| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 2,112,674 | +T | intergenic (‑79/+54) | llmg_2151 ← / ← llmg_2152 | Hypothetical protein ycaQ/Hypothetical protein ycaQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 2,112,670 | 1 | . | T | 98.0% | 4575.1 / 55.1 | 1179 | intergenic (‑75/+58) | llmg_2151/llmg_2152 | Hypothetical protein ycaQ/Hypothetical protein ycaQ |
| Reads supporting (aligned to +/- strand): ref base . (12/11); new base T (521/633); total (534/645) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.32e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1286 total aligned reads displayed.
TTTTGCCGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑T‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACAAAGAT > AM406671/2112522‑2112813 | ttttGCCGTCCATTTTTATGATGAATAATCCGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCCCGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTc > 1:712976/1‑149 (MQ=255)ttttGCCGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTc > 2:5008876/1‑149 (MQ=255)tttgGCCGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCAAGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATATAAAGAAAAAATATATTc < 2:10370024/149‑1 (MQ=255) ttGCCGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑t‑t < 1:9840223/149‑1 (MQ=255) ttGCCGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑t‑t < 1:4147298/149‑1 (MQ=255) gCCGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑t‑t‑tt < 2:7261125/149‑1 (MQ=255) gCCGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAAAAAAAAAAAAAAATATATTC‑t‑t‑tt < 2:9174986/149‑1 (MQ=255) ccGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑t‑t‑ttt < 2:5198875/149‑2 (MQ=255) cGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑t‑t‑tttc < 1:1707616/149‑3 (MQ=255) cGTCCATTTTAATGATGAATAATCAGCACACCTTTAAAAGACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGAACCCCAATCCCAAAGCAAATTTCCACTTTCCAAATGACGAAAATCTTTGGCAAAAATATATTC‑t‑t‑tttc < 2:2997776/149‑3 (MQ=255) tttttATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCagagag < 2:8095924/149‑1 (MQ=255) tttttATGATGAATAATCAGCTAACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGAAAAAAAAAAAAAAAAATATATTCTT‑T‑TTCagagag < 2:5773841/149‑1 (MQ=255) ttttATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGt < 1:7466455/149‑1 (MQ=255) ttttATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTAAGAGAGt > 2:1350952/1‑149 (MQ=255) tttATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTa < 1:4616686/149‑1 (MQ=255) ttATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTAt > 2:3450356/1‑149 (MQ=255) tATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTAtt > 1:7676102/1‑149 (MQ=255) atgatgAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTAttt < 1:5146328/149‑1 (MQ=255) tgatgaATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTAtttt > 1:2260781/1‑149 (MQ=255) gatgaATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTAttttt < 1:3623461/149‑1 (MQ=255) gatgaATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTAttttt < 1:8361479/149‑1 (MQ=255) atgaATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTc < 1:9948347/149‑1 (MQ=255) atgaATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTc < 2:1592272/149‑1 (MQ=255) atgaATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTc > 1:5605857/1‑149 (MQ=255) tgaATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCt < 1:317765/149‑1 (MQ=255) gaATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTg < 2:4148612/149‑1 (MQ=255) aataatCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGCGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGGGAGTATTTTTCTGa > 2:4795982/1‑149 (MQ=255) aataatCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGa < 1:3780149/149‑1 (MQ=255) ataatCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGAt > 2:1725034/1‑149 (MQ=255) atCAGCTCACCTTTAAAATACATGGTTTCAAGCGAGGCTCTTGCCACGGATGAAGAGGCACCCCAAACCCAAATCAAATTTCCACTTTCCAAATGACGCAAAAAAAAAAAAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTc < 2:5398850/149‑1 (MQ=255) cTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTAtttt < 2:4536004/135‑1 (MQ=255) cTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAatca > 1:2085708/1‑149 (MQ=255) aaTACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGa > 2:4354596/1‑149 (MQ=255) aaTACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGa > 1:7960121/1‑149 (MQ=255) gTTTCAAGCGCGGCTCTTGCCACGGATGGAGAGGCACCCCAATCCCAAATCAACTTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCAGCATTTGTAGAACAGGTTc > 2:6107648/1‑149 (MQ=255) gTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTc < 2:7097984/149‑1 (MQ=255) tttCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCa < 1:5979517/149‑1 (MQ=255) tttCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCa > 1:8739629/1‑149 (MQ=255) cAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCATTAACAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACtt < 2:8768923/149‑1 (MQ=255) aaGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACttt > 2:9480259/1‑149 (MQ=255) aaGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACttt > 1:4009974/1‑149 (MQ=255) cgcgGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAGATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTc < 1:1262678/149‑1 (MQ=255) cgcgGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTc < 2:3633153/149‑1 (MQ=255) cgcgGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTc < 2:83354/149‑1 (MQ=255) cgGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTa > 2:8566314/1‑149 (MQ=255) gCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTAcg < 2:2812491/149‑1 (MQ=255) ctctTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTAcgc > 2:1208395/1‑149 (MQ=255) ttGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGcc > 1:6951116/1‑149 (MQ=255) ttGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGcc < 1:1921527/149‑1 (MQ=255) ttGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGcc > 1:1488540/1‑149 (MQ=255) tGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCa < 2:9612952/149‑1 (MQ=255) aCGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGc < 1:8096542/149‑1 (MQ=255) cagATGAAGAAGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAAAAAAAAAAAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCt < 2:6722295/147‑1 (MQ=255) aTGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCt > 2:5587488/1‑149 (MQ=255) gCACTCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCATTTTGTCTACGCGCCATTGCTTCTGAATAGCt > 2:10042952/1‑149 (MQ=255) cccAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGAtt < 1:8965224/149‑1 (MQ=255) cccAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGAtt < 1:5402656/149‑1 (MQ=255) cccAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGAtt > 2:7928455/1‑149 (MQ=255) ccAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTc < 1:971157/149‑1 (MQ=255) ccAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTc < 2:10161651/149‑1 (MQ=255) cAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTcc > 1:9284079/1‑149 (MQ=255) cAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTcc < 1:1106697/149‑1 (MQ=255) aaTCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTccc > 1:10194385/1‑149 (MQ=255) aaTCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTccc < 1:9546718/149‑1 (MQ=255) aaTCCCAAATCAAATTTCCACTTTCCAAATGACGCAAACCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTccc < 1:6438118/149‑1 (MQ=255) tCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTTTTTTATTTTTTTTCTGAAGTCAATCATCATTTGTATAACAGGTTCACTTTGTTTACGCGCCATTGCTTCTGCATCGCTGATTCCCGc > 2:3740792/1‑149 (MQ=255) tCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGc < 1:2993523/149‑1 (MQ=255) cccAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCa < 2:2616004/149‑1 (MQ=255) aatTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGa < 1:2755178/149‑1 (MQ=255) aatTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGa > 2:694950/1‑149 (MQ=255) ttCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGt > 2:630653/1‑149 (MQ=255) tCCACTTTCCAAATGACGCAAATCTTTGNCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTa > 1:5794658/1‑149 (MQ=255) cACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTaaa < 1:8568540/149‑1 (MQ=255) attttCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑TGT‑TGCAGAGAGTATTTTTCTGCTTTCAATCATCGTTTGTAGAACCGGTTCACTTTATCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTaaaa < 2:7569517/147‑1 (MQ=255) cTTTCCAAATGCCTCAAATCTTTAGCAAAAATATATTGTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTaaaaa < 2:6486854/149‑1 (MQ=255) ttCCAAATGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACt < 2:8954328/149‑1 (MQ=255) aTGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCaaa < 1:6107648/149‑1 (MQ=255) tGACGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAAt > 1:9150794/1‑149 (MQ=255) accgaaaaTCTTTGGGATAAATATATGC‑T‑TCTTCAGAGAGTATATTTCTTATTGCAATAATCATTTGTAGAACAGGTTCACTTTGGCGACGTTGCATTGCGTCTGCATAACTGGTTCCCGCATATTTGCGAAGTAAAAACTGTCaaaac < 2:2296304/144‑3 (MQ=255) cGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAAtctt < 2:1943309/149‑1 (MQ=255) cGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAAtctt > 2:9255689/1‑149 (MQ=255) cGCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACGTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAAtctt < 1:1380782/149‑1 (MQ=255) gCAAATCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAAtcttc > 1:6576374/1‑149 (MQ=255) aaaaTATTAGGAAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAAtcttct < 2:9811501/148‑1 (MQ=255) aTCTTTGGCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTAtt < 2:3956251/149‑1 (MQ=255) ggCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCaaa < 1:10002991/149‑1 (MQ=255) gCAAAAATATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCaaaa < 1:6766936/149‑1 (MQ=255) aaaaTATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATAc > 1:9427518/1‑149 (MQ=255) aaaTGTATTG‑T‑TATTTAGAGAGTATTTTTCTGATTTCAATCATCCTTTCTAGAGCACGTTCACTTTGTCTACGTGCCATTGCTTATGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACa < 2:2452247/149‑1 (MQ=255) aaaTATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACa < 1:4770811/149‑1 (MQ=255) aaaTATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACa > 1:2520151/1‑149 (MQ=255) aaaTATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTAAATAATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAATTCTTCTATTGGCAAAATACa > 2:2159824/1‑149 (MQ=255) aaTATATTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACaa > 1:4332739/1‑149 (MQ=255) atatatTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACaaa > 1:4938235/1‑149 (MQ=255) atatatTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACaaa > 1:3384092/1‑149 (MQ=255) tatatTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACAAAg < 1:7253514/149‑1 (MQ=255) ttatTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACAAAGa < 2:3325988/148‑1 (MQ=255) atatTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACAAAGa < 2:3150003/149‑1 (MQ=255) tatTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACAAAGAt < 1:6250782/149‑1 (MQ=255) tatTCTT‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACAAAGAt < 1:10347447/149‑1 (MQ=255) | TTTTGCCGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑T‑T‑TTCAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACAAAGAT > AM406671/2112522‑2112813 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |