Predicted mutation
evidence seq id position mutation annotation gene description
RA AM406671 589,181 +C intergenic (+35/+231) llmg_0600 → / ← llmg_0601 glycosyl transferase/putative secreted protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM406671589,1801.C96.7% 4258.8 / 105.8 1152intergenic (+34/+232)llmg_0600/llmg_0601glycosyl transferase/putative secreted protein
Reads supporting (aligned to +/- strand):  ref base . (18/20);  new base C (627/477);  total (650/502)
Fisher's exact test for biased strand distribution p-value = 3.18e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1178 total aligned reads displayed.

GGATTGCAATTGCTCTCAATCGGAATTATTGGAAAATATATCGCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTCTACTATTATAAAGTTCATTTT  >  AM406671/589033‑589323
                                                                                                                                                    |                                                                                                                                                
ggaTTGCAATTGCTCTCAATCGGAATTATTGGAAAATATATCGCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGc                                                                                                                                                 >  2:8759931/1‑149 (MQ=255)
           gCTCTCAATCGGAATTATTGGAAAATATATCGCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGc                                                                                                                                      <  1:2454383/149‑1 (MQ=255)
              ctcAATCGGAATTATTGGAAAATATATCGCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTgg                                                                                                                                   >  2:9808981/1‑149 (MQ=255)
               tcAATCGGAATTATTGGAAAATATATCGCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGc                                                                                                                                  >  2:3110011/1‑149 (MQ=255)
               tcAATCGGAATTATTGGAAAATATATCGCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGc                                                                                                                                  >  1:8625611/1‑149 (MQ=255)
               tcAATCGGAATTATTGGAAAATATATCGCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCAAGCTATTACCTGGc                                                                                                                                  >  1:8249820/1‑149 (MQ=255)
               tcAATCGGAATTATTGGAAAATATATCGCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGATGCCAGCTATTAGCTGGc                                                                                                                                  >  1:7926948/1‑149 (MQ=255)
                 aaTCGGAATTATTGGAAAATATATCGCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCAt                                                                                                                                <  1:125537/149‑1 (MQ=255)
                       aaTTATTGGAAAATATATCGCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTAtt                                                                                                                          <  1:1990560/149‑1 (MQ=255)
                         ttattGGAAAATATATCGCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTAtttt                                                                                                                        >  1:4282615/1‑148 (MQ=255)
                          tattGGAAAATATATCGCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTtgt                                                                                                                       >  1:4798059/1‑149 (MQ=255)
                           attGGAAAATAGATCGCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAAGATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTtgtg                                                                                                                      <  2:742039/149‑1 (MQ=255)
                                    tatatCGCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAAtttt                                                                                                             >  2:4447727/1‑149 (MQ=255)
                                       atCGCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTtgtg                                                                                                          >  2:8602461/1‑149 (MQ=255)
                                         cGCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTAGAACTGATTATATGTTATAATTAAAGTCTTAAACATGGTTGCCATCTATTAGCTGTCATTTTATTTGTCTCAAATTTtgtgta                                                                                                        >  2:7790737/1‑147 (MQ=255)
                                          gacAATATATTACTAAAAACAAAAAAAAGGCCTAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCa                                                                                                       <  2:5030216/147‑1 (MQ=255)
                                          gCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCa                                                                                                       <  1:9025893/149‑1 (MQ=255)
                                             aaGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAAGTGATTATCTGTTATAATAAAAGTCTTAAACATGCGTGCCAGCTATTAGCTGACATTTTATTTGTGCCAAATTTTGTGCCaaaa                                                                                                    >  2:6554827/1‑149 (MQ=255)
                                               gATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCaaaaaa                                                                                                  <  1:6906949/149‑1 (MQ=255)
                                                 tatTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAAt                                                                                                >  2:8185640/1‑149 (MQ=255)
                                                   ttCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCa                                                                                              >  2:1996288/1‑149 (MQ=255)
                                                    tCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCaa                                                                                             >  2:3981884/1‑149 (MQ=255)
                                                     ccTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCaaa                                                                                            >  1:6460935/1‑149 (MQ=255)
                                                     ccTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCaaa                                                                                            <  1:8773015/149‑1 (MQ=255)
                                                      cTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCaaaa                                                                                           <  1:3789550/149‑1 (MQ=255)
                                                           aaCAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGc                                                                                      >  2:9448276/1‑149 (MQ=255)
                                                           aaCAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGc                                                                                      >  2:2909644/1‑149 (MQ=255)
                                                           aaCAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGc                                                                                      >  2:1511315/1‑149 (MQ=255)
                                                            aCAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCt                                                                                     >  2:9651722/1‑149 (MQ=255)
                                                            aCAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCt                                                                                     >  1:1340399/1‑149 (MQ=255)
                                                            aCAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTACTAGCTGGCATTTTATTTGTACCAATTTTTGTGCCAAAAAAATCAAAAACTGCt                                                                                     <  2:6082709/149‑1 (MQ=255)
                                                              aaaaaaaaGGCCCGATTATCTTATTAAGGAAAGCAATATAAAGTCGAACTGGTTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCtat                                                                                   <  1:5114531/149‑1 (MQ=255)
                                                              aaaaaaaaGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCtat                                                                                   >  2:7604649/1‑149 (MQ=255)
                                                               aaaaaaaGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCtata                                                                                  >  1:9323474/1‑149 (MQ=255)
                                                                aaaaaaGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCtatat                                                                                 >  2:3862613/1‑149 (MQ=255)
                                                                 aaaaaGGCCCAATTAGATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCtatata                                                                                <  2:3355679/149‑1 (MQ=255)
                                                                   aaaGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACt                                                                              >  1:2338113/1‑149 (MQ=255)
                                                                     aGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTaa                                                                            <  1:7259164/149‑1 (MQ=255)
                                                                            attatattatTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTAtt                                                                     >  1:10364690/1‑149 (MQ=255)
                                                                              tatattatTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTa                                                                   <  1:812078/149‑1 (MQ=255)
                                                                              tatattatTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTa                                                                   >  2:10048951/1‑149 (MQ=255)
                                                                               atattatTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGAATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTaa                                                                  <  2:6970300/149‑1 (MQ=255)
                                                                                tattatTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTaaa                                                                 >  2:6300661/1‑149 (MQ=255)
                                                                                tattatTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTaaa                                                                 <  1:10023583/149‑1 (MQ=255)
                                                                                 attattAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAAc                                                                >  2:7227051/1‑149 (MQ=255)
                                                                                   tattaAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTCTTCGCTGGCATTTTATTTGTGCCAAATTCTGTGCCAAAAAACTCAACAACTGCTCTATACTCAAAGTATTTAAACgc                                                              >  1:284536/1‑148 (MQ=255)
                                                                                   tattaAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTACCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGa                                                              <  2:3488963/149‑1 (MQ=255)
                                                                                    attaAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGAc                                                             >  2:2727265/1‑149 (MQ=255)
                                                                                     ttaAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACt                                                            >  2:4669489/1‑149 (MQ=255)
                                                                                     ttaAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACt                                                            >  1:10183503/1‑149 (MQ=255)
                                                                                       aaGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCa                                                          >  1:1766252/1‑149 (MQ=255)
                                                                                         ggAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCaaa                                                        <  1:9711143/149‑1 (MQ=255)
                                                                                         ggAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCaaa                                                        <  1:3237622/149‑1 (MQ=255)
                                                                                             aGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTAc                                                    >  2:9254057/1‑149 (MQ=255)
                                                                                             aGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTAc                                                    >  1:678454/1‑149 (MQ=255)
                                                                                              gCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACa                                                   >  1:4046380/1‑149 (MQ=255)
                                                                                                 atatAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACaaaa                                                >  1:5538557/1‑149 (MQ=255)
                                                                                                  tataAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGATATATACTAAAAGTATTTAAACGACTCAAACTACaaaaa                                               >  1:7517469/1‑149 (MQ=255)
                                                                                                   ataAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACaaaaaa                                              <  1:5689464/149‑1 (MQ=255)
                                                                                                   ataAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACaaaaaa                                              <  1:6102219/149‑1 (MQ=255)
                                                                                                    taAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACaaaaaaa                                             >  1:2171340/1‑148 (MQ=255)
                                                                                                     aaaGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATa                                            >  1:546516/1‑149 (MQ=255)
                                                                                                     aaaGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATa                                            >  1:9173368/1‑149 (MQ=255)
                                                                                                       aGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGc                                          >  1:2665967/1‑149 (MQ=255)
                                                                                                         tCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTa                                        <  2:1761567/149‑1 (MQ=255)
                                                                                                           gAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTAtt                                      <  1:7412777/149‑1 (MQ=255)
                                                                                                             aCTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTAtttt                                    >  1:7707786/1‑149 (MQ=255)
                                                                                                               tGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTtat                                  >  2:2278526/1‑149 (MQ=255)
                                                                                                                gATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGANTCAAACTACAAAAAATAGCTATTTtata                                 <  1:5804853/149‑1 (MQ=255)
                                                                                                                gATTATATGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTtata                                 >  1:3624878/1‑149 (MQ=255)
                                                                                                                   tttatGTTATAATAAAAGTCTTAAACATGTGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATc                              <  2:10437499/147‑1 (MQ=255)
                                                                                                                   tataTGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATc                              >  1:4971866/1‑149 (MQ=255)
                                                                                                                   tataTGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATc                              <  1:8934966/149‑1 (MQ=255)
                                                                                                                    atatGTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCt                             >  1:4580313/1‑149 (MQ=255)
                                                                                                                       ggTTATAATAAAAGTTTTAACCATGGGTGACAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGaa                          <  2:2467424/148‑1 (MQ=255)
                                                                                                                        gTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAACGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTGATAATCTGAAt                         >  2:1233418/1‑149 (MQ=255)
                                                                                                                        gTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAAt                         >  2:2071114/1‑149 (MQ=255)
                                                                                                                        gTTATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAAt                         >  2:5920455/1‑149 (MQ=255)
                                                                                                                         ttATACTCAAAGTCTTAAACATGAGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAACAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAAtt                        >  2:546358/1‑149 (MQ=255)
                                                                                                                         ttATAATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAAtt                        <  2:5614338/149‑1 (MQ=255)
                                                                                                                          tataATAAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTc                       >  2:8983559/1‑149 (MQ=255)
                                                                                                                           ataataAAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTct                      >  1:3518402/1‑149 (MQ=255)
                                                                                                                            taataaAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTcta                     >  2:138961/1‑149 (MQ=255)
                                                                                                                             aataaAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTctac                    >  1:1089493/1‑149 (MQ=255)
                                                                                                                             aataaAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTctac                    >  1:1507944/1‑149 (MQ=255)
                                                                                                                             aataaAAGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTctac                    >  1:9509998/1‑149 (MQ=255)
                                                                                                                                aaaaGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACCAAAAATAGCTCTTTTTTAATCTGAATTCTCCtat                 >  2:8444431/1‑149 (MQ=255)
                                                                                                                                aaaaGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTCTACtat                 <  1:8455875/149‑1 (MQ=255)
                                                                                                                                aaaaGTCTTAAACATGGGTGCCAGATATTAGCTGGCATTTTATTTGTGCAAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTCTACtat                 <  2:9151705/149‑1 (MQ=255)
                                                                                                                                   aGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTCTACtattat              >  2:6744768/1‑149 (MQ=255)
                                                                                                                                   aGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTCTACtattat              >  2:5202390/1‑149 (MQ=255)
                                                                                                                                   aGTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGACAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAAATAAAAAAAATAGCTATTTTATAATCTGAATTCTACtattat              <  2:4125757/149‑1 (MQ=255)
                                                                                                                                    gTCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTCTACTATtata             >  1:9824923/1‑149 (MQ=255)
                                                                                                                                     tCTTAAACATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTCTACTATTATaa            <  2:80076/149‑1 (MQ=255)
                                                                                                                                          aaCATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTCTACTATTATAAAGTTc       >  1:6208373/1‑149 (MQ=255)
                                                                                                                                           aCATGGGTGCCAGCTGTTAGCTGGCATTTTATCTGTGCCAAATTTTGTGCCAAAAACATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTCTACTATTATAACGTTCa      >  2:3689866/1‑149 (MQ=255)
                                                                                                                                           aCATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTCTACTATTATAAAGTTCa      <  1:2906812/149‑1 (MQ=255)
                                                                                                                                            cATGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACGCAAACTACAAAAAATAGCTATTTTATAATCTGAATTCTACTATTATAAAGTTCAt     <  1:5307864/149‑1 (MQ=255)
                                                                                                                                             aTGGGTGCCAGCTAATAGATGGCATTTTATTTGTGCCAAAATATGTAAAAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTCTACTATTATAAAGTTCAtt    <  2:4894764/149‑1 (MQ=255)
                                                                                                                                              tGGGTGCCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTCTACTATTATAAAGTTCAttt   <  1:305402/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                
GGATTGCAATTGCTCTCAATCGGAATTATTGGAAAATATATCGCCAAGATATTCCTTGAAACAAAAAAAAGGCCCAATTATATTATTAAGGAAAGCAATATAAAGTCGAACTGATTATATGTTATAATAAAAGTCTTAAACATGGGTGCAGCTATTAGCTGGCATTTTATTTGTGCCAAATTTTGTGCCAAAAAAATCAAAAACTGCTATATACTAAAAGTATTTAAACGACTCAAACTACAAAAAATAGCTATTTTATAATCTGAATTCTACTATTATAAAGTTCATTTT  >  AM406671/589033‑589323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: