| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,921,462 | Δ1 bp | coding (49/660 nt) | llmg_1941 ← | conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,921,461 | 0 | C | . | 99.4% | 5404.3 / 27.7 | 1156 | coding (50/660 nt) | llmg_1941 | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/1); major base . (585/555); minor base A (2/5); total (588/568) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1189 total aligned reads displayed.
CGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATGTTGACCATTAGGCATCTGGGCAAAATTCCGCCATCCACTCCATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATCCCTTTTCAAAAGTTTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACA > AM406671/1921312‑1921607 | cGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATTc > 1:1442117/1‑149 (MQ=255) tGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATGTGGGCAAAATTcgcca > 1:7053057/1‑145 (MQ=255) tGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATTcgcca > 2:250046/1‑145 (MQ=255) gACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCAt > 2:8317906/1‑149 (MQ=255) aCATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATc < 1:4582160/149‑1 (MQ=255) tCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAATCAACATACATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCAc < 2:7535292/149‑1 (MQ=255) tCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCAc > 2:776916/1‑149 (MQ=255) cgccAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACTcat > 1:6632465/1‑147 (MQ=255) ccAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACTcatta < 1:6451789/149‑5 (MQ=255) cAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTaa > 1:4073646/1‑149 (MQ=255) tGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGa > 1:8929550/1‑149 (MQ=255) tGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGa > 2:560974/1‑149 (MQ=255) gAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGaa < 1:3564867/149‑1 (MQ=255) gAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAA‑GGTAACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGaa > 2:5739039/1‑149 (MQ=255) aaCCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGaaa > 1:5358102/1‑149 (MQ=255) aaaaCAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATc < 1:7771542/149‑1 (MQ=255) aaCAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGa > 2:5920638/1‑149 (MQ=255) aaCAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGa < 2:2305332/149‑1 (MQ=255) aaCAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGa > 2:1498231/1‑149 (MQ=255) aCAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGaa > 1:9473328/1‑149 (MQ=255) aCAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGaa < 1:2532893/149‑1 (MQ=255) cAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGaaa > 1:2817419/1‑149 (MQ=255) aaTTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCGGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGtt < 1:7533575/149‑1 (MQ=255) aTTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTg > 1:10420628/1‑149 (MQ=255) ttGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGt < 1:9908944/149‑1 (MQ=255) tGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTa > 1:3431071/1‑149 (MQ=255) tGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTa < 1:2322970/149‑1 (MQ=255) agAATCCCCAGGAAAAAAAGGGAACAATACTAAACCTGTTTAAATAAAGATAATCGCACCTAAAACAACATAAATCCAAATG‑TGAACATTAGCCTTCTGGGAAAAATT‑CGCCATCAAC‑ACATAAAAGAAACCAAAAATCGAAAgcagta > 2:2813635/2‑144 (MQ=255) aaTCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACa > 2:6153136/1‑149 (MQ=255) aTCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACaa > 2:10259697/1‑149 (MQ=255) ccccAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAAc > 1:10022683/1‑149 (MQ=255) cAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACata < 1:2625821/149‑1 (MQ=255) aaGGAAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACata < 2:7171314/148‑1 (MQ=255) aGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACataa < 2:9137235/149‑1 (MQ=255) aGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACataa < 2:700828/149‑1 (MQ=255) aGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACataa < 2:3504569/149‑1 (MQ=255) aGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACataa > 2:8056917/1‑149 (MQ=255) ggTAAAAATGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACataat < 1:6053718/149‑1 (MQ=255) ggTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACataat < 1:7312568/149‑1 (MQ=255) gTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACataata > 2:4949405/1‑149 (MQ=255) gTAAAAAGGGGAAAATTACTAAACCTATATCAATAAAGATAATCGATACTAAAACAACATAAATCCAAATG‑TAACCAAAAGACAAATAAGCAAAATT‑CGTCATACA‑AACATAAAAAAAAAAAAAAATCGAAAGTTGTACAAACataata < 2:3374347/149‑1 (MQ=255) tAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAatat < 1:4994337/149‑1 (MQ=255) tAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAatat > 2:1618893/1‑149 (MQ=255) aaaaaGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAatatt < 2:408631/149‑2 (MQ=255) aaGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCt > 2:8799324/1‑149 (MQ=255) aaGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCt < 1:6845804/149‑1 (MQ=255) agagtaaaaATACTAAACCTGTTTCAATAAAGATAATCGCTCATAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAACATT‑CGCCATCCACT‑CATTAAAGAAACCAAAACTCGAAAGTTGTACAAACATAATATGCCtt < 2:9389010/144‑1 (MQ=255) aGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCtt < 2:4371410/149‑1 (MQ=255) ggAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTc > 1:7998977/1‑149 (MQ=255) cTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAGttaa > 2:2971292/1‑147 (MQ=255) aaCCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAGTTAaaaa > 1:764401/1‑149 (MQ=255) aCCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAAt > 2:9794289/1‑149 (MQ=255) tGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCt > 2:2644801/1‑149 (MQ=255) gTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CACTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCtt > 2:8989043/1‑149 (MQ=255) tCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACa < 1:3916485/149‑1 (MQ=255) aTAAAGATAAGCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACagta < 2:6267946/149‑1 (MQ=255) aaaGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACagtagt > 1:5484634/1‑149 (MQ=255) aaGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGtt > 1:4783636/1‑149 (MQ=255) aaTCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAGGTTGAACAAACATAATATTCCTATTTAAAAG‑TTAAAAATTCTTACAGTAGTTCtttt > 2:6515824/1‑149 (MQ=255) aTCGCTCCTAAAACAACATAAATACAAATG‑TGACCATTAGGCATCTGGGCAAAA‑AACGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATTTTCCTTAAAAAAA‑AAAAAAAATTCTTACAGTAGTTCTGttt < 2:2104140/149‑1 (MQ=255) tCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTa < 1:7164570/149‑1 (MQ=255) cGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCCCT‑CATTAAAGAAACCAAAAATCGACCGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAGAATTCTTACAGTAGTTCTGTTTAc < 1:8394367/149‑1 (MQ=255) cGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTAc > 2:3137003/1‑149 (MQ=255) cTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACtt > 2:1737220/1‑149 (MQ=255) ccTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTaa < 1:6258895/149‑1 (MQ=255) acTAAAACAACACAAATCCAAATG‑TGACCAATAGGCAACTGGGCAAAA‑GCCGCCATCCACT‑CATAAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTaa < 2:8140672/148‑1 (MQ=255) tAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAAt > 2:4705668/1‑149 (MQ=255) aaaCAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAg < 1:10201847/149‑1 (MQ=255) aaaCAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAg > 1:5869774/1‑149 (MQ=255) aacaacATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGa > 2:4535916/1‑149 (MQ=255) caacaTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTGTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAAt < 1:5748741/149‑1 (MQ=255) aacaTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATa > 1:2078128/1‑149 (MQ=255) aacaTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATa < 1:9694050/149‑1 (MQ=255) aacaTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATa < 1:9147272/149‑1 (MQ=255) acaTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATAc > 1:1286184/1‑149 (MQ=255) acaTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATAc < 1:876396/149‑1 (MQ=255) caTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACa > 1:809215/1‑149 (MQ=255) tAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATa > 2:9613640/1‑149 (MQ=255) aaaTCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATaa > 1:3261336/1‑149 (MQ=255) tCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAata < 2:5131136/149‑1 (MQ=255) tCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAata > 2:1351316/1‑149 (MQ=255) ccAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAatat < 2:5356893/149‑1 (MQ=255) ccAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAatat > 2:8618888/1‑149 (MQ=255) aaaTG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATAtct > 1:9054043/1‑149 (MQ=255) aatgtGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATAtctc > 2:3691250/5‑149 (MQ=255) atgtGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATctct > 2:6856422/4‑149 (MQ=255) atgtGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATctct > 1:2978046/4‑149 (MQ=255) tgtGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACACACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTa > 1:164333/3‑149 (MQ=255) gtGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTAt < 2:3969059/148‑1 (MQ=255) ctGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCCAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGTATACATAAATATCTCTAt < 2:10070062/148‑1 (MQ=255) gACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCa > 1:82145/1‑149 (MQ=255) gACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCa < 2:7346599/149‑1 (MQ=255) ccATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAg > 1:4285392/1‑149 (MQ=255) ttAGGCATCTGTGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAACAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCAc < 2:1043800/149‑1 (MQ=255) aGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTc > 2:1211763/1‑149 (MQ=255) ggCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCg > 1:1815026/1‑149 (MQ=255) tCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCa < 1:5151941/149‑1 (MQ=255) tCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCa < 1:4423182/149‑1 (MQ=255) cTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCaa > 1:5682960/1‑149 (MQ=255) gggCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAAtt < 1:8609092/149‑1 (MQ=255) | CGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATGTTGACCATTAGGCATCTGGGCAAAATTCCGCCATCCACTCCATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATCCCTTTTCAAAAGTTTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACA > AM406671/1921312‑1921607 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |