Predicted mutation
evidence seq id position mutation annotation gene description
RA AM406671 1,532,424 G→C P159R (CCC→CGC)  llmg_1560 ← stress induced DNA binding protein (putative)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM4066711,532,4240GC100.0% 3920.4 / NA 953P159R (CCC→CGC) llmg_1560stress induced DNA binding protein (putative)
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (444/509);  total (444/509)

Only 100 of 954 total aligned reads displayed.

AGCAAGCTCGTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGGGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATCAATGCTTCATC  >  AM406671/1532278‑1532572
                                                                                                                                                  |                                                                                                                                                    
aGCAAGCTCGTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGa                                                                                                                                                    <  2:8212269/149‑1 (MQ=255)
aGCAAGCTCGTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGa                                                                                                                                                    >  2:8081998/1‑149 (MQ=255)
  cAAGCTCGTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGaat                                                                                                                                                  <  1:6754889/149‑1 (MQ=255)
   aaGCTCGTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGaata                                                                                                                                                 <  2:242245/149‑1 (MQ=255)
     gCTCGTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGaataat                                                                                                                                               >  2:9105512/1‑149 (MQ=255)
     gCTCGTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGaataat                                                                                                                                               <  1:4427973/149‑1 (MQ=255)
         gTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGAc                                                                                                                                           <  2:9258064/149‑1 (MQ=255)
         gTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGAc                                                                                                                                           <  2:892784/149‑1 (MQ=255)
          tCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACa                                                                                                                                          >  1:7637941/1‑149 (MQ=255)
          tCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACa                                                                                                                                          <  1:4867371/149‑1 (MQ=255)
              gACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAAtt                                                                                                                                      <  1:9742996/149‑1 (MQ=255)
                cTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCTCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATtat                                                                                                                                    <  1:7015944/149‑1 (MQ=255)
                cTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATtat                                                                                                                                    >  2:4091531/1‑149 (MQ=255)
                       cAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTACTCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTa                                                                                                                             <  1:7759946/149‑1 (MQ=255)
                          aaaaaaGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAg                                                                                                                          >  2:8447213/1‑149 (MQ=255)
                             aaaGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCtt                                                                                                                       >  1:1948209/1‑149 (MQ=255)
                              aaGTGTGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTg                                                                                                                      <  2:2768647/149‑1 (MQ=255)
                               aGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGc                                                                                                                     >  2:8718648/1‑149 (MQ=255)
                                  gggACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGaa                                                                                                                  <  1:1294121/149‑1 (MQ=255)
                                   ggACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAAt                                                                                                                 <  1:8909983/149‑1 (MQ=255)
                                          cTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGt                                                                                                          <  2:5083876/149‑1 (MQ=255)
                                          cTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGt                                                                                                          >  2:7006981/1‑149 (MQ=255)
                                           tGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGtt                                                                                                         <  2:1523921/149‑1 (MQ=255)
                                            ggATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTc                                                                                                        >  1:2927822/1‑149 (MQ=255)
                                             gATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCt                                                                                                       >  1:6336537/1‑149 (MQ=255)
                                                aCAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAg                                                                                                    >  1:5409072/1‑149 (MQ=255)
                                                  aaTGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCt                                                                                                  <  1:8071428/149‑1 (MQ=255)
                                                     ggtggtCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTaaa                                                                                               <  2:5546131/149‑1 (MQ=255)
                                                     ggtggtCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTaaa                                                                                               >  2:627731/1‑149 (MQ=255)
                                                     ggtggtCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTaaa                                                                                               <  1:4312397/149‑1 (MQ=255)
                                                      gtggtCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAAt                                                                                              <  1:529120/149‑1 (MQ=255)
                                                            aCTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTttct                                                                                        >  1:144873/1‑149 (MQ=255)
                                                            aCTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTttct                                                                                        <  2:3289795/149‑1 (MQ=255)
                                                             cTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTttctt                                                                                       >  1:4680616/1‑149 (MQ=255)
                                                             cTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTttatt                                                                                       >  1:3075561/1‑149 (MQ=255)
                                                                      tcatcaAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTgcg                                                                              <  2:2108062/149‑1 (MQ=255)
                                                                      tcatcaAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTgcg                                                                              <  2:1025361/149‑1 (MQ=255)
                                                                        atcaAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCt                                                                            >  1:4152568/1‑149 (MQ=255)
                                                                            aaaTCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGtt                                                                        >  1:9232640/1‑149 (MQ=255)
                                                                                cTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAAt                                                                    <  2:9776022/149‑1 (MQ=255)
                                                                                 tttAATCTTCATCTTCCTAGTCAATAAATTCGCCTATCGTTTTTCAAAGTTCTACTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGATAAATTTTTCTTCCTTTTGCGCTAGTTTAATc                                                                   >  2:1929765/1‑149 (MQ=255)
                                                                                   tAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGc                                                                 <  2:3011601/149‑1 (MQ=255)
                                                                                   tAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGc                                                                 <  2:1800517/149‑1 (MQ=255)
                                                                                   tAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGc                                                                 >  2:7446367/1‑149 (MQ=255)
                                                                                    aaTCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCt                                                                <  1:8768670/149‑1 (MQ=255)
                                                                                     atcttcatcttcCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTc                                                               <  2:4410603/149‑1 (MQ=255)
                                                                                     atcttcatcttcCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTc                                                               >  1:6451830/1‑149 (MQ=255)
                                                                                     atcttcatcttcCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTc                                                               <  2:7129752/149‑1 (MQ=255)
                                                                                       cttcatcttcCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGt                                                             <  1:9553367/149‑1 (MQ=255)
                                                                                        ttcatcttcCTCCTCAATAGATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTc                                                            <  1:10000434/149‑1 (MQ=255)
                                                                                        ttcatcttcCTCCTCAATAAATGCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTc                                                            <  2:5262304/149‑1 (MQ=255)
                                                                                          catcttcCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCg                                                          <  1:8505567/149‑1 (MQ=255)
                                                                                             cttcCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGata                                                       <  2:5740650/149‑1 (MQ=255)
                                                                                             cttcCTCCTCAATAAACTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGata                                                       >  1:371141/1‑149 (MQ=255)
                                                                                              ttcCCCCTCAATAAATTCGCCCATCGTTTTTACAACTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATGGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGataa                                                      <  1:569102/149‑1 (MQ=255)
                                                                                                 ctcctcAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGataaata                                                   >  1:1820666/1‑149 (MQ=255)
                                                                                                   cctcAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAGTAGACAGATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGAtaaataaa                                                 >  2:7615253/1‑149 (MQ=255)
                                                                                                   cctcAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCTTTTTTCGCTAGTTTAATCGCTCGTCCGAtaaataaa                                                 >  2:4902252/1‑149 (MQ=255)
                                                                                                    ctcAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATaaataaat                                                <  1:3540264/149‑1 (MQ=255)
                                                                                                    ctcAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATaaataaat                                                <  1:3871549/149‑1 (MQ=255)
                                                                                                     tcAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAAtt                                               <  1:586529/149‑1 (MQ=255)
                                                                                                       aaTAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAAtttt                                             <  1:9409747/149‑1 (MQ=255)
                                                                                                        aTAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTg                                            <  2:5409072/149‑1 (MQ=255)
                                                                                                           aaTTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCTAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGtt                                         <  2:7229666/149‑1 (MQ=255)
                                                                                                             ttCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATACACAACTTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAACTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATCAATTTTGGTTCt                                       <  2:2565607/149‑1 (MQ=255)
                                                                                                                gCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGaa                                    <  2:3767965/149‑1 (MQ=255)
                                                                                                                 ccTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGaaa                                   >  1:2530647/1‑149 (MQ=255)
                                                                                                                 ccTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGaaa                                   >  1:2712492/1‑149 (MQ=255)
                                                                                                                  cTATCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAAGAATAGACAAATTATAGCCGTAAAGCTTGCGAGTTTCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAACTTTTGGTTCTGaaaa                                  >  2:6007547/1‑149 (MQ=255)
                                                                                                                    aTCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATc                                >  1:7243426/1‑149 (MQ=255)
                                                                                                                     tCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCa                               <  2:6507963/149‑1 (MQ=255)
                                                                                                                     tCGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCa                               <  1:10151845/149‑1 (MQ=255)
                                                                                                                      cGTTTTTCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCAt                              <  2:7998437/149‑1 (MQ=255)
                                                                                                                        tttttCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTGAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTg                            >  2:6856721/1‑149 (MQ=255)
                                                                                                                         ttttCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGa                           <  2:9602484/149‑1 (MQ=255)
                                                                                                                          tttCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGAt                          <  1:6001256/149‑1 (MQ=255)
                                                                                                                            tCCAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATaa                        <  2:6432182/149‑1 (MQ=255)
                                                                                                                              cAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAg                      >  1:2334401/1‑149 (MQ=255)
                                                                                                                              cAAGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAg                      <  1:8180151/149‑1 (MQ=255)
                                                                                                                               aaGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGt                     <  1:7899155/149‑1 (MQ=255)
                                                                                                                               aaGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGt                     >  2:2323360/1‑149 (MQ=255)
                                                                                                                                aGTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGtt                    <  2:3475160/149‑1 (MQ=255)
                                                                                                                                 gTTCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGttt                   >  1:1608424/1‑149 (MQ=255)
                                                                                                                                  ttCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGtttt                  <  1:8359389/149‑1 (MQ=255)
                                                                                                                                  ttCTCCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGtttt                  <  2:7867804/149‑1 (MQ=255)
                                                                                                                                   tctcCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTc                 <  1:2110518/149‑1 (MQ=255)
                                                                                                                                   tctcCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTc                 <  2:4704193/149‑1 (MQ=255)
                                                                                                                                   tctcCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTGCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTc                 >  1:6162022/1‑149 (MQ=255)
                                                                                                                                    ctcCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCt                >  1:10324966/1‑149 (MQ=255)
                                                                                                                                     tcCTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTa               <  1:9928384/149‑1 (MQ=255)
                                                                                                                                      ccTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGt                     >  2:4491161/1‑142 (MQ=255)
                                                                                                                                       cTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATc             <  1:657610/149‑1 (MQ=255)
                                                                                                                                       cTGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATGTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATc             <  2:4285412/149‑1 (MQ=255)
                                                                                                                                        tGCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATCa            <  2:1333011/149‑1 (MQ=255)
                                                                                                                                         gCAAAATAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATCaa           <  1:1105380/149‑1 (MQ=255)
                                                                                                                                          cAAAATAGCGAATAATTGACTAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATCAAt          <  2:1057127/149‑1 (MQ=255)
                                                                                                                                            aaaTAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTTTTCTTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATCAATGc        >  2:93828/1‑149 (MQ=255)
                                                                                                                                            aaaTAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATCAATGc        <  1:4587771/149‑1 (MQ=255)
                                                                                                                                              aTAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATCAATGCtt      <  1:3267875/149‑1 (MQ=255)
                                                                                                                                              aTAGCGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATCAATGCtt      >  1:7420235/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
AGCAAGCTCGTCTGGACTCAAGTCAGAAAAAAGTGGGACTAGCTGGATACAATGGTGGTCACTTAAATGCTCATCAAAATCTTTAATCTTCATCTTCCTCCTCAATAAATTCGCCTATCGTTTTTCCAAGTTCTCCTGCAAAATAGGGAATAATAGACAAATTATAGCCGTAAAGCTTGCGAATTGCAAGTTCTAAGCTAAATTTTTCTTCCTTTTGCGCTAGTTTAATCGCTCGTCCGATAAATAAATTTTGGTTCTGAAAATCATTGATAAAGTTTTCTATCAATGCTTCATC  >  AM406671/1532278‑1532572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑