| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,921,462 | Δ1 bp | coding (49/660 nt) | llmg_1941 ← | conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,921,461 | 0 | C | . | 99.7% | 4928.5 / 3.2 | 1030 | coding (50/660 nt) | llmg_1941 | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base . (512/514); minor base G (0/3); total (512/518) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.49e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1052 total aligned reads displayed.
CGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATGTTGACCATTAGGCATCTGGGCAAAATTCCGCCATCCACTCCATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATCCCTTTTCAAAAGTTTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACA > AM406671/1921312‑1921607 | ttGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATTcgcc > 2:4664415/1‑146 (MQ=255) tGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATTcgcca > 2:7282883/1‑145 (MQ=255) aCATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATc < 2:9127588/149‑1 (MQ=255) aCATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATc > 1:692866/1‑149 (MQ=255) cATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATcc > 1:9604247/1‑149 (MQ=255) cATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATcc < 1:1642086/149‑1 (MQ=255) aTCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCa < 1:3156763/149‑1 (MQ=255) aTCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGCCAAAATT‑CGCCATCCa > 1:4370658/1‑149 (MQ=255) tCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCAc < 2:4330398/149‑1 (MQ=255) cgccgcCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACt > 1:4794955/1‑149 (MQ=255) gccgccAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACTc > 1:215793/1‑149 (MQ=255) gccgccAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACTc < 2:5917205/149‑1 (MQ=255) ccgccAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACTca < 1:7782253/149‑2 (MQ=255) cgccAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACTcat < 2:6647255/149‑3 (MQ=255) ccAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACTcatta > 1:3550899/1‑145 (MQ=255) cAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTaa > 1:2058675/1‑149 (MQ=255) cAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTaa < 2:9020607/149‑1 (MQ=255) aTGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAg < 1:568326/149‑1 (MQ=255) aTGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCACCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAg < 1:4936205/149‑1 (MQ=255) aCCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAAc > 1:2326840/1‑149 (MQ=255) aaCAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGa < 1:7030834/149‑1 (MQ=255) cAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGaaa > 2:382530/1‑149 (MQ=255) aaaTTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGt > 1:8906174/1‑149 (MQ=255) aaTTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CAAAAAAAAAAAAAAAAATCGAAAGtt < 2:8335213/149‑1 (MQ=255) aTTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTg > 2:3303596/1‑149 (MQ=255) aaTCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACa > 2:401810/1‑149 (MQ=255) aTCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACaa < 1:7520378/149‑1 (MQ=255) aTCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACaa > 2:1233875/1‑149 (MQ=255) aTCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACaa < 1:5794181/149‑1 (MQ=255) aTCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACaa < 1:3719336/149‑1 (MQ=255) ccccAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAAc < 2:2853882/149‑1 (MQ=255) ccccAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAAc > 1:8122685/1‑149 (MQ=255) ccccAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATATGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACaaaa > 2:4466779/1‑148 (MQ=255) cAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACata < 1:100457/149‑1 (MQ=255) aGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACataa < 1:4072626/149‑1 (MQ=255) aGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACataa > 2:2555006/1‑149 (MQ=255) aGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATAAAAGAAAACAAAAATCGAAAGTTGTACAAACataa < 2:1394245/149‑1 (MQ=255) ggTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACataat < 1:4541340/149‑1 (MQ=255) ggTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACataat > 2:9251154/1‑149 (MQ=255) aaaaGGGGAAAATTACTAAACCTGTTTCAATAAAGAAAATCGCTCCTAAAACAACATAAATCAAAATG‑TGAAAATTAGGCATATGGGCAAAATT‑CGCAATCCACT‑CAATAAATAAAACAAAAATCAAAAGTTGTACAAACATAatatta > 2:6444636/1‑147 (MQ=255) aaaGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAatattcc > 1:2983027/1‑146 (MQ=255) aaaGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATtcc > 1:6136955/1‑149 (MQ=255) ggggAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCttt < 2:8019118/149‑1 (MQ=255) gAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCa > 2:3636366/1‑149 (MQ=255) aaaaTTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCaa > 1:7931630/1‑149 (MQ=255) aaaTTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCaaa < 2:6227094/149‑1 (MQ=255) aaTTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAAAAACATAAATCCAAATG‑TGACCACTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CAAAAAAAAAAAAAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCaaaa < 2:5350608/149‑1 (MQ=255) tACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAGtt < 1:333966/149‑1 (MQ=255) tACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAGtt > 1:1949160/1‑149 (MQ=255) tACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAGtt < 2:1773211/149‑1 (MQ=255) aaCTAAACCTGTTTCAATAAAAATAATCGCTCCTAAAACAACACAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CAAAAAAAAAAAAAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAGtt < 2:2776890/148‑1 (MQ=255) aCTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAGtta < 1:8501082/149‑2 (MQ=255) aCTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAGtta > 1:71868/1‑148 (MQ=255) cTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAGttaa < 1:1165750/149‑3 (MQ=255) aaCCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCAATAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATAAAAGAAAAAAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAGTTAaaaa < 2:6781748/149‑1 (MQ=255) ccTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAAtt < 2:2150300/149‑1 (MQ=255) cTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTc < 1:8722477/149‑1 (MQ=255) gTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCtt > 2:5131947/1‑149 (MQ=255) tttCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTa > 1:9253014/1‑149 (MQ=255) tCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACa > 2:8132545/1‑149 (MQ=255) tCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACa > 2:8504398/1‑149 (MQ=255) cAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACag > 2:1511374/1‑149 (MQ=255) aaTAAAGATAATCGCTCCTAAAACAACANAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACagt > 1:5330146/1‑149 (MQ=255) tAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGCCCATGAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATCAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACagtag > 2:2976143/1‑149 (MQ=255) tAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACagtag > 1:3819378/1‑149 (MQ=255) tAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACagtag > 1:2718333/1‑149 (MQ=255) aaGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGtt < 1:6513188/149‑1 (MQ=255) aaGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGtt > 1:5148053/1‑149 (MQ=255) aGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAATCCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTc < 2:3465074/149‑1 (MQ=255) gATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCt > 1:4648324/1‑149 (MQ=255) agaaTCGCTCCTAAAACAACATAAAGCCAAATG‑TGACCATTAGGCATCTGGGCAAAAGT‑CGCCATCCACT‑CAAAAAAAAAAAAAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTg < 2:5677577/147‑1 (MQ=255) tAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGt < 2:761063/149‑1 (MQ=255) aaTCGCTCCGAAAACAACATACATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATAAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGtt < 2:2444791/149‑1 (MQ=255) tCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTa < 2:8585651/149‑1 (MQ=255) tCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTAAAAAAAG‑AAAAAAATTCTTACAGTAGTTCTGTTTa < 2:2031057/149‑1 (MQ=255) gCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACt < 2:7131677/149‑1 (MQ=255) gCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACt < 2:4904627/149‑1 (MQ=255) cTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACtt < 2:109237/149‑1 (MQ=255) tAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAAt > 2:8892938/1‑149 (MQ=255) tAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAAt > 2:7428927/1‑149 (MQ=255) aacaacATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGa < 1:2494559/149‑1 (MQ=255) aacaacATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGa > 2:4829265/1‑149 (MQ=255) aacaacATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGa < 1:7649485/149‑1 (MQ=255) caacaTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAAt > 1:7392066/1‑149 (MQ=255) tAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATa < 1:1417181/149‑1 (MQ=255) aaaTCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATaa < 2:9342308/149‑1 (MQ=255) ccAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAatat > 2:5449067/1‑149 (MQ=255) aatgtGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATAtctc < 1:4192219/145‑1 (MQ=255) tgtGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTa < 2:692956/147‑1 (MQ=255) aCCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTCCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCaa > 2:7850281/1‑149 (MQ=255) ttAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCAc > 1:8370685/1‑149 (MQ=255) aGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTc > 1:548019/1‑149 (MQ=255) ggCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCg < 1:6738022/149‑1 (MQ=255) gCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGt < 1:599734/149‑1 (MQ=255) aTCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTc > 1:1505671/1‑149 (MQ=255) cTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCaa < 1:1769228/149‑1 (MQ=255) ggCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAACGTTGTACACACATAATGTTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAATCACTCGTTCAAttt > 1:9087036/1‑149 (MQ=255) ggCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAACAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAAttt < 2:6072478/149‑1 (MQ=255) gCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAAtttt < 1:6341091/149‑1 (MQ=255) cAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTa > 1:2833990/1‑149 (MQ=255) | CGTTTGACATCGCCGCCAATGAACCAACGAAAAACAAAATTGAATCCCCAGGTAAAAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATGTTGACCATTAGGCATCTGGGCAAAATTCCGCCATCCACTCCATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATCCCTTTTCAAAAGTTTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACA > AM406671/1921312‑1921607 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |