| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,942,432 | T→C | I80V (ATC→GTC) | llmg_1960 ← | hypothetical protein predicted by Glimmer/Critica |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,942,432 | 0 | T | C | 99.6% | 4909.1 / NA | 1209 | I80V (ATC→GTC) | llmg_1960 | hypothetical protein predicted by Glimmer/Critica |
| Reads supporting (aligned to +/- strand): ref base T (2/1); major base C (585/614); minor base G (5/0); total (592/617) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.80e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1209 total aligned reads displayed.
TTTTCGATTTTTAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGATTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCAATAATA > AM406671/1942286‑1942577 | ttttCGATTTTTAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTa > 1:5123067/1‑149 (MQ=255) cGATTTTTTTTTTTTTTTTTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCTTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGt > 2:4030849/1‑149 (MQ=255) cGATTTTTAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGt < 1:8877152/149‑1 (MQ=255) cGATTTTTAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGt < 1:4422869/149‑1 (MQ=255) ttttAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGt < 1:4922918/149‑1 (MQ=255) ttttAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGCACTGt > 1:4796883/1‑149 (MQ=255) ttttATTTTTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAGAAAACGGCTAAAAAGTTGGTATGTTGTGTCGTTAATTGAACAAGCTGACGAGTTGTTGTACTTCTTTTGACTAAGGTCTGta > 2:10320684/1‑148 (MQ=255) aaTTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCa > 2:8219871/1‑149 (MQ=255) tCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATa < 1:9413836/149‑1 (MQ=255) ttggTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAGAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTg < 1:5389624/146‑1 (MQ=255) ttAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCTTTGTTGTACTTCTTTTGAGTAAGGTCTGTCCCAAAAACTg > 2:3489000/1‑149 (MQ=255) ttAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTg < 1:1971130/149‑1 (MQ=255) aGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTa < 2:4912363/149‑1 (MQ=255) tCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAAt > 1:2344107/1‑149 (MQ=255) cGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATc < 1:9041765/149‑1 (MQ=255) tAAATAGAGCGTGAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAACAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTg < 2:288356/149‑1 (MQ=255) aaaTAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGt > 2:3915495/1‑149 (MQ=255) aTAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGttt > 1:4157521/1‑149 (MQ=255) tAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTc > 2:7347966/1‑149 (MQ=255) agagCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTcc < 1:355546/149‑1 (MQ=255) agagCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAAGTCTGTCCCAAATACTGTAACAATCCTGTTTcc > 2:302138/1‑149 (MQ=255) gagCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCt < 1:8388668/149‑1 (MQ=255) agCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCtt < 2:8017419/149‑1 (MQ=255) gCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTa < 1:5269580/149‑1 (MQ=255) cGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAGAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTaa < 2:889725/149‑1 (MQ=255) cGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCTCAAATACTGTAACAATCCTGTTTCCTTaa > 2:2475350/1‑149 (MQ=255) tgTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTaaa > 2:4711152/2‑149 (MQ=255) tAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAac < 2:370971/149‑1 (MQ=255) aaCCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAaccac > 1:9629921/1‑149 (MQ=255) aCCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGATGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAaccacc > 1:6381698/1‑149 (MQ=255) ccGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAAccacca > 1:1791524/1‑149 (MQ=255) ccGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTATACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTATACTTAAAAccacca > 1:2510796/1‑149 (MQ=255) tCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGCACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAAtt > 2:1654917/1‑149 (MQ=255) tCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAAtt < 2:4550887/149‑1 (MQ=255) cAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTa < 2:5251349/149‑1 (MQ=255) aaaaTTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTAc > 2:8429415/1‑149 (MQ=255) ttGTTAAATCGATTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGc < 2:6375033/149‑1 (MQ=255) gTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCAt < 1:10010064/149‑1 (MQ=255) tAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCa < 1:7165769/149‑1 (MQ=255) aaaaCGCTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTACCGTCGTAAATCGAACACGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTTTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACGAGCATCaa < 2:1857572/149‑1 (MQ=255) aaaTCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCaa > 2:9305190/1‑149 (MQ=255) aaaTCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCaa < 1:1177277/149‑1 (MQ=255) aaTCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAAt > 2:1192815/1‑149 (MQ=255) aTCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATc > 1:7847359/1‑149 (MQ=255) tCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATcc < 1:9842170/149‑1 (MQ=255) ttGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGaa < 2:3209386/149‑1 (MQ=255) gTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAAc < 1:6609622/149‑1 (MQ=255) tAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAAcc > 2:9789994/1‑149 (MQ=255) aaaaaaaaCGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCg > 1:30935/1‑149 (MQ=255) aaaaaaaaCGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCg < 1:3705138/149‑1 (MQ=255) aaaaaaaaCGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCg > 2:7152370/1‑149 (MQ=255) aaaaaaaaCGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCg > 1:8001742/1‑149 (MQ=255) aaaaaaaCGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGt > 1:395361/1‑149 (MQ=255) aaaaaaCGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTa < 2:10465134/149‑1 (MQ=255) aaaaaCGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTaa > 1:2135270/1‑149 (MQ=255) aaCGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACaa < 2:6191919/149‑1 (MQ=255) aaCGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACaa < 2:9175375/149‑1 (MQ=255) aaCGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACaa > 2:10125894/1‑149 (MQ=255) cGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATg > 1:580181/1‑149 (MQ=255) gCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGAc < 1:4345982/149‑1 (MQ=255) aaaaGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATGCTGAAACCGTAACAATGACATGa > 1:5976345/1‑149 (MQ=255) aaaaGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGa < 2:9646304/149‑1 (MQ=255) aagaagGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCTGTTTTGTACTTCTTTTGACTAAGCTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAAACGTAACAAAGACATGCTa > 2:692335/1‑149 (MQ=255) aagaagGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATa > 1:2712357/1‑149 (MQ=255) gaagGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAAt > 1:7653456/1‑149 (MQ=255) gaagGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAAt < 1:2860625/149‑1 (MQ=255) aagGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAAtt > 1:1642672/1‑149 (MQ=255) agGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTg > 2:10020202/1‑149 (MQ=255) ggTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGa > 2:8692527/1‑149 (MQ=255) tAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGaaa < 1:6785087/149‑1 (MQ=255) aGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGaaaaa > 2:3389424/1‑149 (MQ=255) aGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGaaaaa < 1:6198306/149‑1 (MQ=255) gCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGa > 2:6633280/1‑149 (MQ=255) cgtcgtAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAg > 2:9484181/1‑149 (MQ=255) gtcgtAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGt < 2:5778500/149‑1 (MQ=255) cgtAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTg < 1:10136380/149‑1 (MQ=255) cgtAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTg > 1:3363268/1‑149 (MQ=255) cgtAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTg < 2:5421318/149‑1 (MQ=255) tAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTc < 1:10461098/149‑1 (MQ=255) aTCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACt < 1:9207653/149‑1 (MQ=255) tCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTc < 1:8195347/149‑1 (MQ=255) tCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTc < 1:6982489/149‑1 (MQ=255) gAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGAAAAAAGAAAAAACGAGTTGTCACTCCa < 2:7473909/149‑1 (MQ=255) cAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCAccc > 2:2748004/1‑149 (MQ=255) gCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCaaa > 1:10297698/1‑149 (MQ=255) cTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAAc > 1:8626483/1‑149 (MQ=255) aCGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTaa < 2:1460691/149‑1 (MQ=255) cgcgTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAAt > 2:5966488/1‑149 (MQ=255) cccgTTGTTGTACTTCTTTTGACTAACGTCTGTCCCAAATACTGTAACAATCCTATTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACAAAATAATAGAAAAAACGAGTTGTCACTCCACCCAAACTAAt < 2:7610427/147‑1 (MQ=255) gcgTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCCAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAATCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAACCGAGTTGTCACTCCACCCACACTAATg < 2:785545/149‑1 (MQ=255) ttgttgTACTTCTTTTGACTAAGGTCTGTCCCAAATACAGTAACAAACATGTTTCCTTAAAACCACCAAATACAAGCATCAATCCTGAAACCGTAACAATGACAAAAAAAAAGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCa < 2:2045827/149‑1 (MQ=255) tgttgtACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCaa < 1:5613826/149‑1 (MQ=255) gttgtACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCaat > 1:1450260/1‑149 (MQ=255) ttgtACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCaata < 2:4199757/149‑1 (MQ=255) gtACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCaataat < 1:4610515/149‑1 (MQ=255) ttcttTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCa > 1:2964253/1‑149 (MQ=255) tcttTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCaa > 2:228412/1‑149 (MQ=255) tcttTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCaa < 1:7381446/149‑1 (MQ=255) tcttTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCaa > 2:5633038/1‑149 (MQ=255) tGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACAAAATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCAataata < 2:4373121/149‑1 (MQ=255) | TTTTCGATTTTTAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGATTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCAATAATA > AM406671/1942286‑1942577 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |