| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 894,627 | +G | coding (1044/1062 nt) | llmg_0924 → | conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 894,624 | 1 | . | G | 98.1% | 4050.1 / 50.8 | 1047 | coding (1041/1062 nt) | llmg_0924 | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (15/5); new base G (454/572); total (470/577) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.06e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
Only 100 of 1125 total aligned reads displayed.
CAAGTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑G‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGTTTA > AM406671/894476‑894767 | cAAGTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCt > 2:5128696/1‑149 (MQ=255)cAAGTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTGATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCt < 1:8885480/149‑1 (MQ=255) aGTAAATTAAATTCGAAGGATGTAACGATAAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑g‑g < 2:9778533/149‑1 (MQ=255) gTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑g‑g‑g > 1:4509613/1‑149 (MQ=255) taaattaaatTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑g‑g‑gg < 1:4954058/149‑2 (MQ=255) aaattaaattCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑g‑g‑gga > 2:7757076/1‑147 (MQ=255) aattaaattCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑g‑g‑ggaa < 1:3361029/149‑4 (MQ=255) aattCTAAGGATGTAACGTTTAAAAAAACTACTTCGTATGAAATTTGGCTTATCTGGTTAGGCGTATTATTAATTCTTGTAGCTCTTTTCGTCTTATTGTTTATTTTATGGATGAGGCGTAAAAAGGAAGAAGAGGCT‑GTG‑GAagaaga < 2:3747445/149‑1 (MQ=255) attCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGCCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAagag > 1:6162786/1‑149 (MQ=255) ttCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGt > 2:901557/1‑149 (MQ=255) tCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTa < 2:2558955/149‑1 (MQ=255) tCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTa > 1:2149978/1‑149 (MQ=255) cGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTaa < 2:9662233/149‑1 (MQ=255) ggATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GAtt > 1:1171494/1‑149 (MQ=255) ggATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GAtt > 2:1274662/1‑149 (MQ=255) gATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GAttt < 2:271457/149‑1 (MQ=255) aTGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTa > 1:7777281/1‑149 (MQ=255) gTAACTGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTaga < 2:3410437/149‑1 (MQ=255) aaCGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTagaaa > 1:9078556/1‑149 (MQ=255) tgTTAAAAAAACTCCTTAGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTagaaaaag < 2:8586959/148‑1 (MQ=255) ttAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTagaaaaagaa < 1:7155061/149‑1 (MQ=255) aaaaaaCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAgaaaaagaaaaa < 1:2779526/149‑1 (MQ=255) aaaaaCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAAt < 1:8551211/149‑1 (MQ=255) aaCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGa < 2:4883047/149‑1 (MQ=255) aCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGaa > 2:588996/1‑149 (MQ=255) aCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGaa < 1:6488257/149‑1 (MQ=255) cTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGaaa > 1:8640759/1‑149 (MQ=255) ccTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGc > 2:6296546/1‑149 (MQ=255) cTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCt < 2:7269000/149‑1 (MQ=255) ttGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTc < 1:4163724/149‑1 (MQ=255) gTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAAc < 1:9415405/149‑1 (MQ=255) gAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGa < 1:586464/149‑1 (MQ=255) aaaTTGGCTTATCTGGTTAGGCTTATTATTTATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAg < 2:7413047/149‑1 (MQ=255) aaTTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGc < 2:459639/149‑1 (MQ=255) ttGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTa < 2:1802456/149‑1 (MQ=255) tGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTAt < 2:9268782/149‑1 (MQ=255) tGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTAt > 1:252187/1‑149 (MQ=255) tGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTAt > 2:6949008/1‑149 (MQ=255) gCTTATCTAGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAATAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATga < 1:1987758/149‑1 (MQ=255) cTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATgag > 1:3225343/1‑149 (MQ=255) ttATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATgaga < 1:5122164/149‑1 (MQ=255) tATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGagag < 2:4343080/149‑1 (MQ=255) tATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGagag < 1:6720546/149‑1 (MQ=255) tATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGagag < 2:8343935/149‑1 (MQ=255) aTCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGc < 1:3529363/149‑1 (MQ=255) tCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGca > 1:8279683/1‑149 (MQ=255) ttaaggttattattaATTCTTTTAGCTCTTTTGGTCTTATTCTTGATTTTATGGAGGATACGTAAAAAGGTGGAAGATGCT‑G‑G‑GGAGGAGGGGAAGGATTTAGAAAAAGAAAAATTGAGAGCGCAACTTGAAGCTATGAGAGCGCagat > 2:3973512/7‑149 (MQ=255) ttAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACaaat < 1:1626002/149‑1 (MQ=255) tAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACaaata < 1:9604388/149‑1 (MQ=255) gCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACaaataaat < 1:7992255/149‑1 (MQ=255) cTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAaataaata < 1:4001330/149‑1 (MQ=255) ttattattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAataaataa < 1:3072008/149‑1 (MQ=255) ttattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGa < 1:6878215/149‑1 (MQ=255) ttattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGa < 1:54306/149‑1 (MQ=255) ttaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGataa > 1:5571116/1‑149 (MQ=255) ttaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGataa < 1:427082/149‑1 (MQ=255) taATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGATGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGataat > 2:6522307/1‑149 (MQ=255) taATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGataat > 2:2954419/1‑149 (MQ=255) aaTTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGataata > 2:7095314/1‑149 (MQ=255) ttCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAATGATGAAGAGTCT‑G‑GTGAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATaataat > 2:1417800/1‑149 (MQ=255) ttCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATaataat < 2:9491867/149‑1 (MQ=255) ttCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATaataat < 2:5674344/149‑1 (MQ=255) ttttAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCt > 1:8097642/1‑149 (MQ=255) tAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGAt < 2:8196296/149‑1 (MQ=255) aGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATg > 1:84326/1‑149 (MQ=255) tttCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAg < 2:5481178/149‑1 (MQ=255) ttATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTa > 2:881603/1‑149 (MQ=255) aTTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAgg < 1:6293248/149‑1 (MQ=255) tCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGAt > 1:4804201/1‑149 (MQ=255) tCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGAt > 2:10004697/1‑149 (MQ=255) tCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGAt < 1:4647197/149‑1 (MQ=255) tCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGAGACAAATATTTAGGAt > 2:4156425/1‑149 (MQ=255) ttattttatGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTa > 2:2145688/1‑149 (MQ=255) ttattttatGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTa > 2:10291903/1‑149 (MQ=255) tattttatGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTAc > 1:3795325/1‑149 (MQ=255) tattttatGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTAc < 1:7501019/149‑1 (MQ=255) tattttatGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTAc < 2:2379775/149‑1 (MQ=255) ttttatGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACtt > 1:7259413/1‑149 (MQ=255) ttatGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGAAAGATATTTAGGATCTACTTAg > 2:5300104/1‑149 (MQ=255) atGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATACAGATAATAATTCTGATGGGACAGATATTTAGGATATACTTAGAt > 2:8696663/1‑149 (MQ=255) atGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAt > 1:5240564/1‑149 (MQ=255) ggAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGAAAGATATTTAGGATCTACTTAGAttt > 2:6734029/1‑149 (MQ=255) gAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAtttt < 1:10365661/149‑1 (MQ=255) gAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAtttt < 1:1844665/149‑1 (MQ=255) agagACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCt < 1:5725470/149‑1 (MQ=255) agagACGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCt < 1:9210075/149‑1 (MQ=255) gagaCGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTa < 1:1258460/149‑1 (MQ=255) gagaCGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTa < 2:7952503/149‑1 (MQ=255) gaCGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAGTTTCTAAt > 1:6024200/1‑149 (MQ=255) cGTAAAAAGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTa > 1:10018206/1‑149 (MQ=255) aaaaaGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTAAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGa > 2:1964775/1‑149 (MQ=255) aaaaGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGat < 2:3165991/149‑1 (MQ=255) aaaaGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGat > 1:2296760/1‑149 (MQ=255) aaaGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGatt < 2:1659633/149‑1 (MQ=255) aGGAAGAAGAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATCTAGGATCTACTTAGATTTTCTAATTATGattat < 2:6067254/149‑1 (MQ=255) aagaagAGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTa > 2:10153727/1‑149 (MQ=255) aagaGGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGt < 2:1052904/149‑1 (MQ=255) agagGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGtt > 1:9790816/1‑149 (MQ=255) agagGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGtt < 1:1450715/149‑1 (MQ=255) gagGCTGG‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGttt > 1:7647449/1‑149 (MQ=255) | CAAGTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑G‑G‑GAAGAAGAGTAA‑GATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGTTTA > AM406671/894476‑894767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |