| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 549,527 | (T)6→7 | intergenic (‑197/‑190) | tnp905 ← / → tdk | transposase for insertion sequence element IS905B/Tdk protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 549,521 | 1 | . | T | 97.9% | 4490.1 / 58.6 | 1164 | intergenic (‑191/‑196) | tnp905/tdk | transposase for insertion sequence element IS905B/Tdk protein |
| Reads supporting (aligned to +/- strand): ref base . (7/17); new base T (561/575); total (569/595) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.25e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1290 total aligned reads displayed.
AACGGATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑TTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTTAAATAA > AM406671/549373‑549664 | cGGATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑tt < 2:8410417/149‑1 (MQ=255) cGGATTTATTCCTTTCTGTGTCTACACAACTTACTTCACACTACCAAGAAACGATGATGAAAACTGCATTGAGTAAGAGGCAAGCTTGTAGCTTTTAGATTCATAACTAGTTTATTCAGAAAGAAGAGAAGATGAAAAATCGATGCC‑tt > 2:949576/1‑149 (MQ=255) gATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑tttt < 1:3175130/149‑1 (MQ=255) aTTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑ttttt > 2:6377695/1‑149 (MQ=255) tATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTTTTTTTTTTTTTTTTTTATTCAGAAAGTATATTAGATGTAAATTTGATGCC‑tttttttt > 2:6777567/1‑147 (MQ=25) ccTTTTTGTGTTTACACAACTTATTTTACACTACCAAGATGATATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGTTTCATAACTAGTTTATTCAGAAAGAATATAAGATGAGAAATCGAAGCC‑ttatttttcatt > 2:275182/1‑143 (MQ=38) tttGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAgg < 1:887517/149‑1 (MQ=255) ttGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGa > 1:3375692/1‑149 (MQ=255) ttaaaaaaCTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATAAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAAt < 2:7300116/143‑1 (MQ=255) ttACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAAt > 1:1350088/1‑149 (MQ=255) tACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAAtc < 2:1361162/149‑1 (MQ=255) tACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAAtc > 2:3040838/1‑149 (MQ=255) cacaACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAAtctc > 1:8538886/1‑149 (MQ=255) acaACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTTTTGTATGGATATAATctct > 2:6528143/1‑149 (MQ=255) caACTTATTTTAAACTACCAATAAAAGATGATGAAAATTGAATTGAGTAAGATGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGTAAAATAGATGCCTTTTTTTGAAGTATGAATAAAATCTCtt < 2:8587406/149‑1 (MQ=255) aaCTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTa < 1:7347784/149‑1 (MQ=255) aaCTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTa > 1:4569846/1‑149 (MQ=255) tttATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAAAATAAGAAAAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAg < 2:7422707/148‑1 (MQ=255) tATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATATCTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGAt > 1:6370368/1‑149 (MQ=255) tACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGt < 2:7665689/149‑1 (MQ=255) tACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGt < 2:1806462/149‑1 (MQ=255) tACACTACCAAGAAAAGATGATGAAAATGGAATTGAGTAAGAGGAAAGCTTGGAGTTTTTAGATTCATAACTAGTGTATTCAGAAAGAATATAAGAGGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCGCTTAAGATTCGGt < 2:7898911/149‑1 (MQ=255) cacTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATCAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAATTCTCTTAAGATTCGGTAg > 1:5426827/1‑149 (MQ=255) acTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGTTAGa > 2:4833308/1‑149 (MQ=255) acTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGa < 2:2377871/149‑1 (MQ=255) cTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGaa < 1:490823/149‑1 (MQ=255) cTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGaa < 1:4369856/149‑1 (MQ=255) cTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGaa > 2:3807926/1‑149 (MQ=255) tACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAAt < 2:5171792/149‑1 (MQ=255) tACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAAt > 1:389423/1‑149 (MQ=255) ccAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCa < 1:8108407/149‑1 (MQ=255) cAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAg > 2:361108/1‑149 (MQ=255) aaGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAgg > 1:7492628/1‑149 (MQ=255) aGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGa > 2:4267533/1‑149 (MQ=255) aGAAAAGATGATGAAAATTGAATTAAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGa < 2:4040917/149‑1 (MQ=255) gAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGAt < 2:150175/149‑1 (MQ=255) gatgatGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAggaggagga > 1:5933559/1‑149 (MQ=255) atgatgAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGaa > 1:10170899/1‑149 (MQ=255) atgaAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGtt < 1:7947351/149‑1 (MQ=255) atgaAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGtt > 1:5305940/1‑149 (MQ=255) tgaAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGttt < 1:2406927/149‑1 (MQ=255) aaaaTTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGttttt > 2:7000003/1‑149 (MQ=255) aaaTTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTa > 1:3818133/1‑149 (MQ=255) aattgaattgAGTAAGAGGAAAGCTTGTAGTTTTTATTTTTTTTACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTaa > 2:9017292/1‑149 (MQ=255) aattgaattgAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGTAGTAAGGTTATAATCTCTTAAGATACGGTAGAATCAGGATGAGGAAGTTTTTaa > 2:2226917/1‑149 (MQ=255) ttgaattgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGt < 2:8219767/149‑1 (MQ=255) aattgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTaaa > 1:10344472/1‑149 (MQ=255) ttgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAAc > 1:773917/1‑149 (MQ=255) ttgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAAc > 2:4453961/1‑149 (MQ=255) agagGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTa < 2:1935952/149‑1 (MQ=255) gagGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTAc > 1:9839189/1‑149 (MQ=255) agGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAATTAAGTATAAAATATCTTAAGTTTTGGTATAATCAGGATGAGGAAGTTCTTAAGTAAAAGTAGCTTACt > 2:10053901/1‑149 (MQ=255) ggAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTc < 1:1873986/149‑1 (MQ=255) gAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTcc < 1:2672038/149‑1 (MQ=255) gAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTcc > 2:2942629/1‑149 (MQ=255) aaGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCaa < 2:10226316/149‑1 (MQ=255) aaGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCaa < 2:1157394/149‑1 (MQ=255) aGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCaaa < 1:2233351/149‑1 (MQ=255) tGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAaataat < 2:9808941/149‑1 (MQ=255) tGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAaataat > 1:9065839/1‑149 (MQ=255) tttttAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTa < 2:3233993/149‑1 (MQ=255) ttttAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTAt > 1:5727916/1‑149 (MQ=255) tAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGa > 2:3895995/1‑149 (MQ=255) cATAACTAGTTTATTCAGAAAGAATATACGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGAt < 1:7212942/149‑1 (MQ=255) cATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGAt < 2:1647731/149‑1 (MQ=255) aTAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGAtt > 1:8369425/1‑149 (MQ=255) aTAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGAtt < 1:2913040/149‑1 (MQ=255) aCTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGATGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTtg < 1:7005295/149‑1 (MQ=255) aCTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTtg < 1:6565219/149‑1 (MQ=255) aGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGa < 1:106430/149‑1 (MQ=255) aGTTTATTCAGAAAGAATAGAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGa < 1:5131738/149‑1 (MQ=255) gTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGaa < 2:8788676/149‑1 (MQ=255) tttATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAAt < 2:3466605/149‑1 (MQ=255) tttATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAAt < 1:7835421/149‑1 (MQ=255) tttATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAAt < 2:2526339/149‑1 (MQ=255) tttATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAAt < 2:5801624/149‑1 (MQ=255) tttATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAAt < 2:6036053/149‑1 (MQ=255) ttATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAAtt < 2:927040/149‑1 (MQ=255) aTTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTg < 1:681845/149‑1 (MQ=255) tCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGaa < 1:1785129/149‑1 (MQ=255) tCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGaa > 2:5545498/1‑149 (MQ=255) cAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGaaa < 1:961779/149‑1 (MQ=255) agaaagaaTATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAg < 1:4096073/149‑1 (MQ=255) gaaTATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAatat > 1:4722667/1‑149 (MQ=255) gaaTATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAatat > 1:8691635/1‑149 (MQ=255) atatAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACGCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAatatat < 2:5347762/149‑1 (MQ=255) tataAGATGAAAAATAGATGCCTTTTTTTTTTTTTTTTATAAAATCACTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGAAAAGATTTTGTGTATTTGAAAGAATATAtt > 2:6204333/1‑149 (MQ=255) ataAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATAttt < 1:3041774/149‑1 (MQ=255) ataAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATAttt < 1:6702154/149‑1 (MQ=255) taAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTa < 1:3553906/149‑1 (MQ=255) taAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTa > 1:764845/1‑149 (MQ=255) gAAAAATAGATGCCTTTTTTTGTATTATTGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAAtt > 2:3367318/1‑149 (MQ=255) aaaaTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAAtttt > 1:5599992/1‑149 (MQ=255) aaaTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAACACTAGCTTACTCCAAATAATTTTTATGGTTAAGATTTTGTGAATTTGAACGAATATATTTAAGTAttttt > 2:8054711/1‑149 (MQ=255) aaaTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAAttttt > 1:10014134/1‑149 (MQ=255) aaTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTta < 1:6083282/149‑1 (MQ=255) aTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTtaa < 1:150648/149‑1 (MQ=255) tAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAATACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTtaaa > 2:10392411/1‑149 (MQ=255) aGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGAAGAGGAAGTTTTTAAGTAAAACTAGCTAACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTtaaat < 2:4619969/149‑1 (MQ=255) aTGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTtaaataa > 1:9326803/1‑149 (MQ=255) | AACGGATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑TTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTTAAATAA > AM406671/549373‑549664 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |