| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,572,258 | G→A | intergenic (+56/+181) | llmg_1598 → / ← deoD | putative secreted protein/DeoD protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,572,258 | 0 | G | A | 99.9% | 3603.3 / NA | 915 | intergenic (+56/+181) | llmg_1598/deoD | putative secreted protein/DeoD protein |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (465/448); total (465/450) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 917 total aligned reads displayed.
TCTTGGACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAATAGAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGATTGAGA > AM406671/1572113‑1572399 | tCTTGGACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGc < 1:897654/149‑1 (MQ=255) tGGACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCttt > 1:9445487/1‑149 (MQ=255) tGGACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCttt > 2:5614261/1‑149 (MQ=255) gACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAATAAGCTTTTg < 1:5419823/149‑1 (MQ=255) cAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGaa > 1:8349508/1‑149 (MQ=255) aaaGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATa > 1:382385/1‑149 (MQ=255) aaGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATaa > 1:7901620/1‑149 (MQ=255) aaGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATaa > 1:9098222/1‑149 (MQ=255) aaGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATaa > 1:2134956/1‑149 (MQ=255) ttCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCtt > 1:6813105/1‑149 (MQ=255) tCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCttt > 2:3492859/1‑149 (MQ=255) tCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCttt < 1:4357438/149‑1 (MQ=255) aaCAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCttttt > 2:3178074/1‑149 (MQ=255) aaCAGAAAGTGTTACCATTAAATACGACAAAGCTTATGGTAAAATTACAAGTAAACCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATATAAAATAAAAAAAAGCTTTTGAATAAGCttttt < 2:5798814/149‑1 (MQ=255) aaCAGAAAGTGTTAACGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCttttt < 2:7633805/149‑1 (MQ=255) aaaGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTAttt > 2:4189249/1‑149 (MQ=255) aaaGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAACTTTTTTAttt > 2:3712295/1‑149 (MQ=255) aGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTc < 1:9228403/149‑1 (MQ=255) gtgtTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCa < 1:3933373/149‑1 (MQ=255) gtgtTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCa < 1:9820798/149‑1 (MQ=255) gtgtTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCa < 1:1173861/149‑1 (MQ=255) gtgtTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCa > 2:8235963/1‑149 (MQ=255) aCCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCtttttt > 1:2236540/1‑137 (MQ=255) aCCGTTCAATACGACAAAGATTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACATTAGCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAATAAAGCTTATGAATAAGCTTTTTTATTTTCAGAAAt > 2:6635208/1‑149 (MQ=255) cGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATaa < 1:5942963/149‑1 (MQ=255) gTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTGTGAATAAGCTTTTTTATTTTCAGAAATAAc > 1:3540601/1‑149 (MQ=255) tCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACag > 1:10013215/1‑149 (MQ=255) tCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACag < 1:2555407/149‑1 (MQ=255) tACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACagaaga < 1:6386121/149‑1 (MQ=255) tACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACagaaga > 2:8395089/1‑149 (MQ=255) aCAATGATTCTGGTCAAATTACATGTAAATCTAATTTTAATGAATAAGAAACTTTACGTCATCTCTGAAAAGATGGAAGGATAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGa < 2:1716859/149‑1 (MQ=255) aCAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCAGCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGa < 1:1673899/149‑1 (MQ=255) cAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGaa > 1:10395459/1‑149 (MQ=255) acaGCTTCTGGTCAAATAACAAGTAAATCTACAGTTAATGAATAAGAAACTTTACCGCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGaaa < 2:7846211/147‑1 (MQ=255) aaaGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGaaa > 1:10151277/1‑149 (MQ=255) aatCTGGTAAAATTAAAAGTAAATATAAATTTAATGCATAAGAAACTTTACATCATCTATAAAAAGATGGAAGAAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAActc < 2:2376304/147‑1 (MQ=255) ttCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACTGAAGATGGAAAActct > 1:7039209/1‑149 (MQ=255) tCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACtctt < 1:8525787/149‑1 (MQ=255) cTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACtcttc > 1:7680547/1‑149 (MQ=255) cTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACtcttc < 1:6523850/149‑1 (MQ=255) ggTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCta > 2:8736548/1‑149 (MQ=255) ggTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCta > 1:8449181/1‑149 (MQ=255) gTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCtaa > 2:1099865/1‑149 (MQ=255) tCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACTTCATCTCTGAAAAGATGGACGGAAAGTTTATCTTAAATAAAAAAAAGTGACTGAATAAGTTTTTTTATTTTCAGAAATGACACAATATGGAAACCTCTTCtaat > 2:1964853/1‑149 (MQ=255) aaaTTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCtattaa > 2:8577701/1‑149 (MQ=255) aaaTTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCtaataa < 1:2407613/149‑1 (MQ=255) aaTTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATaaa > 1:8839156/1‑149 (MQ=255) tACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATa > 2:3849551/1‑149 (MQ=255) aGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAAc > 2:2083659/1‑149 (MQ=255) aaaTCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTg > 2:4679909/1‑149 (MQ=255) aaaTCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTAAGAAATAACAGAATATGGAAAACTCTTCTAATTAAATATAACTTg > 2:2696460/1‑149 (MQ=255) aaTCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGa > 1:268251/1‑149 (MQ=255) tCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGt > 1:9584613/1‑149 (MQ=255) caaagtttAAGGGATGAAAAACTTTATCTAATATCTGAAAGAATGGAAGTAAAGTTTATCTAAAAAAAAAAAAAGCGTTTGAATTAGCTTTTTTATTTTAAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTg < 2:4426763/144‑1 (MQ=255) cTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTg > 1:1881006/1‑149 (MQ=255) aaaTTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACATAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGAt > 1:146055/1‑149 (MQ=255) aaaTATAAAGCAAAAAAAACATTAACTAATATATGAAAAAATGGAAAGAAAGTATAACTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGAt < 2:10232958/149‑1 (MQ=255) aaTTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATa < 1:8059183/149‑1 (MQ=255) tttAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATaaa < 1:10247256/149‑1 (MQ=255) tttAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATaaa > 1:5629203/1‑149 (MQ=255) aaTGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATaaaaaa > 2:6229642/1‑149 (MQ=255) aTGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAAATCTTCTAATAAAATAGAATTTGTGTGATAAAAAAt > 2:3402280/1‑149 (MQ=255) tGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATa > 2:9329110/1‑149 (MQ=255) tGCAAAAGAAACTTTACCTCATCGCTAAAAAGATGAAAGGAAAGTTTAACTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATa < 2:8019364/149‑1 (MQ=255) cATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGa < 1:6749643/149‑1 (MQ=255) aTAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGAc < 1:9707982/149‑1 (MQ=255) aaaaCTTTACCTCATCTCTGAAAAAATGAAAGAAAAATTAAAAAAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAAAAAAAAAAAAAAAAAATAGACCTTc < 2:2976736/148‑1 (MQ=255) aaaCTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCt > 2:9055437/1‑149 (MQ=255) aaCTTTACCGCATCTCTGGAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGTTGGAAAACTCTTCTAATAACATAGCACTTGAGTGATAAAAAATAGACCTTCTa < 2:6082700/149‑1 (MQ=255) tttACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAg > 1:504159/1‑149 (MQ=255) tACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTCTTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAAATTGAGTGATACAAAATAGACTTTCTAAAGGt > 2:5473682/1‑149 (MQ=255) tACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGt < 2:7255931/149‑1 (MQ=255) tCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAt < 1:7240895/149‑1 (MQ=255) cATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAtt > 2:6828574/1‑149 (MQ=255) aacactGAAAAAATGGAAGGAAAGTTTATCTAAAAAAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAttt < 2:9757144/145‑1 (MQ=255) aTCTATGAAAAGAAAGAAGGAAAGTTTATCTAAAAAAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAttt < 2:5201462/149‑1 (MQ=255) ctGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAttttttt > 1:447162/1‑149 (MQ=255) aaaaGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGACTAAGCTTTTTTATTTTCAGAAATAAAAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAttttattttt > 2:6980391/1‑149 (MQ=255) aGATGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAg < 1:4205831/149‑1 (MQ=255) tGGAAGGAAAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGaaa > 2:742744/1‑149 (MQ=255) ggaagggaagTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTGTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTGTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGTTATATTTTTTTTTTGAGaaat > 2:5078746/1‑148 (MQ=255) ggaaggaaAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAAc < 1:2975824/149‑1 (MQ=255) gaaggaaAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTA‑TTTTTTTTTAAGAAACAg > 1:2860848/1‑149 (MQ=255) gaaggaaAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCGAAAGGTCTATTTTTTTTTTAAGAAACa > 1:7435898/1‑149 (MQ=255) aaggaaAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAg < 2:10034349/149‑1 (MQ=255) aggaaATGTTATCAAAAATAAAAAAGAGCTTTTGATGAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGATCTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGa < 2:9577909/149‑1 (MQ=255) aggaaAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGa < 1:5144202/149‑1 (MQ=255) aggaaAATTTAACAAAAATAAAAAAAATCTTGTGAATAAGCTTTTTTAATTTCAGAAATAACAGAAGATAGAAAACTCTGCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACCGa < 2:9846760/149‑1 (MQ=255) gaaAGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGaaa < 1:3344285/149‑1 (MQ=255) aaGTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTATATTTTTTTTTTAAGAAACAGAAAtt > 2:1567211/1‑149 (MQ=255) gTTTATCTAAAATAAAAAAAAGCTTTTTAATAAGCTTTTTTATTTTAAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTa < 1:5295060/149‑1 (MQ=255) gTTTATCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAAAAGAAAtata > 2:120533/1‑149 (MQ=255) ttATCTAAAATAAAAAAAAGCTTTTGAAAAAGCTTTTTTATTTTCAGAAGTAACAGAAGAGGGAAAACTTTTCTAATAAAAGAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTAGTTTAAAAAACAGAAGTTTACt > 2:4894936/1‑149 (MQ=255) aTCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTa > 1:6134341/1‑149 (MQ=255) aTCTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTa > 1:1279310/1‑149 (MQ=255) cTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAATTTGAGTGATAAAAAATAGCCCTTCTAACGGTCTATTTTTTTTTTAATAAAGAGAAatttatttgtt > 2:6421301/1‑146 (MQ=255) cTAAAATAAAAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGa < 1:8196294/149‑1 (MQ=255) aataaaaaaAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGATTga < 1:8768800/149‑1 (MQ=255) aataaaaaaAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGATTga > 1:3099338/1‑149 (MQ=255) ataaaaaaAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTA‑TTTTTTTTTAAGAAAAAGAAATTTACTTAGATTgaga > 1:4837360/1‑149 (MQ=255) | TCTTGGACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAAATAGAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGATTGAGA > AM406671/1572113‑1572399 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |