Predicted mutation
evidence seq id position mutation annotation gene description
RA AM406671 1,223,555 Δ1 bp intergenic (+243/+302) llmg_1251 → / ← llmg_1252 hypothetical protein predicted by Glimmer/Critica/conserved hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM4066711,223,5550G.90.8% 2570.8 / 281.5 694intergenic (+243/+302)llmg_1251/llmg_1252hypothetical protein predicted by Glimmer/Critica/conserved hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base . (277/353);  minor base T (25/39);  total (302/392)
Fisher's exact test for biased strand distribution p-value = 5.09e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 694 total aligned reads displayed.

TTAGGGTCGGTATTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAAGTGATATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATTAAGATAAGAATCTTTC  >  AM406671/1223418‑1223695
                                                                                                                                         |                                                                                                                                            
 tagggtcGGTATTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGTGGTTAGTTTCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGTTCAGTCTTAAATAGTATTATTAAt                                                                                                                                 >  2:934641/1‑149 (MQ=21)
  agggtcGGTATTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAAtt                                                                                                                                >  2:3435495/1‑149 (MQ=255)
   gggtcGGTTTTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAAttt                                                                                                                               <  1:5549278/149‑1 (MQ=25)
   gggtcGGTATTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGGGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGCCGGTATTAGGGTCAGTATTAGGGTCAGTATTAAATAGTATTATTAAttt                                                                                                                               >  1:6931272/1‑149 (MQ=21)
    ggtcGGTATTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAAtttt                                                                                                                              >  1:4497714/1‑149 (MQ=255)
      tcGGTATTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTaa                                                                                                                            <  1:4317611/149‑1 (MQ=255)
      tcGGTATTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTaa                                                                                                                            >  2:3199235/1‑149 (MQ=255)
          tATTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACt                                                                                                                        >  1:4007653/1‑149 (MQ=255)
           aTTAGGGTTAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTa                                                                                                                       <  1:6156275/149‑1 (MQ=255)
           aTTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTa                                                                                                                       >  1:8531980/1‑149 (MQ=255)
             tAGGGTGAGTATTAGGGTCGGTATGGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGa                                                                                                                     <  2:46070/149‑1 (MQ=25)
             tAGGGTCAGTATTAGGGTCGGTATGGAGGGCAGTATGGAGGTGAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGa                                                                                                                     <  2:2277070/149‑1 (MQ=25)
              aGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGAc                                                                                                                    <  2:8515258/149‑1 (MQ=255)
                ggTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCt                                                                                                                  <  2:5882801/149‑1 (MQ=255)
                 gTCAATTTTAGGGTGGGTTTTGAGTTTTATTTTGAGGTTTGTAGTTGGGTCAGTATTGGGGTCAGTATTAGGGTTAGTATTAGGGTCAGTATTAGGGTCAGTATTAGGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTa                                                                                                                 <  2:8746379/149‑1 (MQ=12)
                      tATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACaaaa                                                                                                            >  1:9286951/1‑149 (MQ=255)
                         tAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATTGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTGTTAATTTTAATACTAGACCTACAAAAAtt                                                                                                         <  2:5935420/149‑1 (MQ=25)
                         tAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAAtt                                                                                                         >  2:1697800/1‑149 (MQ=255)
                          aGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAAttt                                                                                                        >  2:200411/1‑149 (MQ=255)
                           gggTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTta                                                                                                       >  1:195315/1‑149 (MQ=255)
                           gggTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTta                                                                                                       >  2:3373302/1‑149 (MQ=255)
                            ggTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTtat                                                                                                      <  2:9162150/149‑1 (MQ=255)
                                ggTATTGAGGTAAGTATTGAGGTTAGTATCGGGGTAAGAATTGAGGTCAGTATTAGGGTTAGTAGTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTGATAAAAAAAAAAAAAAAATTTATAGCt                                                                                                  <  2:7395794/149‑1 (MQ=21)
                                 gTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTa                                                                                                 >  1:8759186/1‑149 (MQ=255)
                                       aGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCttt                                                                                           <  1:9038913/149‑1 (MQ=255)
                                       aGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCttt                                                                                           <  1:4240995/149‑1 (MQ=255)
                                       aGGTCAGTATTGAGGTGAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCttt                                                                                           <  2:7950680/149‑1 (MQ=37)
                                        ggTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTg                                                                                          >  1:2905413/1‑149 (MQ=255)
                                         gTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTga                                                                                         <  2:6368542/149‑1 (MQ=255)
                                             gTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGaaa                                                                                     >  2:7800748/1‑149 (MQ=255)
                                              tATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGaaaa                                                                                    <  1:2742748/149‑1 (MQ=255)
                                              tATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGaaaa                                                                                    >  1:7028118/1‑149 (MQ=255)
                                              tATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGaaaa                                                                                    <  1:7735767/149‑1 (MQ=255)
                                               aTTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGaaaaa                                                                                   <  1:1116958/149‑1 (MQ=255)
                                                 tgtggTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGc                                                                                 <  2:5727201/146‑1 (MQ=37)
                                                 tGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGc                                                                                 <  2:6850036/149‑1 (MQ=255)
                                                  gAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCa                                                                                <  2:7121157/149‑1 (MQ=255)
                                                         gTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACtttt                                                                         <  1:2619907/149‑1 (MQ=255)
                                                            tCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTct                                                                      >  2:5090622/1‑148 (MQ=255)
                                                            tCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCg                                                                      >  1:6581421/1‑149 (MQ=255)
                                                            tCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCg                                                                      >  1:2353399/1‑149 (MQ=255)
                                                             cGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGt                                                                     >  1:578865/1‑149 (MQ=255)
                                                              ggggTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTa                                                                    <  2:3335727/149‑1 (MQ=255)
                                                              ggggTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGGATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCGATGCTTTGAGAAAAAGCAAACTTTTTCGTa                                                                    <  2:5548032/149‑1 (MQ=25)
                                                                ggTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTaaa                                                                  <  1:5132895/149‑1 (MQ=255)
                                                                ggTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTaaa                                                                  >  2:2465879/1‑149 (MQ=255)
                                                                 gtaaatATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGATCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGATATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAg                                                                 <  2:5401031/144‑1 (MQ=25)
                                                                 gTCATTATTGAAGTCAGTATTAGGGTTATTTTTGGTGTAGGTATTAGGGTCAGTATTAAGGTCATTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAg                                                                 <  2:9537508/149‑1 (MQ=25)
                                                                 gTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAg                                                                 >  1:8320116/1‑149 (MQ=255)
                                                                   cAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGat                                                               >  1:4768623/1‑149 (MQ=255)
                                                                     gTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGatat                                                             <  1:6865912/149‑1 (MQ=255)
                                                                     gTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGatat                                                             <  2:726571/149‑1 (MQ=255)
                                                                        ttGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATAcc                                                          >  2:6645172/1‑149 (MQ=255)
                                                                        ttGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATAcc                                                          >  1:3375413/1‑149 (MQ=255)
                                                                         tGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCt                                                         >  1:2123973/1‑149 (MQ=255)
                                                                          gAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTa                                                        <  1:3606043/149‑1 (MQ=255)
                                                                            ggTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTaaa                                                      <  1:8884247/149‑1 (MQ=255)
                                                                               cAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTaaaaaa                                                   >  2:7629652/1‑149 (MQ=255)
                                                                               aaGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTaaaaaa                                                   <  2:4910050/148‑1 (MQ=255)
                                                                                 gTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATg                                                 <  1:7852638/149‑1 (MQ=255)
                                                                                  tATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATga                                                >  2:8813977/1‑149 (MQ=255)
                                                                                  tATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTATTCGTAAAGATATACCTAAAAAATga                                                >  1:5388393/1‑149 (MQ=37)
                                                                                   aTTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATgag                                               >  1:4955937/1‑149 (MQ=255)
                                                                                    ttAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATgaga                                              >  2:8186466/1‑149 (MQ=255)
                                                                                    ttAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATgaga                                              >  1:6314786/1‑149 (MQ=255)
                                                                                     tAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATgagag                                             >  2:4736555/1‑149 (MQ=255)
                                                                                       gggTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGagagag                                           >  1:3004375/1‑149 (MQ=255)
                                                                                        ggTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGc                                          <  2:3856881/149‑1 (MQ=255)
                                                                                          ttAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGt                                        >  2:4328907/1‑149 (MQ=255)
                                                                                           tAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGtt                                       >  1:1451947/1‑149 (MQ=255)
                                                                                            aGTATTGGGGTCGGTATTTGGGTAAGTATTAAGGTCAATATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGtta                                      <  2:1457544/149‑1 (MQ=37)
                                                                                             gTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGttat                                     <  1:1002916/149‑1 (MQ=255)
                                                                                                ttAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTtattat                                  <  2:8343043/149‑1 (MQ=255)
                                                                                                 ttgggTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTattatt                                 <  1:1829382/147‑1 (MQ=255)
                                                                                                 tAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATAAAAAAAAAAAATGAGAGAGCGTTattatt                                 <  2:1065812/149‑1 (MQ=25)
                                                                                                   gggTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTAtttt                               >  2:6126660/1‑149 (MQ=255)
                                                                                                      tCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAAt                            <  1:7558920/149‑1 (MQ=255)
                                                                                                      tCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAAt                            <  2:6798484/149‑1 (MQ=255)
                                                                                                       cGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATc                           <  1:9379618/149‑1 (MQ=255)
                                                                                                       cGGTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATc                           <  2:8985568/149‑1 (MQ=255)
                                                                                                         gTATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGt                         <  1:5964327/149‑1 (MQ=255)
                                                                                                          tATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGtt                        <  2:3682905/149‑1 (MQ=255)
                                                                                                          tATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGtt                        >  2:5201710/1‑149 (MQ=255)
                                                                                                          tATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGtt                        >  1:24846/1‑149 (MQ=255)
                                                                                                          tATTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGtt                        <  2:2699415/149‑1 (MQ=255)
                                                                                                           aTTAGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTa                       >  1:8181420/1‑149 (MQ=255)
                                                                                                              aGGGTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTaaaa                    <  1:8033586/149‑1 (MQ=255)
                                                                                                               gggTCAGTATTAAGGTCAGTATTAAATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAAt                   >  1:8390364/1‑149 (MQ=255)
                                                                                                                 aactgtatgaaggtcagtatgagTTAGAATAATAAATTTTACTACAAGACTTACAAAAATATATAGCCGTCCCTAAAGAAATAGCAAACCTTTTCGTAAAGATATACCTAAAAAATGAGAGACCTTTATTATTTTAATCGTTAAAATta                 <  2:2928675/145‑1 (MQ=255)
                                                                                                                    agtattaaggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATtaaga              >  1:956031/1‑149 (MQ=255)
                                                                                                                     gtattaaggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAACCTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATtaagat             <  2:6044636/149‑1 (MQ=255)
                                                                                                                      tattaaggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATtaagata            <  2:6982754/149‑1 (MQ=255)
                                                                                                                       attaaggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATtaagataa           >  1:393386/1‑149 (MQ=255)
                                                                                                                       attaaggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATtaagataa           >  1:1285042/1‑149 (MQ=255)
                                                                                                                       attaaggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATtaagataa           >  1:46344/1‑149 (MQ=255)
                                                                                                                        ttaaggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATtaagataag          >  1:1662665/1‑149 (MQ=255)
                                                                                                                            ggtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATTAAGATAAGAATc      >  2:4261432/1‑149 (MQ=255)
                                                                                                                             gtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATTAAGATAAGAATCt     <  1:7311784/149‑1 (MQ=255)
                                                                                                                             gtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATTAAGATAAGAATCt     <  2:1209839/149‑1 (MQ=255)
                                                                                                                             gtcagtattaaATAGTATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATTAAGATAAGAATCt     <  1:3735654/149‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                            
TTAGGGTCGGTATTAGGGTCAGTATTAGGGTCGGTATTGAGGTCAGTATTGAGGTTAGTATCGGGGTCAGTATTGAGGTCAGTATTAGGGTTAGTATTAGGGTCGGTATTAGGGTCAGTATTAAGGTCAGTATTAAAGTGATATTATTAATTTTAATACTAGACCTACAAAAATTTATAGCTATGCTTTGAGAAAAAGCAAACTTTTTCGTAAAGATATACCTAAAAAATGAGAGAGCGTTATTATTTTAATCGTTAAAATTAAGATAAGAATCTTTC  >  AM406671/1223418‑1223695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: