| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 894,627 | +G | coding (1044/1062 nt) | llmg_0924 → | conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 894,624 | 1 | . | G | 97.9% | 3687.3 / 51.6 | 954 | coding (1041/1062 nt) | llmg_0924 | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (9/11); new base G (449/484); total (459/495) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1024 total aligned reads displayed.
CAAGTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑G‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGTTTA > AM406671/894476‑894767 | cAAGTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCt < 1:148612/149‑1 (MQ=255) gTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑g‑gg > 1:6100306/1‑149 (MQ=255) taaattaaatTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTATAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑g‑ggg < 1:5782861/149‑2 (MQ=255) attaaattCGACGGATGTAACAGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑g‑gggaag < 2:2704260/149‑5 (MQ=255) attaaattCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑g‑gggaag > 2:4767104/1‑145 (MQ=255) ttaaattCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑g‑gggaaga < 1:5985869/149‑6 (MQ=255) taaattCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑Ggaagaa > 1:7377404/1‑149 (MQ=255) aaattCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGaagaag > 2:4908093/1‑149 (MQ=255) ttCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGt < 1:3849516/149‑1 (MQ=255) gAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAg < 1:6518821/149‑1 (MQ=255) aGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGAt < 1:3661512/149‑1 (MQ=255) tGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTag < 2:3953908/149‑1 (MQ=255) tAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTagaa < 1:870497/149‑1 (MQ=255) tAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTagaa < 2:8690414/149‑1 (MQ=255) cGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTagaaaaa > 1:2609159/1‑149 (MQ=255) cGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTAGTAATTCTTTTGGCTCTTTTCTGCTTATTCTTTAGGTTATGGAAGAGACGTAGAAGGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTagaaaga > 2:6927664/1‑147 (MQ=255) aaaaaCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAAt < 1:2655814/149‑1 (MQ=255) aaaaaCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAAt < 1:7245731/149‑1 (MQ=255) aCTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGaa > 2:1150555/1‑149 (MQ=255) aCTCCTTGGTATGAAAATTGGCTTATATGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGaa < 2:1741592/149‑1 (MQ=255) cTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGaaa < 2:648300/149‑1 (MQ=255) cTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGaaa < 1:214871/149‑1 (MQ=255) tCCTTGGTATGAAAATTGGATTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAg < 1:4673104/149‑1 (MQ=255) ccTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGc > 2:497534/1‑149 (MQ=255) cTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCt < 1:7618779/149‑1 (MQ=255) gTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATAAAAAAAAAAAAAAATTGAAAGCTCAAc < 2:4124650/149‑1 (MQ=255) tATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACt < 1:8455743/149‑1 (MQ=255) tGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTg < 2:2066029/149‑1 (MQ=255) aaaaTTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGaa < 2:6781467/149‑1 (MQ=255) aaaaTTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGaa > 2:8108621/1‑149 (MQ=255) aTTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCt < 1:6370264/149‑1 (MQ=255) ttGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTa > 1:4836053/1‑149 (MQ=255) gCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATga > 2:4635719/1‑149 (MQ=255) aTCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGc > 1:4492782/1‑149 (MQ=255) ggTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTATTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGAAAAAAAAAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACaa < 2:4481378/149‑1 (MQ=255) gCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACaaataaat > 1:9603658/1‑149 (MQ=255) gCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACaaataaat > 2:375526/1‑149 (MQ=255) gCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACaaataaat < 1:8839568/149‑1 (MQ=255) gCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACaaataaat > 1:8336479/1‑149 (MQ=255) cTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAaataaata < 1:2756355/149‑1 (MQ=255) tattattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAAtaaataaa < 1:4341730/149‑1 (MQ=255) tattattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAAtaaataaa > 2:58796/1‑149 (MQ=255) ttattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGa < 1:1627730/149‑1 (MQ=255) tattaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGat > 2:8557670/1‑149 (MQ=255) attaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGata > 1:1135970/1‑149 (MQ=255) ttaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGataa > 1:7786343/1‑149 (MQ=255) ttaATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGataa > 1:3429889/1‑149 (MQ=255) taATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGataat > 2:6151649/1‑149 (MQ=255) taATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGataat > 2:7735520/1‑149 (MQ=255) taATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGATGG‑GGAAGAAGAGTTATATTTAGAAAAAGAAAAATTGACAGCTCAACTTGAAGCTATTAACGCACAAATAAATAAAGataat > 2:9326866/1‑149 (MQ=255) ttCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATaataat < 1:1835244/149‑1 (MQ=255) tCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAAtt > 1:7079557/1‑149 (MQ=255) tCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAAtt > 1:6737622/1‑149 (MQ=255) cTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTc < 2:2885455/149‑1 (MQ=255) cTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTc < 2:9527383/149‑1 (MQ=255) tttAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACaaa < 1:6894691/128‑1 (MQ=255) aGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATg > 2:8360083/1‑149 (MQ=255) ctctTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATggg < 1:2504041/149‑1 (MQ=255) ctTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGAc > 2:9161385/1‑149 (MQ=255) ctTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGAc > 1:2355441/1‑149 (MQ=255) ctTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGAc < 1:3221179/149‑1 (MQ=255) ttttCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACa < 1:1337039/149‑1 (MQ=255) tttCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATATAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAg < 2:5310553/149‑1 (MQ=255) cttcttATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGata > 2:2222805/1‑149 (MQ=255) ttcttATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGatat > 2:3116610/1‑149 (MQ=255) cttATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATAttt > 1:6255492/1‑149 (MQ=255) tATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAg > 1:3089781/1‑149 (MQ=255) aTTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAgg < 1:5573423/149‑1 (MQ=255) ttCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGa > 1:4966198/1‑149 (MQ=255) tCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGAt < 2:547953/149‑1 (MQ=255) tCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGAt < 2:192645/149‑1 (MQ=255) tttattttatGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAAATCTGATGGGACAGATATTTAGGATCt > 2:7145802/1‑149 (MQ=255) tattttatGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTAc > 2:340885/1‑149 (MQ=255) attttatGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACt > 1:9066553/1‑149 (MQ=255) ttttatGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACtt < 1:4062412/149‑1 (MQ=255) tatGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGa < 1:2991565/149‑1 (MQ=255) tatGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGa > 1:9438098/1‑149 (MQ=255) tatGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGAATTAAAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGa > 2:4278845/1‑149 (MQ=255) atGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAt > 2:7276139/1‑149 (MQ=255) atGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAt < 1:1011269/149‑1 (MQ=255) atGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAt < 2:1522638/149‑1 (MQ=255) atGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAt < 1:5221072/149‑1 (MQ=255) tGGAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAtt < 1:9325896/149‑1 (MQ=255) gAAGAGACGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGAtttt > 2:6320517/1‑149 (MQ=255) gagaCGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTa > 2:7585942/1‑149 (MQ=255) gaCGTAAAAAGGAAGAAGAGGCT‑GCGGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATATTAATTCTGATGGGACAGATATTTAGGATCTACTGAGAGTTTCTAAt < 2:8803031/149‑1 (MQ=255) aaagTAAAAAGGAAAAAGAGGCTGG‑GGAAGAATAGTAAGATAAAGAAAAAAAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAAt < 2:6611039/146‑1 (MQ=255) aCGTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAAtt > 2:5156029/1‑149 (MQ=255) gTAAAAAGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTAt < 2:352201/149‑1 (MQ=255) aaaaaGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGa < 1:5693871/149‑1 (MQ=255) aaaaaGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGa < 1:8560499/149‑1 (MQ=255) aaaaGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGat < 2:7900313/149‑1 (MQ=255) aaaaGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGat < 1:9155208/149‑1 (MQ=255) aaaGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGatat < 1:8071263/117‑1 (MQ=255) aGGAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGattat > 2:5712213/1‑149 (MQ=255) ggAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCt < 2:2446226/136‑1 (MQ=255) ggAAGAAGAGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGattatt > 2:8957872/1‑149 (MQ=255) agaagaGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTAc < 1:5107874/149‑1 (MQ=255) agaagaGGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTAc < 1:2035531/149‑1 (MQ=255) gagGCTGG‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGatt > 2:1327132/1‑149 (MQ=255) | CAAGTAAATTAAATTCGAAGGATGTAACGGTTAAAAAAACTCCTTGGTATGAAAATTGGCTTATCTGGTTAGGCTTATTATTAATTCTTTTAGCTCTTTTCTTCTTATTCTTTATTTTATGGAAGAGACGTAAAAAGGAAGAAGAGGCT‑G‑GGAAGAAGAGTAAGATTTAGAAAAAGAAAAATTGAAAGCTCAACTTGAAGCTATGAGAGCACAAATAAATAAAGATAATAATTCTGATGGGACAGATATTTAGGATCTACTTAGATTTTCTAATTATGATTATTTACGTTTA > AM406671/894476‑894767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |