| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 2,122,558 | C→T | A57T (GCC→ACC) | cfa ← | cyclopropane‑fatty‑acyl‑phospholipid synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 2,122,558 | 0 | C | T | 99.8% | 4684.2 / NA | 1198 | A57T (GCC→ACC) | cfa | cyclopropane‑fatty‑acyl‑phospholipid synthase |
| Reads supporting (aligned to +/- strand): ref base C (1/1); major base T (579/615); minor base G (0/2); total (580/618) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1198 total aligned reads displayed.
TCCCAAAAGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCGAGGC‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCAAGTGCTTTGTTC > AM406671/2122412‑2122703 | tCCCAAAAGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑Tg < 1:9045578/149‑1 (MQ=255) cccAAAAGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑Tgg > 1:2115815/1‑149 (MQ=255) caaaaaGTTTGTGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGc < 2:121649/147‑1 (MQ=255) aaaaGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCAt < 2:3799167/149‑1 (MQ=255) aaGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATtg > 2:7371886/1‑149 (MQ=255) aGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATtga > 1:9936890/1‑149 (MQ=255) gAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATa < 1:4115499/149‑1 (MQ=255) gCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATaaa < 2:7126977/149‑1 (MQ=255) cATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAAt > 2:6755231/1‑149 (MQ=255) tattttACAAAAGGCCGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAACTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TCGCATTGATGATAAATCGc < 2:6932735/146‑1 (MQ=255) tAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAAGCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGc < 2:7789914/149‑1 (MQ=255) aTTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTa > 1:8065388/1‑149 (MQ=255) aTTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACCGTTAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTGATCCATATAAGCCTCAGCTAATACC‑AGCCTTGGCATTGATGATAAATCGCTa < 2:5716405/149‑1 (MQ=255) tttACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTaa < 2:3976937/149‑1 (MQ=255) tttACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTaa > 1:5619851/1‑149 (MQ=255) ttACCAAAGCCAGATTGGTCAGTTAAAACACTGTCCGCTTTACGGTAAGCTGAAGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCTTCAGCTAATACCAAGGT‑TGGCATGGATGATAAATCGCTaaa > 2:5372351/1‑149 (MQ=255) ccAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATga > 1:5973054/1‑149 (MQ=255) ccAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACACCCTTCAATCTCAAGTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATga < 2:6359155/149‑1 (MQ=255) aaGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGaa < 1:4547052/149‑1 (MQ=255) aGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAAt < 2:919822/149‑1 (MQ=255) aGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAAt < 2:1599110/149‑1 (MQ=255) aGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAAt > 1:2618485/1‑149 (MQ=255) ccAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAAttt > 2:2992127/1‑149 (MQ=255) aGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAAttttt > 1:6768559/1‑149 (MQ=255) gATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATCAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAACTGAGAAtttttt > 2:2327963/1‑149 (MQ=255) ttGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACACGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCCAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTAt > 1:1777605/1‑149 (MQ=255) ttGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTAt > 2:2133075/1‑149 (MQ=255) ttGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTAt < 1:4716395/149‑1 (MQ=255) tctgTTAAAGAACTATCCGCTGTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCTTTCAATCTCAATTTCTGCATTCATATAAGCCTCAACTAATACCAAGGT‑GGGCATTGATGATAAATCGCTAAGTGAGAATTTTTTATTGaa < 2:10101291/146‑1 (MQ=255) ttAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTg > 1:5013044/1‑149 (MQ=255) aaaaCTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGAtgt > 1:10167926/1‑149 (MQ=255) aaCTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGa < 1:1469696/149‑1 (MQ=255) cTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAAc > 1:9672193/1‑149 (MQ=255) gTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCt > 1:156556/1‑149 (MQ=255) gTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCt > 2:8526466/1‑149 (MQ=255) gTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGACCCTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGATAATACCAAGGT‑TTGCATTGATGATAAATCGCTACATGAGAATTTTTCATTGAAAGTGATGTGACCCt < 2:9772138/149‑1 (MQ=255) tCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTg < 1:10288581/149‑1 (MQ=255) cTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCg > 1:5170498/1‑107 (MQ=255) cTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGtt < 2:4850302/149‑1 (MQ=255) ttACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTtc < 2:10448334/149‑1 (MQ=255) cGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTcc < 1:2365473/149‑1 (MQ=255) cGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTcc < 2:4437599/149‑1 (MQ=255) cGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTcc < 1:2754706/149‑1 (MQ=255) ggTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCt < 2:3346445/149‑1 (MQ=255) gTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCtt > 1:1254659/1‑149 (MQ=255) gTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCtt < 2:8933566/149‑1 (MQ=255) aaGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCa < 1:3914433/149‑1 (MQ=255) aGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATCTTTTATTGAAAGTGATGTGAACCTGCGTTTCTCCTTCAc < 2:3118925/149‑1 (MQ=255) gCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATtgatg < 2:8051510/88‑1 (MQ=255) gCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCAcc < 2:5573432/149‑1 (MQ=255) gCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCAcc > 1:6520699/1‑149 (MQ=255) tGATGCAACAAGCTCTTGGATACTCCCTACAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGAGATGTGAACCTGAGTTTCTCCTTCACCAt > 2:6135262/1‑149 (MQ=255) aTGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATAc > 2:9487361/1‑149 (MQ=255) tGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACt > 1:4456095/1‑149 (MQ=255) tGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACt > 1:1001108/1‑149 (MQ=255) tGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACt < 1:7102417/149‑1 (MQ=255) gCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACtt > 2:3679677/1‑149 (MQ=255) caaGCTCTTGGATACTCCCTTCAATCTCCATTTCTTCATCCATCTAAGCCTCAGCTAACACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCt < 1:7577660/149‑1 (MQ=255) caaGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCt < 1:865473/149‑1 (MQ=255) aaGCTCTTGGATACTCCCTTCAATCGCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAAGTGTTTATGGCAAGTGATGTCAACCTGAGTTTCTCCTTCACCATACTTTTCTg > 2:3429543/1‑149 (MQ=255) tGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTcc < 2:2744750/149‑1 (MQ=255) ggATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCa < 1:4919539/149‑1 (MQ=255) gATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCAt < 2:5083174/149‑1 (MQ=255) aTACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATc < 1:9505472/149‑1 (MQ=255) cTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTATTTCCATCCCa < 1:5325679/149‑1 (MQ=255) gcccTTCTATCTCAATTTCTTCATTCATATAATCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAATTCGCTAAATGAAAATTTGTTATTGAAAGTTATGTGAACCTGAGTTTCTCCATCACCATACTTTTCTGTTTTTCCATCCCac < 2:1468171/148‑2 (MQ=255) ccTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATa < 2:10228652/149‑1 (MQ=255) cTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATaa < 2:1780120/149‑1 (MQ=255) ttCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAg > 1:3631564/1‑149 (MQ=255) tCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGt > 1:3001924/1‑149 (MQ=255) tCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTAATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGt < 2:2256482/149‑1 (MQ=255) cAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTc > 1:5750809/1‑149 (MQ=255) aTCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCAc < 1:9241860/149‑1 (MQ=255) tttCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATg > 1:8845866/1‑149 (MQ=255) tttCTTCATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATg < 1:5516832/149‑1 (MQ=255) ttcttcATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATgg < 1:2227402/149‑1 (MQ=255) ttcttcATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATgg > 1:7269855/1‑149 (MQ=255) tcttcATTCATATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATggg < 1:3544610/149‑1 (MQ=255) tcattcatATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGat < 1:3355257/149‑1 (MQ=255) attcatATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGatat > 1:1887964/1‑149 (MQ=255) catATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGGTGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGGTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCACTCGGGATATCGa > 2:5223658/1‑149 (MQ=255) catATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGa < 2:4652203/149‑1 (MQ=255) catATAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGa < 1:6960469/149‑1 (MQ=255) atatAAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGaa < 2:9640843/149‑1 (MQ=255) tataAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGaaa > 1:6101220/1‑149 (MQ=255) ataAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAg < 2:8314848/149‑1 (MQ=255) taAGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGc < 2:6654112/149‑1 (MQ=255) aaGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCa > 2:5992338/1‑149 (MQ=255) aaGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCa > 1:8466395/1‑149 (MQ=255) aGCCTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCaa < 2:9386630/149‑1 (MQ=255) ccTCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACt < 2:2578098/149‑1 (MQ=255) tCAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGc > 1:3190873/1‑149 (MQ=255) cAGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGTATATCGAAAGCAACTGCa > 2:1891501/1‑149 (MQ=255) aGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCaa < 1:1060662/149‑1 (MQ=255) aGCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCaa > 2:4171457/1‑149 (MQ=255) gCTAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCAAg < 1:788312/149‑1 (MQ=255) tAATACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCAAGTg > 1:6271574/1‑149 (MQ=255) aTACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCAAGTGCt > 1:7377539/1‑149 (MQ=255) tACCAAGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCAAGTGCtt > 2:8671424/1‑149 (MQ=255) aGGT‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGCAAGCAACTGCAAGAGCTTTGtgc > 2:759035/1‑147 (MQ=255) | TCCCAAAAGTTTGAGCATTAATTTACCAAAGCCAGATTGGTCAGTTAAAAAACTGTCCGCTTTACGGTAAGCTGATGCAACAAGCTCTTGGATACTCCCTTCAATCTCAATTTCTTCATTCATATAAGCCTCAGCTAATACCGAGGC‑TGGCATTGATGATAAATCGCTAAATGAGAATTTTTTATTGAAAGTGATGTGAACCTGAGTTTCTCCTTCACCATACTTTTCTGTTTTTCCATCCCAATAAGTCACTGCAATGGGGATATCGAAAGCAACTGCAAGTGCTTTGTTC > AM406671/2122412‑2122703 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |