| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 2,183,058 | (A)5→4 | coding (399/1161 nt) | llmg_2218 ← | predicted transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 2,183,054 | 0 | A | . | 99.4% | 5902.8 / 18.0 | 1249 | coding (403/1161 nt) | llmg_2218 | predicted transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (4/3); new base . (668/571); total (674/575) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1345 total aligned reads displayed.
TTAACTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGAAAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCTTGCTGATAG > AM406671/2182906‑2183202 | ttAACTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGa < 2:2410922/149‑1 (MQ=255)ttAACTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGa > 1:6549167/1‑149 (MQ=255) tAACTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaa > 2:2565351/1‑149 (MQ=255) tAACTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaa < 2:820741/149‑1 (MQ=255) aCTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaaaa > 2:1573734/1‑149 (MQ=255) tttATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaaaatcc > 1:2696373/1‑146 (MQ=255) aTTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTCATATAATTAAAAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGt > 2:2675191/1‑149 (MQ=255) tttCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGtt < 1:6122811/149‑1 (MQ=255) tCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTcc > 1:2039794/1‑149 (MQ=255) cTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCg > 2:1917203/1‑149 (MQ=255) tGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGa < 2:7976976/149‑1 (MQ=255) gATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGaa < 2:1269220/149‑1 (MQ=255) ttattCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAAtg < 1:3091688/149‑1 (MQ=255) tCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCa > 1:8696205/1‑149 (MQ=255) tCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCa > 2:5376613/1‑149 (MQ=255) gCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATg < 1:9377591/149‑1 (MQ=255) cATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGa > 2:10437897/1‑149 (MQ=255) atatTTGTGTGCTTCATTTTGAATCATTNCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAg > 1:5766432/1‑149 (MQ=255) tatTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGt > 1:738607/1‑149 (MQ=255) atTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTc < 2:7523763/149‑1 (MQ=255) atTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTc > 2:5195464/1‑149 (MQ=255) tttGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTcc < 2:9116599/149‑1 (MQ=255) ttGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCa > 2:591825/1‑149 (MQ=255) gtgtgCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAg < 1:1278684/149‑1 (MQ=255) gtgtgCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAg > 2:3393796/1‑149 (MQ=255) gtgtgCTTCATTTTGAATCATTTCTGCTGCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAg < 1:7205813/149‑1 (MQ=255) gtgCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCa < 2:1787255/149‑1 (MQ=255) gtgCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAAGGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCa < 1:6383808/149‑1 (MQ=255) tgCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCAt < 1:3913349/149‑1 (MQ=255) gCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTGCGGAATGTGCATGAGTCCAAGCAtt < 2:5708101/149‑1 (MQ=255) gCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCAtt > 1:10408908/1‑149 (MQ=255) ttCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGc < 2:4658579/149‑1 (MQ=255) tCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCa > 2:6387561/1‑149 (MQ=255) cATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCat > 1:5612146/1‑149 (MQ=255) ttttGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCatca < 1:7502335/149‑1 (MQ=255) ttttGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCatca > 1:223925/1‑149 (MQ=255) ttGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCatcaat < 1:9060145/149‑1 (MQ=255) tGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCatcaatc > 2:7670727/1‑149 (MQ=255) tGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCatcaatc < 1:4806746/149‑1 (MQ=255) gAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATTCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCatcaatca < 2:7052416/149‑1 (MQ=255) cATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCAcatc < 2:4301776/149‑1 (MQ=255) cATTTCTGCTTCCGCAAACTCTTCTCTTAACTGGATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCAcatc > 2:6069194/1‑149 (MQ=255) aTTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCAcatcc > 2:3881702/1‑148 (MQ=255) tttCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCAcatcat > 2:9281356/1‑149 (MQ=255) tGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAgg > 2:4105036/1‑149 (MQ=255) cTTCCGCAAACTCTTCTCTTAACTGTATCATATCCGACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATATTATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTa < 2:6624152/149‑1 (MQ=255) cTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTa < 1:1652125/149‑1 (MQ=255) gCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCaaa < 1:6025965/149‑1 (MQ=255) cAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCaaaa > 2:8916984/1‑149 (MQ=255) aaaCTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAAt < 2:479295/149‑1 (MQ=255) aCTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATTCTGTTCCGGAATGTGCAGAAGTCACAGCATTGCATCAATCACATCATAAGGTAGCAAAAttt > 2:3728119/1‑149 (MQ=255) ctcttctcttAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAAtttt < 2:8755451/149‑1 (MQ=255) tcttctcttAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAAttttt > 1:10174440/1‑149 (MQ=255) ctcttAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCAc < 1:9228138/149‑1 (MQ=255) ttAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATAACTCACATCATAAGGTAGCAAAATTCTTCCACttt > 2:9830956/1‑149 (MQ=255) tAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTc < 1:3680329/149‑1 (MQ=255) tAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTc > 1:9730930/1‑149 (MQ=255) aaCTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCa > 1:7883576/1‑149 (MQ=255) cTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCaaa < 2:728262/149‑1 (MQ=255) gTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATa > 1:961336/1‑149 (MQ=255) tATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAg > 1:5041995/1‑149 (MQ=255) cATATCCAACCTGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATAGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCtt < 1:8525299/149‑1 (MQ=255) cATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCtt < 1:10001625/149‑1 (MQ=255) cATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCtt < 1:7669911/149‑1 (MQ=255) tatCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCa < 1:4495739/149‑1 (MQ=255) atCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCaa > 2:3050525/1‑149 (MQ=255) tCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCaaa < 1:8034430/149‑1 (MQ=255) aCCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGaa > 2:9632724/1‑149 (MQ=255) ccAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAAc > 2:10274912/1‑149 (MQ=255) cAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACa > 2:1372682/1‑149 (MQ=255) aGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAg < 1:2488924/149‑1 (MQ=255) aGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAg < 1:3460264/149‑1 (MQ=255) gTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAgg > 1:1131733/1‑149 (MQ=255) gTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAgg < 2:8477060/149‑1 (MQ=255) tGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGAt < 1:1458970/149‑1 (MQ=255) gATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGAtt < 2:10053877/149‑1 (MQ=255) atatAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGAttt < 1:4101447/149‑1 (MQ=255) tataATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTa < 2:6945905/149‑1 (MQ=255) taATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACt < 2:3577265/149‑1 (MQ=255) taATGAACAAAATAACCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGGATGTGCATGAGTCCAAGCATTGCAGCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACt < 1:9820759/149‑1 (MQ=255) aaTGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTc > 1:17995/1‑149 (MQ=255) cAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTg > 1:8163651/1‑149 (MQ=255) aaaaTAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTgg > 2:2300427/1‑149 (MQ=255) aaaaTAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTgg < 2:5493739/149‑1 (MQ=255) aaaTAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGa < 1:3247711/149‑1 (MQ=255) aataatCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGaa > 1:6982916/1‑149 (MQ=255) ataatCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAAt > 1:6749440/1‑149 (MQ=255) atcatcCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGGAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATaca > 2:3216138/1‑147 (MQ=255) cTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAatc > 2:4997749/1‑149 (MQ=255) ttACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAatca > 1:5332793/1‑149 (MQ=255) ttACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAatca > 2:2843299/1‑149 (MQ=255) ttACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTAACTCCAACTGGAATACAAAAatca > 1:2922745/1‑149 (MQ=255) ttACTTCCATTGATAATATAAG‑AAAATCATGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTACAACTGGAATAAAAAAatca < 2:4436492/149‑1 (MQ=255) cTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAAtcatca > 1:8277043/1‑149 (MQ=255) ccATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGa > 1:6282929/1‑149 (MQ=255) aTTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATa < 1:4238147/149‑1 (MQ=255) ttGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAg > 1:882561/1‑149 (MQ=255) aataTAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCTTg > 1:4624861/1‑149 (MQ=255) aataTAAG‑AAAATCCTGTACCGAAATGTGCATGAGTCCAAGCATTGCATCAATCACAACATAAAGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGTATTTACTCAAAAAAAAAAAAAAAAATCATCACGATAGCCTTg < 2:2066436/149‑1 (MQ=255) tataAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCTTGCt > 2:7831429/1‑149 (MQ=255) | TTAACTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGAAAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCTTGCTGATAG > AM406671/2182906‑2183202 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |