ=255) tAGAAGAAAAAGAAGCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTCttt > 1:10436485/1‑149 (MQ=255) tAGAAGAAAAAGAAGCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTCttt < 1:9941157/149‑1 (MQ=255) tAGAAGAAAAAGAAGCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTCttt > 2:2983663/1‑149 (MQ=255) tAGAAGAAAAAGAAGCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTCttt > 1:2990312/1‑149 (MQ=255) aagaaAAAGAAGCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTCtttttt < 1:8003946/149‑1 (MQ=255) aagaaAAAGAAGCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTCTCtttttt > 1:6027935/1‑149 (MQ=255) agaaAAAGAAGCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTCttttttt > 1:7588130/1‑149 (MQ=255) aaaaGAAGCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTCtttttttgtt < 1:10017574/149‑4 (MQ=255) aaaaGAAGCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTCtttttttgtt > 2:7959282/1‑146 (MQ=255) aaaaGAAGCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTCtttttttgtt < 1:8391763/149‑4 (MQ=255) aaaaGAAGCGTTTGATTATATAAAAAATAATTAAACATATTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTCtttttttgtt < 2:7373807/149‑4 (MQ=255) aagaagCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTCGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTAt < 1:5381204/149‑1 (MQ=255) aagaagCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGAGTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTAt > 1:6435695/1‑149 (MQ=255) aagaagCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTAt > 1:3668845/1‑149 (MQ=255) aagaagCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTAt < 1:1591174/149‑1 (MQ=255) aagaagCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAAACTTTTTAGACAAGAATAATTTCTTGTCttttttttttgt > 2:2520515/1‑145 (MQ=255) agaagCGTTTGATTATATAAAAAATAATTAAACCTTTTTAGATTATTGTATTTATTATAGTACGAAATTAAAAAAAGTAGAATTTTTTATTTCAAACCCTAAAGCAAGAATCTTTAGACAAGACTTATTTCTTGttttttttatttatt > 2:6069387/1‑142 (MQ=255) gaagCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTTTTTTTTTTTTCAAAAGCTAGACTTTTTATACAAGAATATTTTCTTGTC‑TTTTTTTGTTAttt > 2:9164608/1‑149 (MQ=255) gaagCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTAttt < 1:1414202/149‑1 (MQ=255) gaagCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTAttt > 1:2081042/1‑149 (MQ=255) gCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGa < 1:3999170/149‑1 (MQ=255) cGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGaa < 1:9474477/149‑1 (MQ=255) tttGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATa > 2:6875452/1‑149 (MQ=255) ttGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATaa < 1:7832325/149‑1 (MQ=255) tGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATaaa > 2:8752104/1‑148 (MQ=255) tGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAg < 1:8790959/149‑1 (MQ=255) gATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGagtcatt > 2:1637275/1‑143 (MQ=255) gATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGt > 1:8704038/1‑149 (MQ=255) tatataAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTaa < 1:686583/149‑1 (MQ=255) atataAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAAAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTaaa < 2:6690770/149‑1 (MQ=255) aaaaaaTAATTAAACATTTTTTTATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGTTGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTTAATAAGTTAAACGat > 2:6435351/1‑149 (MQ=25) aaaaaaTAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAGGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGat < 2:3045639/149‑1 (MQ=255) aaaaaaTAATTAAACATTTTTAGATTATTGTATATAATATAGTAAGACATTAAAAAAAGTAGCATTATTGATGTGAACCACAAAAGCTAGACCTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGATATTTTGACTAAGTTaaatgct > 2:4263371/1‑145 (MQ=21) aaaaaTAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGata < 2:2017782/149‑1 (MQ=255) aaaaaTAAGTAAACATTTTTAGATTATTGTATTCAAAATAGTAAGAAATTAAAAATGGTTGTCTTTTTGATTTGAACCACATTAGTGAAACTGTTTAGACAAGAATATTATCTACT‑TCATTTTTGTCATTTTGTAAAAGTTAGACggtt > 2:7169651/1‑146 (MQ=255) aaaTAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATatt > 2:7469199/1‑149 (MQ=255) aaaTAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATatt < 2:6308078/149‑1 (MQ=255) aaaTAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATGTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATatt < 2:3733186/149‑1 (MQ=255) aataatTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATTTTTACTCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTCTTTTTTTT‑TTATTTTGAATAAGTTATACTATattt > 2:4488557/1‑148 (MQ=25) ataatTAAACATTTTTAGATTATTGTATTTATTATAGTAAGGAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTACACGATattgg > 1:1818181/1‑149 (MQ=255) taatTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATattgga < 1:7143653/149‑1 (MQ=255) aatTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATattggat > 2:8843159/1‑149 (MQ=255) aatTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATattggat < 2:8284908/149‑1 (MQ=255) ttAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATattggattg < 1:2377845/149‑1 (MQ=255) ttAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATattggattg < 1:9221583/149‑1 (MQ=255) tAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATattggattgg < 2:3997096/149‑1 (MQ=255) tAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATattggattgg < 2:10367495/149‑1 (MQ=255) tAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATattggattgg < 2:2805128/149‑1 (MQ=255) aCATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTTTTTTTTTTTCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGTATTGGACt > 2:1494590/1‑149 (MQ=18) cATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTc < 2:8505272/149‑1 (MQ=255) tttttAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTTGATTGGACTCAt > 2:5569314/1‑149 (MQ=255) tttttAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCAt < 2:5304644/149‑1 (MQ=255) ttttAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATc < 2:4909477/149‑1 (MQ=255) ttttAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATc < 1:5872072/149‑1 (MQ=255) tttAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATcc < 1:4654780/149‑1 (MQ=255) tttAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATcc < 2:3212086/149‑1 (MQ=255) aGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGt > 1:9771453/1‑149 (MQ=255) gATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGtt > 1:4280572/1‑149 (MQ=255) ttGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAAtt > 1:6193152/1‑149 (MQ=255) atttattATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAAtttttt < 1:1229946/149‑1 (MQ=255) tttattATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTc < 1:5564779/149‑1 (MQ=255) ttattaTAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCt < 1:4176556/149‑1 (MQ=255) ttattaTAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCt > 1:4856382/1‑149 (MQ=255) attatAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTTTTTTTAATAAGTTAAACGATATTGGTTTTGTCTCTTCCAGTTCCATTTTTTCttt > 2:4771412/1‑148 (MQ=17) attatAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTa > 1:2637261/1‑149 (MQ=255) attatAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTCGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTTAATTTTTTCttt > 2:9823692/1‑148 (MQ=255) tataGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAATCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAAt > 1:5742152/1‑149 (MQ=255) tataGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTTTTTAt > 2:10096131/1‑149 (MQ=255) tataGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAAt > 1:2782530/1‑149 (MQ=255) ataGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGTACTCATCTAGTTCAATTTTTTCTTAAtt > 2:3317039/1‑149 (MQ=255) aGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAAttcg > 1:9559795/1‑149 (MQ=255) aGTAAGAAATTAAAAAAAGTAGCATTGTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAAttcg < 1:3765968/149‑1 (MQ=255) gcaaGAAAGTAAAAAAAGTATCATTTTTGATGTAAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTTTTGTC‑TTTTTTTGTTATTTTGAATAAGTGAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAAttcgt < 2:7777028/147‑1 (MQ=14) tAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAAttcgtt < 1:3437370/149‑1 (MQ=255) aaaGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAAttcgtt < 2:8575842/148‑1 (MQ=255) aaaaCTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTACACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAAttcgtttcg < 1:8596241/148‑1 (MQ=255) aaaTTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGAATTTTTAGACAAGAATAATTTCTTGT‑TTTTTTTTGTTATTTTGAATATGTTAAACGATATTGTATTGGACTCATCCAGTTCAATTTTTTTTTAAtttgtctcgt > 2:1216409/1‑149 (MQ=14) ttAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGtgtt > 2:5842065/1‑149 (MQ=255) tAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGtgttg > 1:5175605/1‑149 (MQ=255) aaaaaGTAGCATTTTTGATTTGAGCCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTTGTaa < 2:4088219/149‑1 (MQ=255) aaaaaGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTTGTaa < 1:3154988/149‑1 (MQ=255) aaaaGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTTGTTTTTTTTTATTGCTTGTCTTTTTTAT‑TTTTTTTTAATAAGTTAAACGGTATTGGATTGGTCTCATCCATCTCAATTTTTACTTAATTTTTTTCGTGTTGTAAt > 2:7088740/1‑149 (MQ=9) aaaGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTTGTAATa > 1:10174206/1‑149 (MQ=255) aaGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTCTTTTTTTT‑TTTTTTTTTATAAGTTAAACGATATTATAATGGCTTAATCAAGTTCAATTATTTCTTAATTCTTTTCGTGTTGTAATaa > 2:9320487/1‑148 (MQ=11) aGTAGCATTTTTGTTTTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGTATAAGTTAAACGATATTGGATTTTTCTTATCTAGTTCAATTTTTTCTTAATTCGTTTCGTTTTGTAATAGt > 2:1374095/1‑149 (MQ=11) aGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTCGTAAGAGt > 1:7498002/1‑149 (MQ=255) gtggCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTTGTAATAGTg < 1:7010338/146‑1 (MQ=16) gTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTTGTAATAGTg > 1:8976567/1‑149 (MQ=25) gTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTTGTAATAGTg > 1:6751647/1‑149 (MQ=25) gTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTTGTAATAGTg < 2:1112357/149‑1 (MQ=25) gTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTTGTAATAGTg < 2:4622138/149‑1 (MQ=25) tAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTTGTAATAGTGa < 1:7690139/149‑1 (MQ=25) tAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTTGTAATAGTGa < 2:5039071/149‑1 (MQ=25) aGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTTGTAATAGTGaa > 1:830221/1‑149 (MQ=21) aGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTTGTAATAGTGaa > 1:9331565/1‑149 (MQ=21) gCATTTTTGATGTGAACCCGAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTTGTAATAGTGAAt < 2:2115530/149‑1 (MQ=16) gCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTATACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGTATAAGTTAAACGATATTAGATTGTCCTCTTCTAGTTTAATTTTTTCTTAATTCGTATCGTGTTGTATTAGttatt > 2:9510414/1‑145 (MQ=11) gCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTC‑TTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTTGTAATAGTGAAt > 1:2191176/1‑149 (MQ=18) agttttGATTGGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTTTC‑TTTTTTTGTTATTTTTAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTTGTAATAGTGAATcc < 2:3788663/147‑1 (MQ=11) | ATTAGAAGAAAAAGAAGCGTTTGATTATATAAAAAATAATTAAACATTTTTAGATTATTGTATTTATTATAGTAAGAAATTAAAAAAAGTAGCATTTTTGATGTGAACCCCAAAAGCTAGACTTTTTAGACAAGAATAATTTCTTGTCTTTTTTTTGTTATTTTGAATAAGTTAAACGATATTGGATTGGACTCATCCAGTTCAATTTTTTCTTAATTCGTTTCGTGTTGTAATAGTGAATCCAT > AM406671/1201620‑1201864 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |