| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 2,183,058 | (A)5→4 | coding (399/1161 nt) | llmg_2218 ← | predicted transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 2,183,054 | 0 | A | . | 99.5% | 5712.7 / 21.0 | 1209 | coding (403/1161 nt) | llmg_2218 | predicted transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (2/4); new base . (634/563); total (639/570) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1286 total aligned reads displayed.
TTAACTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGAAAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCTTGCTG > AM406671/2182906‑2183198 | ttAACTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGa > 1:1659407/1‑149 (MQ=255) tAACTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaa > 1:1842092/1‑149 (MQ=255) aaCTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaaa > 1:1094114/1‑149 (MQ=255) cTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAGAATAATCATCCTTACTTCCATTGATAATATAAGaaaat < 2:3889331/149‑2 (MQ=255) ttttATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaaaatc > 2:1998066/1‑147 (MQ=255) tttATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaaaatcc < 2:8034487/149‑4 (MQ=255) tttATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGaaaatcc > 2:5359110/1‑146 (MQ=255) aTTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGt > 2:1076408/1‑149 (MQ=255) ttCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTc > 1:7683683/1‑149 (MQ=255) cTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCg > 2:4874809/1‑149 (MQ=255) ttGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCgg > 1:9463503/1‑149 (MQ=255) ttGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCgg > 1:527469/1‑149 (MQ=255) tGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGa > 1:7314981/1‑149 (MQ=255) attattCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAAt > 2:8673714/1‑149 (MQ=255) ttattCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAAtg > 2:3579848/1‑149 (MQ=255) attCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATACTATAAG‑AAAATCCTGTTCCGGAAtgtg > 2:9405082/1‑149 (MQ=255) attCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAAtgtg < 1:1013706/149‑1 (MQ=255) attCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAAtgtg > 1:3064562/1‑149 (MQ=255) attCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAAtgtg > 1:9286354/1‑149 (MQ=255) tCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCa > 2:1783219/1‑149 (MQ=255) gCATATTTGTGTGCTTCATTTTGAATCATTTCTACTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCCTTGATAATATAAG‑AAAATCCTGTTCTGGAATGTGAATg > 2:5582366/1‑149 (MQ=255) atatTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAg > 1:4260390/1‑149 (MQ=255) atatTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAg > 1:748822/1‑149 (MQ=255) tatNTGTGTGNTTCATTTTGAATCATTTCTGCTTCCGCAACCTCTTCTCTTAACTGTATCATATTCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTTCATGAGt > 2:1475993/1‑149 (MQ=255) ttGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAAGCAGTTGCTCTAATGAACAAAATAATCATCCTTACTTCCATCGATAATATAAG‑AAAATCCTGTTCCGGACTGTGCATGAGTCCa > 2:6094153/1‑149 (MQ=255) gCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCAtt < 1:4934257/149‑1 (MQ=255) cATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCat < 2:7471125/149‑1 (MQ=255) cATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCat > 1:274166/1‑149 (MQ=255) ttttGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCatca > 1:2275703/1‑149 (MQ=255) ttttGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCatca < 1:6765288/149‑1 (MQ=255) tttGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCa > 2:3229490/1‑145 (MQ=255) gAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCatcaatca > 1:98938/1‑149 (MQ=255) aaTCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATcac > 2:8332678/1‑149 (MQ=255) aaTCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATcac > 2:5698241/1‑149 (MQ=255) aTCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATcaca < 1:5544128/149‑1 (MQ=255) aTTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATTCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCAcatca > 2:1377393/1‑149 (MQ=255) aTTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCAcatca < 2:5905760/149‑1 (MQ=255) tttCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCAcatcat < 1:5776098/149‑1 (MQ=255) ttCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATa < 1:2549322/149‑1 (MQ=255) ttCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATa < 2:2543883/149‑1 (MQ=255) ttCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATa < 1:4354570/149‑1 (MQ=255) tCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATaa < 2:3749214/149‑1 (MQ=255) tGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAgg < 2:4538874/149‑1 (MQ=255) gCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGt > 1:4696000/1‑149 (MQ=255) ttCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAg > 1:8793316/1‑149 (MQ=255) tCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGc > 1:2080749/1‑149 (MQ=255) gCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCaaa < 1:641851/149‑1 (MQ=255) aaCTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAAtt > 2:3428030/1‑149 (MQ=255) ctcttctcttAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAAtttt > 2:2662200/1‑149 (MQ=255) ctcttctcttAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAAtttt > 1:5412514/1‑149 (MQ=255) tcttctcttAACTGTAACATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAAttttt < 1:2843132/149‑1 (MQ=255) cttctcttAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTc > 2:3018431/1‑149 (MQ=255) ctcttAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCAc > 1:7154977/1‑149 (MQ=255) cttAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACtt < 2:3991217/149‑1 (MQ=255) tAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTc < 2:7156217/149‑1 (MQ=255) aaCTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCa > 2:5162956/1‑149 (MQ=255) aCTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCaa > 2:7253169/1‑149 (MQ=255) aCTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCaa > 1:8601327/1‑149 (MQ=255) atatCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTc < 2:7356608/149‑1 (MQ=255) tatCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCa < 1:3460541/149‑1 (MQ=255) atCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCaa > 2:2251779/1‑149 (MQ=255) atCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCaa < 1:2346095/149‑1 (MQ=255) atCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCaa > 2:7880416/1‑149 (MQ=255) tCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCaaa < 2:8817164/149‑1 (MQ=255) tCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCaaa < 2:8200469/149‑1 (MQ=255) aaCCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGa < 2:6923436/149‑1 (MQ=255) cAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACa > 2:4994591/1‑149 (MQ=255) gTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAgg > 1:3537530/1‑149 (MQ=255) tGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGAt > 1:1291791/1‑149 (MQ=255) tGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGAt > 2:4279802/1‑149 (MQ=255) atatAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGAttt < 1:5954353/149‑1 (MQ=255) ataATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTAc > 2:1642072/1‑149 (MQ=255) taATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACt > 2:1273793/1‑149 (MQ=255) aaTGAACAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTc < 2:6705769/149‑1 (MQ=255) aaCAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAAc < 1:3275534/149‑1 (MQ=255) aaCAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAAc < 2:8551486/149‑1 (MQ=255) aaCAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAAc > 1:6193125/1‑149 (MQ=255) aCAAAATAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACt > 1:9125716/1‑149 (MQ=255) aaaaTAATCATCCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTTTATTTTCTTATAGCTTCAAACGAACAGGATTTACTCCAACTgg > 2:5821051/1‑149 (MQ=255) tcCTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATaaaaaaa > 2:6549976/1‑149 (MQ=255) ccTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAat > 1:4047344/1‑149 (MQ=255) ccTTACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAat < 1:8092604/149‑1 (MQ=255) ttACTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAatca < 1:8969152/149‑1 (MQ=255) tACTTCCATTAATAATATAAG‑AAAATCCTGTTCCGAAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATATTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAatcat < 2:6367344/149‑1 (MQ=255) aCTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAatcatc < 1:5146304/149‑1 (MQ=255) cTTCCATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAAtcatca > 1:4533729/1‑149 (MQ=255) ccATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGa > 1:367758/1‑149 (MQ=255) cATTGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGAt < 1:7016204/149‑1 (MQ=255) ttGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAg < 1:7889258/149‑1 (MQ=255) ttGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAg > 2:2819690/1‑149 (MQ=255) ttGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAg > 2:9296823/1‑149 (MQ=255) tGATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGc < 1:9531214/149‑1 (MQ=255) gATAATATAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGcc > 1:1522848/1‑149 (MQ=255) aataataTAAG‑AAAATCCTGTTCCGGAAAGAGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTACAAATAGAATAAAAAAATCATCACGATAGcc < 2:4734378/148‑1 (MQ=255) ataataTAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCt < 1:6539976/149‑1 (MQ=255) taataTAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCtt > 1:6935921/1‑149 (MQ=255) atatAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCTTGc > 2:7666396/1‑149 (MQ=255) atatAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCTTGc > 2:8989554/1‑149 (MQ=255) atatAAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCTTGc > 1:388776/1‑149 (MQ=255) tataAG‑AAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCTTGCt > 1:8417/1‑149 (MQ=255) | TTAACTTTTATTTCTTGATTATTCGCATATTTGTGTGCTTCATTTTGAATCATTTCTGCTTCCGCAAACTCTTCTCTTAACTGTATCATATCCAACCAGTTGATATAATGAACAAAATAATCATCCTTACTTCCATTGATAATATAAGAAAAATCCTGTTCCGGAATGTGCATGAGTCCAAGCATTGCATCAATCACATCATAAGGTAGCAAAATTTTTCCACTTTCAAATAGCTTCAAACGAACAGGATTTACTCCAACTGGAATAAAAAAATCATCACGATAGCCTTGCTG > AM406671/2182906‑2183198 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |