| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,318,548 | (A)7→6 | coding (34/348 nt) | llmg_1344 → | hypothetical protein predicted by Glimmer/Critica |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,318,542 | 0 | A | . | 98.4% | 3434.6 / 37.0 | 741 | coding (28/348 nt) | llmg_1344 | hypothetical protein predicted by Glimmer/Critica |
| Reads supporting (aligned to +/- strand): ref base A (0/12); new base . (396/332); total (397/344) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.17e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 788 total aligned reads displayed.
AAGACCCTTAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGAAAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAGGTCT > AM406671/1318394‑1318687 | aggACCCTTAATTTTGAGCTTTATTTTTTATGAACAGAGAGAGATGAGGAGCAGGATATGAAAGCAAAATGAGGAAAGACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGa < 1:8947377/147‑1 (MQ=255) aGACCCTTAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGaa > 1:4647013/1‑149 (MQ=255) aCCCTTAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGaaaa > 2:7512183/1‑149 (MQ=255) ttAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGaaaaaagg > 1:8559894/1‑147 (MQ=255) aaTTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGaaaaaaggca < 2:7433911/149‑5 (MQ=255) aTTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAg < 2:4649141/149‑1 (MQ=255) aTTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAg < 1:36898/149‑1 (MQ=255) tttGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTACACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑ACAAAAGGCAGAt > 1:5054211/1‑149 (MQ=255) tttGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGAt < 1:9299145/149‑1 (MQ=255) tGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGAttt < 1:8035056/149‑1 (MQ=255) gAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTc > 2:5939666/1‑149 (MQ=255) gCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGaaaaaagg < 2:8779938/139‑3 (MQ=255) gCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCt > 1:7019059/1‑149 (MQ=255) tttATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTgg > 2:6749460/1‑149 (MQ=255) tttATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTgg < 1:4935560/149‑1 (MQ=255) tttATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTgg < 1:1567639/149‑1 (MQ=255) ttATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGt > 2:9061514/1‑149 (MQ=255) ttATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGt < 1:719670/149‑1 (MQ=255) tATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTc > 2:1101017/1‑149 (MQ=255) aTTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATGTCCTGGTCa > 1:7781855/1‑149 (MQ=255) tttttATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAgg > 1:5685402/1‑149 (MQ=255) tttttATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAgg < 2:1706612/149‑1 (MQ=255) ataaaaagagATAGATGAGGAGAAGGATATGAAAGCAAAATTAGGAAATAAAATTATAGATTTTTGGAAAATCAGCACCATTAAAACCGAAAATGAACCTTTGGTTCTT‑AAAAAAAAAAAAAAAAGGCAGATTTCCTGGTCAGGCCAAt < 2:6597869/143‑1 (MQ=255) aTGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAAt < 1:7360225/149‑1 (MQ=255) aTGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAAt > 1:7945558/1‑149 (MQ=255) tGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAAtt < 2:4154958/149‑1 (MQ=255) aaCAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTg > 2:2516774/1‑149 (MQ=255) agatagatGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATg > 1:6869593/1‑149 (MQ=255) agatGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGa > 2:7915233/1‑149 (MQ=255) gatGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGAc > 2:8503727/1‑149 (MQ=255) atGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACt < 2:6147632/149‑1 (MQ=255) atGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACt < 1:2983529/149‑1 (MQ=255) aggagCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTgca < 1:1343911/149‑1 (MQ=255) gagCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGTAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTgcaag > 2:3084989/1‑149 (MQ=255) gCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTgcaagca > 1:5190815/1‑149 (MQ=255) gCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTgcaagca < 1:4104177/149‑1 (MQ=255) cAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTgcaagcaa < 1:5493258/149‑1 (MQ=255) aGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGcaagcaag < 2:9556787/149‑1 (MQ=255) atatGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAagcag < 2:4386692/149‑1 (MQ=255) tGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCaa > 2:3845987/1‑149 (MQ=255) aaGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTa > 2:5166250/1‑149 (MQ=255) aGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTaa > 2:5325883/1‑149 (MQ=255) aaaTTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGc < 1:268226/149‑1 (MQ=255) aaaTTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGc > 2:2165804/1‑149 (MQ=255) aaaTTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGc > 1:8722090/1‑149 (MQ=255) aaTTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCt < 2:556580/149‑1 (MQ=255) aTTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTa < 1:1176321/149‑1 (MQ=255) ttAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGTCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCACGCAGCAACTAATAGCTAg > 1:9439187/1‑149 (MQ=255) aGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTg < 1:3914970/149‑1 (MQ=255) gAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGa < 1:2129174/149‑1 (MQ=255) gAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGa > 2:7235055/1‑149 (MQ=255) aTACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGACAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCCACTAATAGCTAGTGGAAta > 1:4322874/1‑148 (MQ=255) aCAATTATAGATTTTTAGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGAc < 2:9417783/149‑1 (MQ=255) aTTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCa > 2:2471781/1‑149 (MQ=255) aTTATAGATTTTTGGAAAAGCAGCACCAATAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGAGTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCa < 2:5804774/149‑1 (MQ=255) ataGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCaaaa < 1:7599601/149‑1 (MQ=255) taGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCaaaaa > 1:7897167/1‑149 (MQ=255) tttttGGAAAATCAGCACCAGTAAACCCGAAAATGACCCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATAtt < 1:3502750/149‑1 (MQ=255) tttttGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATAtt < 2:5015490/149‑1 (MQ=255) tttttGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATAtt < 2:9251996/149‑1 (MQ=255) tGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAACAATATTCAGc > 2:2287252/1‑149 (MQ=255) gAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTg < 1:3812075/149‑1 (MQ=255) aaaaCCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AATAAAGGCAGATTTCCTGGTCAGGCCAATTTTCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTTGAATGTCCCAAAAATATTCAGCGGa < 2:8209173/149‑1 (MQ=255) aaaTCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGAACCAAAAATATTCAGCTGAc > 1:960764/1‑149 (MQ=255) aaTCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGAcc > 1:2261843/1‑149 (MQ=255) gCACCAGTAAACCCGAAAATGAACCTTGNGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACat > 1:5358278/1‑149 (MQ=255) gCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACat < 1:6018552/149‑1 (MQ=255) gCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACat > 1:6591014/1‑149 (MQ=255) aCCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACataa < 2:2862618/149‑1 (MQ=255) ccAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACataat < 2:3578655/149‑1 (MQ=255) ccAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACataat < 1:1792380/149‑1 (MQ=255) cAGTAAACCCGAAAATGAACCTTGGTTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACataata > 2:7755689/1‑149 (MQ=255) aGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAatat < 1:6154898/149‑1 (MQ=255) gTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAAtata > 1:1029137/1‑149 (MQ=255) tAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAg > 1:6716568/1‑149 (MQ=255) aaaCCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAgg > 2:6983152/1‑149 (MQ=255) aaCCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGc > 2:2078398/1‑149 (MQ=255) aCCCGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCa < 1:8436657/149‑1 (MQ=255) cccGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCaa < 1:6347973/149‑1 (MQ=255) cccGAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCaa < 2:8710005/149‑1 (MQ=255) gAAAATGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATga > 2:1907389/1‑149 (MQ=255) aaaaTGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATgag > 1:4829679/1‑149 (MQ=255) aaTGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGAt > 2:4479806/1‑149 (MQ=255) aaTGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGAt < 2:4821982/149‑1 (MQ=255) tGAACCTTTGGTTCTTGAAACCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATaa < 2:6405128/149‑1 (MQ=255) tGAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATaa < 2:3316473/149‑1 (MQ=255) gAACCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATaaa < 1:2516774/149‑1 (MQ=255) aaCCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATaaaa < 2:1241166/149‑1 (MQ=255) aaCCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATaaaa > 2:277210/1‑149 (MQ=255) aCCTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAAt < 1:8177444/149‑1 (MQ=255) ccTTGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATa < 1:3302510/149‑1 (MQ=255) tGGGTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTACTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACtt < 2:3981892/149‑1 (MQ=255) gggTTCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTg > 1:3115230/1‑149 (MQ=255) tCTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGAGAAAATACTTGGAcg > 2:1582715/1‑148 (MQ=255) cTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTg < 1:9200574/149‑1 (MQ=255) cTTGAATCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTg < 2:8951489/149‑1 (MQ=255) aaTCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTa > 1:1935395/1‑149 (MQ=255) aTCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGGTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAg > 1:5860535/1‑149 (MQ=255) aTCCTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAg > 1:8625303/1‑149 (MQ=255) ccTTTG‑AAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAGGt < 1:649957/149‑1 (MQ=255) | AAGACCCTTAATTTTGAGCTTTATTTTTTATGAACAGAGATAGATGAGGAGCAGGATATGAAAGCAAAATTAGGAAATACAATTATAGATTTTTGGAAAATCAGCACCAGTAAACCCGAAAATGAACCTTGGGTTCTTGAATCCTTTGAAAAAAAGGCAGATTTCCTGGTCAGGCCAATTTGCTATGAAGACTGCAAGCAAGCAGCAACTAATAGCTAGTGGAATGACCCAAAAATATTCAGCTGACCAACATAATATAGGCAATGAGATAAAATACTTGGACTGGTTAGGTCT > AM406671/1318394‑1318687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |