| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,942,730 | C→A | intergenic (‑61/+328) | llmg_1960 ← / ← tenA | hypothetical protein predicted by Glimmer/Critica/transcriptional activator TenA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,942,730 | 0 | C | A | 99.7% | 4651.2 / NA | 1202 | intergenic (‑61/+328) | llmg_1960/tenA | hypothetical protein predicted by Glimmer/Critica/transcriptional activator TenA |
| Reads supporting (aligned to +/- strand): ref base C (3/1); new base A (552/646); total (555/647) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.41e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1202 total aligned reads displayed.
ATCAGAAAAACTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATACCAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGATCTGA > AM406671/1942584‑1942874 | tCAGAAAAACTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAg > 2:4347464/1‑149 (MQ=255) cAGAAAAACTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGt > 1:10141725/1‑149 (MQ=255) aGAAAAACTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTg > 1:9111977/1‑149 (MQ=255) gAAAAACTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGa < 1:10004135/149‑1 (MQ=255) aaCTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAg > 2:3552219/1‑149 (MQ=255) aCTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGc < 1:7356279/149‑1 (MQ=255) tGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCtttt > 2:763592/1‑149 (MQ=255) tCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTTTTATTCTCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACCTTTACAAGCTTTTtc > 2:8725217/1‑149 (MQ=255) tCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTtc > 1:3601117/1‑149 (MQ=255) cACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTtctc < 2:5217319/149‑1 (MQ=255) cACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTtctc < 1:5962571/149‑1 (MQ=255) tAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACt > 1:7962047/1‑149 (MQ=255) aGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACtt < 2:580146/149‑1 (MQ=255) aaaCCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTaa > 2:7821791/1‑149 (MQ=255) aCCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTaaaa > 2:4005223/1‑149 (MQ=255) aCCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTaaaa > 2:9215610/1‑149 (MQ=255) ccAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAg > 2:5034490/1‑149 (MQ=255) ccAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAg > 2:2696906/1‑149 (MQ=255) cAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGc > 2:9805611/1‑149 (MQ=255) cAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGc > 1:1023949/1‑149 (MQ=255) ttttAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAat < 1:7686663/149‑1 (MQ=255) aaTGGCTGTCCAGATTTTTTGGTATTCGCGCTGAGAAGCTCCTTGTTCCACTACTTCTCCTTAATAGCATATAAAATTTTGCACCACAATAAATTATAACATTCAAAGATAACAGTTTCACTTCTTTTCTCACTTACAATCGAattatt > 2:3141877/1‑149 (MQ=255) aTGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTAttt > 1:9461330/1‑149 (MQ=255) ggCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTc > 1:1239613/1‑149 (MQ=255) ggCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTc < 2:2523101/149‑1 (MQ=255) ggCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTc < 2:1830741/149‑1 (MQ=255) gCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCa > 1:5028585/1‑149 (MQ=255) gTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGt < 1:1992847/149‑1 (MQ=255) gTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGt < 1:2993410/149‑1 (MQ=255) tCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTg < 2:9457680/149‑1 (MQ=255) tCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTg < 1:6753906/149‑1 (MQ=255) ccAGATTTTTTTTTATTTTCTCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGa > 2:2123596/1‑149 (MQ=255) cAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGaa < 2:10438293/149‑1 (MQ=255) aTTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACAt > 1:564372/1‑149 (MQ=255) tttttGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCt < 1:382639/149‑1 (MQ=255) ttGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGa < 2:2309232/149‑1 (MQ=255) ttGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGa < 1:2647412/149‑1 (MQ=255) gTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTc > 1:5277486/1‑149 (MQ=255) aTTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCaa > 2:10186550/1‑149 (MQ=255) tCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATa < 1:1159342/149‑1 (MQ=255) gcgcTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGa < 2:957057/149‑1 (MQ=255) cgcTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGAt > 1:4206178/1‑149 (MQ=255) gcTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGAtt > 1:8091663/1‑149 (MQ=255) cTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTc < 1:1654917/149‑1 (MQ=255) tGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCa < 2:631289/149‑1 (MQ=255) tGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCa > 2:3426582/1‑149 (MQ=255) tAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCattat < 2:1653619/149‑1 (MQ=255) aGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCattatt < 2:8203954/149‑1 (MQ=255) gCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTAttt > 1:9922291/1‑149 (MQ=255) gCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTAttt > 1:7003381/1‑149 (MQ=255) gCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTAttt > 2:7500106/1‑149 (MQ=255) gCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTAttt > 2:6464671/1‑149 (MQ=255) cTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTAtttt < 1:4663225/149‑1 (MQ=255) gAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGa > 1:7827609/1‑149 (MQ=255) aTGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACg < 1:1818761/149‑1 (MQ=255) gTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACgag > 1:8559178/1‑149 (MQ=255) tCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGAt < 1:7496289/149‑1 (MQ=255) ctactTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATc < 1:8813203/149‑1 (MQ=255) ctactTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTGTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATc > 1:6591870/1‑149 (MQ=255) tactTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCa > 2:8551467/1‑149 (MQ=255) actTCTCCTAACTAGCATATAAAATTTTNCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCAt > 1:5802101/1‑149 (MQ=255) actTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCAt < 1:3375725/149‑1 (MQ=255) ctcCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTa < 1:7174770/149‑1 (MQ=255) ctcCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTa < 1:4363717/149‑1 (MQ=255) ctcCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTa < 2:6199206/149‑1 (MQ=255) tcCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTaa > 2:4172661/1‑149 (MQ=255) tcCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATAATTTTaa < 1:2837791/149‑1 (MQ=255) tcCTAACTAACATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTaa < 2:5971551/149‑1 (MQ=255) aaCTAGCATATAAAATTTTGCACCACAATAAATTATCACATCTCAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAAtt < 2:2964253/149‑1 (MQ=255) aaCTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAAtt > 1:6234114/1‑149 (MQ=255) aCTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAAttt < 1:9658312/149‑1 (MQ=255) aCTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAAttt < 2:6649405/149‑1 (MQ=255) cTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTTACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAAtttt < 2:3821155/149‑1 (MQ=255) cTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAAtttt > 2:1461216/1‑149 (MQ=255) cTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAAtttt < 1:2139053/149‑1 (MQ=255) cTAGCATATAAAATTCTGCACCACTATAATTTATGACATCTAAAGATAACAGTGTCGAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTCTTTTGACGGGATAATCATTTTAGAAtttt < 2:2842748/149‑1 (MQ=255) tAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTta < 1:5527755/149‑1 (MQ=255) atatAAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATAtt > 1:9283686/1‑149 (MQ=255) tataAAATTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATAttt > 2:10294535/1‑149 (MQ=255) aaaaTTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTTACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTcac > 2:5356303/1‑149 (MQ=255) aaaaTTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGACTTATTTTCAAGACAACATCTTGACTCAATAGATTCATTATTATGACGAGATAATCACTTTAATATCTCATATATcac > 2:4687701/1‑149 (MQ=255) aaaaTTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTcac < 2:1191071/149‑1 (MQ=255) aaaTTTTGGACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTcaca < 1:6039501/149‑1 (MQ=255) aaaTTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTcaca < 1:3460831/149‑1 (MQ=255) aTTTTGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCacaaa < 2:2000314/149‑1 (MQ=255) tttGCACCACAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCacaaaac < 1:3969135/149‑1 (MQ=255) caccacAATAAATTATAACATCTAAAGATAACAGTGACAAGATTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCAcaaaacaaaa > 2:7068233/1‑149 (MQ=255) ccacAATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACaaaaaa > 1:8384274/1‑149 (MQ=255) cacaATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAAt < 1:6392818/149‑1 (MQ=255) cacaATAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTAAAAAAAAAAAAAAt < 2:4841053/149‑1 (MQ=255) aaTAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATccc < 2:7243904/149‑1 (MQ=255) aTAAATTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATcccc < 2:8040640/149‑1 (MQ=255) aaTTATAACATCTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTg > 2:6872697/1‑149 (MQ=255) cTAAAGATAACAGTGACAAGCTTTTTTTTTTTTTTTATCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGa > 2:8920737/1‑149 (MQ=255) cTAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGa > 2:8363286/1‑149 (MQ=255) tAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGAt < 1:1468712/149‑1 (MQ=255) tAAAGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGAt < 1:10448377/149‑1 (MQ=255) aaaGATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGATc > 1:3166000/1‑149 (MQ=255) aaGAAAACAGTGACAATCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAAGAGATTCATTAATTTGACGAGATAATCATTTTAAAATTTTATATGTCACAAAACAAAAAATCCCCCTGACTAGGAGGGATCt < 2:5578065/149‑1 (MQ=255) gATAACAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGATCTga < 1:2376377/149‑1 (MQ=255) | ATCAGAAAAACTTTGTCCACTAGAAACCAGTTTTTAATGGCCGTCCAGATTTTTTGGTATTCGCGCTGAGTAGCTGAATGTTCCACTACTTCTCCTAACTAGCATATAAAATTTTGCACCACAATAAATTATAACATCTAAAGATACCAGTGACAAGCTTTTTCTCACTTAAAAGCGAATTATTTTCAAGTGAACATCTTGACTCAATAGATTCATTATTTTGACGAGATAATCATTTTAAAATTTTATATTTCACAAAACAAAAAATCCCCCTGACTAGGAGGGATCTGA > AM406671/1942584‑1942874 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |