| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,921,531 | Δ1 bp | intergenic (‑21/‑364) | llmg_1941 ← / → glnP | conserved hypothetical protein/glutamine ABC transporter permease and substrate binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,921,529 | 0 | T | . | 97.7% | 5412.5 / 110.5 | 1199 | intergenic (‑19/‑366) | llmg_1941/glnP | conserved hypothetical protein/glutamine ABC transporter permease and substrate binding protein |
| Reads supporting (aligned to +/- strand): ref base T (16/11); new base . (595/570); total (612/587) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.41e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1231 total aligned reads displayed.
TTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATGTTGACCATTAGGCATCTGGGCAAAATTCCGCCATCCACTCCATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATCCCTTTTCAAAAGTTTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACTTTTCTTATATTTTATTCAGGAGAACTCTTCAAATTTCA > AM406671/1921378‑1921674 | aaCCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAGTTAaaaa > 2:2299302/1‑149 (MQ=255) cTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTc < 1:5242269/149‑1 (MQ=255) tGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCt > 2:2644801/1‑149 (MQ=255) gTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCAC‑CCATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAACATTCtt > 2:5230807/1‑149 (MQ=255) tCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACa < 1:1461677/149‑1 (MQ=255) cAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACag < 1:127003/149‑1 (MQ=255) cAATAAAGATAATCGCTCCTAAAACAACAGAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACag > 2:6450523/1‑149 (MQ=255) aaTAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACagt > 2:8628009/1‑149 (MQ=255) aaTAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACagt < 1:7149339/149‑1 (MQ=255) tAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAAGATAATATTCCGTTTCAAAAG‑TTAAAAATTCTTACagtag > 1:7579878/1‑149 (MQ=255) aaaGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACagtagt < 1:1670022/149‑1 (MQ=255) aaaGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCGTTTCAAAAG‑TTAAAAATTCTTACagtagt > 2:6218755/1‑149 (MQ=255) aGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTATTCAAAAG‑TTAAAAATTCTTACAGTAGTTc > 2:4224498/1‑149 (MQ=255) tAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGt < 1:4790347/149‑1 (MQ=255) aTCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGttt > 1:8785919/1‑149 (MQ=255) tCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTa < 1:7469573/149‑1 (MQ=255) cGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTAc > 2:3137003/1‑149 (MQ=255) cGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTAc > 1:7729847/1‑149 (MQ=255) gCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACt < 2:157808/149‑1 (MQ=255) ccTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTaa < 2:1227908/149‑1 (MQ=255) tAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAAt > 1:8395196/1‑149 (MQ=255) aacaacATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATAAAAGAAACAAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGa < 2:2479125/149‑1 (MQ=255) aacaacATAAAGCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGa < 2:7071378/149‑1 (MQ=255) aacaacATAAACCCAAATG‑TGACCATTAGGCAGCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAATAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGa < 1:2398215/149‑1 (MQ=255) acaacaTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGaa > 1:4583848/1‑149 (MQ=255) caacaTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAAt < 1:5970274/149‑1 (MQ=255) caacaTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTGTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAAt < 1:5748741/149‑1 (MQ=255) caacaTAAATCAAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATAAAAAAAAAAAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAAt < 2:9172211/149‑1 (MQ=255) aacaTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATa < 1:9694050/149‑1 (MQ=255) aacaTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATa < 2:10172763/149‑1 (MQ=255) aacaTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑ATAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATa < 2:9019630/149‑1 (MQ=255) acaTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATAc < 1:9130966/149‑1 (MQ=255) tAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATa > 2:9613640/1‑149 (MQ=255) aaaTCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATaa > 1:8973609/1‑149 (MQ=255) aTCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAat < 1:736482/149‑1 (MQ=255) cAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATAtc > 1:1896714/1‑149 (MQ=255) aaaTG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATAtct < 1:10189475/149‑1 (MQ=255) aatgtGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATAtctc < 2:540886/145‑1 (MQ=255) atgtGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATctct < 1:8073436/146‑1 (MQ=255) atgtGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATctct > 1:4226693/4‑149 (MQ=255) gtGACCAAAAGGCATCGGGGAAAAATT‑GGCCATGCACT‑CACTAAAGCAACCAAAAATCGAAAGTAGTAAAAAAATAAAATTCCTTTTCAAAAG‑TTAAAAACTCTTACAGTAGCTCTGTTTACTTAAATAGAATACATAAGTATATTTAt > 2:7353044/2‑149 (MQ=255) gACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCa > 1:82145/1‑149 (MQ=255) ccATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAg > 2:4631356/1‑149 (MQ=255) aTCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTc < 2:3714205/149‑1 (MQ=255) cTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCaa > 2:8220546/1‑149 (MQ=255) gCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAAtttt > 1:6580308/1‑149 (MQ=255) aaaaTT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTac < 2:846373/149‑1 (MQ=255) aaaTT‑CGCCATCCACT‑CATTAAAGAAACGAAAAATCGAAAGTTGTACAAACATCATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTaca > 2:6087561/1‑149 (MQ=255) ttcGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTacaaca < 1:8925932/147‑1 (MQ=255) ttcGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTacaaca > 1:9996228/3‑149 (MQ=255) gCCATCCACT‑CATCAAAGATACCAAAAATCGAAAGTTGTACAAACATAATAGTCCTTTTCAAAAG‑TTAACAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACaaaa < 1:5092646/149‑1 (MQ=255) cATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAg < 1:8609770/149‑1 (MQ=255) cATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAg > 1:9391010/1‑149 (MQ=255) cATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAg > 2:6611449/1‑149 (MQ=255) aTCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAgg < 2:3497016/149‑1 (MQ=255) tCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTTCTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGa < 1:6153136/149‑1 (MQ=255) tCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGa > 2:7787950/1‑149 (MQ=255) cactcATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATCCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACt < 1:10395290/145‑1 (MQ=255) cATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACttttt > 2:5007595/1‑149 (MQ=255) cATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACttttt < 1:3678467/149‑1 (MQ=255) cATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTAAATAAAAAAAAAAAAAGGACttttt < 2:2147928/149‑1 (MQ=255) aTTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTg > 1:269706/1‑149 (MQ=255) tAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGAc > 2:8097781/1‑149 (MQ=255) aaaGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACa > 2:3331614/1‑149 (MQ=255) aaaGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACa > 1:3984438/1‑149 (MQ=255) aaaGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACa < 1:1004376/149‑1 (MQ=255) aaaGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATGTTACAACAAAAAGGACTTTTTGACa < 2:5685692/149‑1 (MQ=255) gAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAata > 2:2902609/1‑149 (MQ=255) gAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAata > 1:2564511/1‑149 (MQ=255) gAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAata < 1:6382532/149‑1 (MQ=255) aaaCCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAatat < 1:5665982/149‑1 (MQ=255) aCCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATaa < 2:8871618/149‑1 (MQ=255) ccAAAAATCGAAAGTTGTACAAACATAATATTCCTATTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACACCAAAAAGGACTTTTTGACAATATaaa > 1:3165331/1‑149 (MQ=255) aaaaaTCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACt > 1:9839450/1‑149 (MQ=255) aaaaTCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACtt < 1:444045/149‑1 (MQ=255) aaaaCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTAACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAAAAAAAAAAAAAAAAGGACTTTTTGACAATATAAACttt < 2:5562006/149‑1 (MQ=255) aaaTCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACttt > 2:406467/1‑149 (MQ=255) aaaTCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACttt > 1:2967722/1‑149 (MQ=255) aTCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACtttct > 2:7205509/1‑147 (MQ=255) cGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACtttctta > 2:4443555/1‑145 (MQ=255) cGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACtttctta > 1:2235377/1‑145 (MQ=255) cGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACtttctta < 1:9547995/149‑5 (MQ=255) aaaGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTtata > 2:6907894/1‑149 (MQ=255) aaaGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTtata < 1:5867998/149‑1 (MQ=255) aaaGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTtata < 1:6907894/149‑1 (MQ=255) aaaGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTtata > 1:7920612/1‑149 (MQ=255) aaGTTGTACAAACATAATATTCATTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGATTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGAAATTTTTGACAATATAAAC‑ATTCTTatat > 2:391484/1‑149 (MQ=255) aGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTATACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATAtt < 2:1751108/149‑1 (MQ=255) ttGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATAtttt < 1:3458310/149‑1 (MQ=255) tGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGTCAATTTAAAC‑TTTCTTATATTTTa > 2:942015/1‑149 (MQ=255) gTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTAt > 2:194508/1‑149 (MQ=255) tACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTAtc > 1:5469613/1‑148 (MQ=255) aCAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTAtca > 2:9784652/1‑147 (MQ=255) cAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTAtcag > 2:134915/1‑146 (MQ=255) aaCATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTAtcagag > 1:384109/1‑144 (MQ=255) aaCATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTAtcagag > 2:10471440/1‑144 (MQ=255) cATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTGAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTAt < 2:5872078/142‑1 (MQ=255) atatTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTA‑TCA‑GAGAActct < 2:764037/149‑1 (MQ=255) ttccTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTA‑TCA‑GAGAActctcaa > 1:6778646/3‑146 (MQ=255) ttccTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTA‑TCA‑GAGAActctcaa < 2:7957274/147‑4 (MQ=255) | TTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATGTTGACCATTAGGCATCTGGGCAAAATTCCGCCATCCACTCCATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATCCCTTTTCAAAAGTTTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACTTTTCTTATATTTTATTCAGGAGAACTCTTCAAATTTCA > AM406671/1921378‑1921674 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |