| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 732,731 | +C | coding (210/975 nt) | malR → | putative maltose operon transcriptional repressor, LacI family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 732,730 | 1 | . | C | 99.0% | 4423.9 / 22.6 | 1093 | coding (209/975 nt) | malR | putative maltose operon transcriptional repressor, LacI family |
| Reads supporting (aligned to +/- strand): ref base . (4/7); new base C (561/518); total (567/526) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1132 total aligned reads displayed.
CGAGTCATTAAAGACAGTTCAGAAATTTCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑T‑CGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCAAGTTGAACTTCAATTTTCCG > AM406671/732582‑732873 | cGAGTCATTAAAGACAGTTCAGAAATTTCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑t < 2:321538/149‑1 (MQ=255)cGAGTCATTAAAGACAGTTCAGAAATTTCGGATAAAACGAAAGTAAAAGTTCGCAAAGCAATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑t > 2:4234605/1‑149 (MQ=255) gAGTCATTAAAGACAGTTCAGAAATTTCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑T‑c < 2:2190746/149‑1 (MQ=255) gTCATTAAAGACAGTTCAGAAATTTCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑T‑ccg > 2:5436780/1‑147 (MQ=255) gTCAATAAAGACAGTTCAGAAATTTCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGACGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑T‑ccg > 2:6057139/1‑147 (MQ=255) aTTAAAGACAGTTCAGAAATTTCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTCATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑T‑ccgccg > 1:5398807/1‑144 (MQ=255) aaaGACAGTTCAGAAATTTCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACa < 2:10016591/149‑1 (MQ=255) gACAGTTCAGAAATTTCGGCTAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAg < 1:5125700/149‑1 (MQ=255) gACAGTTCAGAAATTTCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAg > 2:9853891/1‑149 (MQ=255) gACAGTTCAGAAATTTCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAg < 1:8440124/149‑1 (MQ=255) aCAGTTCAGAAATTTCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGCTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGc > 2:8856389/1‑149 (MQ=255) aGTTCAGAAATTTCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCaa < 1:2346130/149‑1 (MQ=255) aGTTCAGAAATTTCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCaa < 1:8599118/149‑1 (MQ=255) cAGAAATTTCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCa > 2:4701985/1‑149 (MQ=255) aattCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGTATTGTGTTATCGTCGTAATGCAGCGGCGCAGATTCTAGCTTCTGAAAAAACAAATACCATTGGGGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACctt < 2:1792684/147‑1 (MQ=255) aTTTCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACctt < 2:8050639/149‑1 (MQ=255) tttCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACcttt < 1:1368848/149‑1 (MQ=255) ttCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACctttc < 1:3025189/149‑1 (MQ=255) tCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACctttct > 1:1238201/1‑149 (MQ=255) tCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACctttct < 2:2037718/149‑1 (MQ=255) ggATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACctttcttt < 2:2683030/149‑1 (MQ=255) ggATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACctttcttt < 2:3756443/149‑1 (MQ=255) ggATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCCGGAAGAACAAAGACCATTGGAGTTGTCTTTCCCCCGGG‑C‑CGCCGACAAAGCAAGTCAACctttcttt < 2:3993976/149‑1 (MQ=255) gATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTa < 1:1717150/149‑1 (MQ=255) aTAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTAt < 2:6771434/149‑1 (MQ=255) aaaaCGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGa < 2:10250888/149‑1 (MQ=255) aaaaCGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGa > 1:2967864/1‑149 (MQ=255) gaCGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCCGGG‑C‑CGCCGACAAAGCAAGTCAACCTTTCTTTATGaaa < 2:447503/148‑1 (MQ=255) aaCGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGaaa < 2:7388969/149‑1 (MQ=255) aCGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGaaaa < 2:4374729/149‑1 (MQ=255) aaaGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAAttt > 1:6671413/1‑149 (MQ=255) aaGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAAtttt > 2:10461262/1‑149 (MQ=255) aaGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAAtttt > 2:5830170/1‑149 (MQ=255) aaGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAAtttt < 1:10236869/149‑1 (MQ=255) tAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGAc < 1:4601190/149‑1 (MQ=255) aaaGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCt > 2:1366477/1‑149 (MQ=255) aGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCtca > 2:4903756/1‑149 (MQ=255) gCAAAGCCATGCATGAATTTGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAACCAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCtgaatcaa < 2:5078818/149‑1 (MQ=255) aaaGCCATGCATGAATTGGGTTATCGTCNTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATg > 1:5772216/1‑149 (MQ=255) aaaGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATg > 1:10058124/1‑149 (MQ=255) aaaGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATg > 2:8525956/1‑149 (MQ=255) aaGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGa > 1:640986/1‑149 (MQ=255) aaGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGa > 1:9809621/1‑149 (MQ=255) aGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGaa > 2:6256069/1‑149 (MQ=255) aGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGaa < 1:3208396/149‑1 (MQ=255) aGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGaa < 2:8123711/149‑1 (MQ=255) ccATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAAc > 1:7612772/1‑149 (MQ=255) atgcatgAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGACAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAACTTTTGACCTCAATCAATCAACCTg > 2:5614825/1‑149 (MQ=255) tgcatgAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGc < 1:4171476/149‑1 (MQ=255) catgAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTc > 1:9280110/1‑149 (MQ=255) atgAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCg < 1:5272283/149‑1 (MQ=255) tGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTa > 1:9070205/1‑149 (MQ=255) tGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTa < 1:1985172/149‑1 (MQ=255) ttATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTatgat < 1:7286170/149‑1 (MQ=255) tcgtAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCg < 2:3053571/149‑1 (MQ=255) cgtAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGa > 2:2888457/1‑149 (MQ=255) cgtAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGa < 1:4358140/149‑1 (MQ=255) aaTGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTg < 2:6990548/149‑1 (MQ=255) tGCAGCGGCTCCGGTTCTTGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GGAC‑CGCCGCGAGAGGCAGTTAAGCTTTCTGTATGACAATTTCGGCCTCACTCAGTGCCCCTGCCGGGGATTAGGATGTGTCCACTGCt < 2:152854/149‑1 (MQ=255) tGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCt < 1:6120359/149‑1 (MQ=255) tGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCt < 1:2149600/149‑1 (MQ=255) aGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATc < 2:2459485/149‑1 (MQ=255) aGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATc > 2:7231737/1‑149 (MQ=255) cGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATcgc > 2:9058373/1‑149 (MQ=255) cAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACgg < 1:3902141/149‑1 (MQ=255) aGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACggg > 1:4768396/1‑149 (MQ=255) aGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACggg > 2:9692718/1‑149 (MQ=255) ttCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACa < 1:3392785/149‑1 (MQ=255) cTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACAtt > 1:7861551/1‑149 (MQ=255) gCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATtcgg < 1:37178/149‑1 (MQ=255) gCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATtcgg < 2:342129/149‑1 (MQ=255) tCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATtcggtcg > 1:5898166/1‑149 (MQ=255) cTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATtcggtcgg > 2:1155265/1‑149 (MQ=255) tGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGga > 2:5246353/1‑149 (MQ=255) tGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGga < 1:1048154/149‑1 (MQ=255) ggAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGgag > 1:6918546/1‑149 (MQ=255) gAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGgaga > 2:6478801/1‑149 (MQ=255) aaaaaCAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGaa < 2:7754988/149‑1 (MQ=255) tACCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAaagaag > 1:9548108/1‑149 (MQ=255) aCCATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGc > 1:2467113/1‑149 (MQ=255) ccATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAGCTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCa < 2:3647686/149‑1 (MQ=255) cATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCaa < 1:4943417/149‑1 (MQ=255) cATTGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCaa < 1:8816865/149‑1 (MQ=255) gttcgAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTGTTGATGAAAATTTTGACCTCAATCAATGAAGCTGCTCGGGATTAGGATGGGTCGATTGCGATCGCGACGGGACACGCGGTCGGAGGATTAAAGAAGCAAg < 2:9447197/145‑1 (MQ=255) ttGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCGACGTTTCTTTATGAAAATTTCGACCTCAATCATTGAAACTGCTCGGGATTATGATGTGTCGAATGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCAAGt < 2:7568402/149‑1 (MQ=255) ttGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCAAGt < 1:5594409/149‑1 (MQ=255) ttGGAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCAAGt < 1:2778106/149‑1 (MQ=255) gAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCAAGTTGa > 1:4038480/1‑149 (MQ=255) gAGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCAAGTTGa > 2:8729196/1‑149 (MQ=255) aGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCAAGTTGaa > 2:9252723/1‑149 (MQ=255) aGTTGTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCAAGTTGaa > 1:8190085/1‑149 (MQ=255) ttGTCTTTCCCCC‑GG‑TCCGCCGACAAATCAAGTCAACCTTTCTTTATGAAAATTTTTACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCAAGTTGAACt < 2:787669/149‑1 (MQ=255) gTCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCAAGTTGAACTTc < 2:6405724/149‑1 (MQ=255) tCTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCAAGTTGAACTTCa < 1:3506974/149‑1 (MQ=255) cTTTCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCAAGTTGAACTTCaa > 1:183735/1‑149 (MQ=255) ttCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCAAGTTGAACTTCAAtt > 1:9395482/1‑149 (MQ=255) tCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCAAGTTGAACTTCAAttt < 1:7996593/149‑1 (MQ=255) tCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCAAGTTGAACTTCAAttt > 1:7126308/1‑149 (MQ=255) tCCCCC‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTAAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTAGGTCGGAGAATTAAAGAAGCAAGTTGAACTTCAAttt > 1:1540651/1‑149 (MQ=255) ccccc‑GG‑TCCGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCAAGTTGAACTTCAAtttt > 2:8328114/1‑149 (MQ=255) | CGAGTCATTAAAGACAGTTCAGAAATTTCGGATAAAACGAAAGTAAAAGTTCGCAAAGCCATGCATGAATTGGGTTATCGTCGTAATGCAGCGGCTCAGATTCTAGCTTCTGGAAAAACAAATACCATTGGAGTTGTCTTTCCCCC‑GG‑T‑CGCCGACAAAGCAAGTCAACCTTTCTTTATGAAAATTTTGACCTCAATCAATGAAACTGCTCGGGATTATGATGTGTCGATTGCTATCGCGACGGGACATTCGGTCGGAGAATTAAAGAAGCAAGTTGAACTTCAATTTTCCG > AM406671/732582‑732873 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |