| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,318,548 | (A)7→6 | coding (34/348 nt) | llmg_1344 → | hypothetical protein predicted by Glimmer/Critica |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,318,542 | 0 | A | . | 97.5% | 3842.4 / 71.3 | 848 | coding (28/348 nt) | llmg_1344 | hypothetical protein predicted by Glimmer/Critica |
| Reads supporting (aligned to +/- strand): ref base A (2/19); new base . (415/411); total (418/430) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.94e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 905 total aligned reads displayed.
AAGACCCTTAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGAAAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAGGTCTATA > AM406671/1318394‑1318690 | aGACCCTTAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGaa > 2:3186360/1‑149 (MQ=255) gACCCTTAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGaaa > 2:8250246/1‑149 (MQ=255) tAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGTAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAAGCTTGGGTTCTTGAATCCTTTGaaaaaaggc > 2:3297083/1‑146 (MQ=255) ttGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGAtt < 2:7970423/149‑1 (MQ=255) tGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCCGGATATGAAAGCAAAATTAGGAAATACAATCATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGAttt > 1:2486988/1‑149 (MQ=255) tGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGAttt < 1:4537346/149‑1 (MQ=255) gAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTc < 1:2109432/149‑1 (MQ=255) gAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTc < 1:2958767/149‑1 (MQ=255) aGCTTTATTTTTTATGTTCAGTGATAGATGAGGAGCAGGATATGAAAGCAAACTTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAAACTTGGATTCTTAAATCCTTTG‑AAAAAAGGCAGATCTcc > 2:129879/1‑149 (MQ=255) ttATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGt > 1:5507437/1‑149 (MQ=255) ttATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGt < 1:9021665/149‑1 (MQ=255) ttATTTTTTATGAACAGAGATAGATGAGGAGCAAGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGAAAAATCAGCACCAGTAAAAAAGAAATTGAACCTTGGGTTCTTGAAAACATT‑AAAAAAAGGCAGATTTCCTGGt < 2:5829357/149‑1 (MQ=255) aTTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGGAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCa < 1:5880950/149‑1 (MQ=255) ttttttATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAg > 2:2660841/1‑149 (MQ=255) tGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAAtt < 1:511864/149‑1 (MQ=255) gAACAGAGATAGATGCGGAGGAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGGAAATAAGTACCAGTAAACCCGAAAATGAACTTTGGGTTCTTGCATCCTTTG‑AAAAGAGGCAGGTATCTTGGTTAGGGCAAttt > 2:8679610/1‑149 (MQ=255) aaCAGAGATAGATGAGGAGCAGGATATGAAACCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTg < 1:7619709/149‑1 (MQ=255) cAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCt > 2:8758202/1‑149 (MQ=255) cAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCt > 2:6899898/1‑149 (MQ=255) gagaTAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTAt > 1:6596698/1‑149 (MQ=255) tagatGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAg > 1:2806136/1‑149 (MQ=255) agatGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGGTTTCCTGGTCAGGCCAATTTGCTATGAAGa < 2:4321440/149‑1 (MQ=255) gatGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAGTTAGCACCAGGAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCGGGTCAGGCCAATTTGCTATGAAGAc > 2:2326773/1‑149 (MQ=255) atGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACt > 1:361840/1‑149 (MQ=255) tGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATACTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTg < 2:9623779/149‑1 (MQ=255) aggagCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTgca > 1:10314308/1‑149 (MQ=255) gCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTgcaagca > 1:4919197/1‑149 (MQ=255) ggATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCt > 2:10285522/1‑130 (MQ=255) ggATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCaagcaagc < 1:1693092/149‑1 (MQ=255) ggATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAA‑AAATAAAAAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCaagcaagc < 2:6714453/149‑1 (MQ=255) gATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAagcaagca > 2:9152479/1‑149 (MQ=255) atatGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAagcag > 2:1801868/1‑149 (MQ=255) atatGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAagcag < 2:5395820/149‑1 (MQ=255) tatGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAagcagc > 1:3333386/1‑149 (MQ=255) tGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATACTTT‑AAAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCaa < 2:6391687/149‑1 (MQ=255) aaaGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACt > 1:8431949/1‑149 (MQ=255) aaGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTa > 2:9365179/1‑149 (MQ=255) gCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTCTGAAGACTGCAAGCAAGCAGCAACTAAt > 1:6989365/1‑149 (MQ=255) aaaTTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGc < 1:1408748/149‑1 (MQ=255) aaTTAGGAAATACAATTATAGATTTTTGGAAAACCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCt < 2:2816229/149‑1 (MQ=255) atgaGGAAATACAATTATAGATGGTTGGGAAGTCAGCACCAGTGAACCCGAAAGTGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCGGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTa < 2:3648800/146‑1 (MQ=255) aGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTg < 1:2622141/149‑1 (MQ=255) gAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGa > 2:10064963/1‑149 (MQ=255) aaaTACAATTATAGATTTTTTGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGaa > 2:2071595/1‑149 (MQ=255) aaaTACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGaa > 2:148525/1‑149 (MQ=255) aaTACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAAt > 2:4537413/1‑149 (MQ=255) aaTTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGAccc > 1:2364154/1‑149 (MQ=255) ttATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCaa > 1:4207519/1‑149 (MQ=255) ataGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCaaaa > 1:8158203/1‑149 (MQ=255) ataGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCaaaa > 2:8375778/1‑149 (MQ=255) aGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAat > 2:7484046/1‑149 (MQ=255) gATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAata < 1:5969027/149‑1 (MQ=255) ttttttGTAAATCAACACCAGTAAACCCGAAAATTAACATAGGGTTTTTGAATTCTATG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGAAAGAAGCAACTAATAGCTAGTGGAATGACCAAAAAATAtt < 2:6568/149‑1 (MQ=255) tttttGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATAtt < 1:6821144/149‑1 (MQ=255) ttttGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTc > 2:56218/1‑149 (MQ=255) tttGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCa > 1:1912021/1‑149 (MQ=255) ttGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAg > 2:9827990/1‑149 (MQ=255) tGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGc < 1:4815584/149‑1 (MQ=255) aaaTCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGAc < 2:5018144/149‑1 (MQ=255) aaTCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGAcc < 1:7488486/149‑1 (MQ=255) aTCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCa > 2:3780818/1‑149 (MQ=255) tCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCaa < 1:3087975/149‑1 (MQ=255) cAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAAc > 1:7172260/1‑149 (MQ=255) cACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACata > 2:162244/1‑149 (MQ=255) cACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTAAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACata > 1:4038532/1‑149 (MQ=255) aCCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACataa > 2:7822345/1‑149 (MQ=255) aCCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACataa < 2:4785402/149‑1 (MQ=255) ccAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACataat < 2:307082/149‑1 (MQ=255) ccAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACataat < 2:1924569/149‑1 (MQ=255) cAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCGTTTG‑GAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTAGAATGACCCAAAAATATTCAGCTGACCAACataata > 2:7048607/1‑149 (MQ=255) cAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACataata > 1:9416412/1‑149 (MQ=255) gTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAAtata < 1:10215082/149‑1 (MQ=255) aaaCCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAgg < 1:7067766/149‑1 (MQ=255) aaaCCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAgg > 2:1058208/1‑149 (MQ=255) aCCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCa > 1:8690563/1‑149 (MQ=255) cacGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACACAAAAATATTCAGCTGACCAACATAATATAGGCaa < 2:5182798/147‑1 (MQ=255) aaaaTGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGGCCCAAAAATATTCAGCTGACCAACATAATATAGGCAATgag > 1:3849624/1‑149 (MQ=255) aaaaTGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATgag < 1:5325705/149‑1 (MQ=255) aaaaTGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATgag < 2:4637900/149‑1 (MQ=255) aaaTGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATgaga > 1:7933111/1‑149 (MQ=255) aaTGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGAt < 1:9891503/149‑1 (MQ=255) aaTGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAAGAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGAt < 1:1280943/149‑1 (MQ=255) aTGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATa > 1:6344775/1‑149 (MQ=255) tGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCTATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATGATATAGGCAATGAGATaa > 2:6089883/1‑149 (MQ=255) gAACCGTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATaaa < 2:417283/149‑1 (MQ=255) aCCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAAt < 2:8977609/149‑1 (MQ=255) cTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATAc > 1:731968/1‑149 (MQ=255) ttGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACt > 1:9704169/1‑149 (MQ=255) ttGGGTTATTGAATCGTTTG‑AAAAAAGGCAGATTTCTTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCTAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACt < 2:3501236/149‑1 (MQ=255) tGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACtt > 2:2986035/1‑149 (MQ=255) gggTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCACAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTg < 1:5712536/149‑1 (MQ=255) ttCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGAc > 1:8834924/1‑149 (MQ=255) cTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTg < 1:4341775/149‑1 (MQ=255) tGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGt < 2:7145408/149‑1 (MQ=255) aTCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAg > 1:6042872/1‑149 (MQ=255) aTCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAg < 1:1561532/149‑1 (MQ=255) tCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAgg > 2:3955017/1‑149 (MQ=255) tCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAgg < 1:9203687/149‑1 (MQ=255) ccTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAGGt < 2:7718283/149‑1 (MQ=255) cTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAGGTc > 1:10029070/1‑149 (MQ=255) | AAGACCCTTAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGAAAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAGGTCTATA > AM406671/1318394‑1318690 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |