Predicted mutation
evidence seq id position mutation annotation gene description
RA AM406671 1,093,299 +C coding (3979/4050 nt) llmg_1127 → cell wall surface anchor family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM4066711,093,2991.C99.6% 3067.8 / 0.5 766coding (3979/4050 nt)llmg_1127cell wall surface anchor family protein
Reads supporting (aligned to +/- strand):  ref base . (1/2);  new base C (305/458);  total (306/460)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 792 total aligned reads displayed.

TCCTAACGCTCCATTGACAATCACTGCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACTGTCCGCAGGTACTTACACAGTAACTTATTCA  >  AM406671/1093151‑1093441
                                                                                                                                                     |                                                                                                                                               
      cGCTCCATTGACAATCACTGCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACg                                                                                                                                           >  1:8113923/1‑149 (MQ=255)
         tCCATTGACAATCACTGCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCaa                                                                                                                                        <  2:5512067/149‑1 (MQ=255)
          ccATTGACAATCACTGCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAAc                                                                                                                                       >  1:8902369/1‑149 (MQ=255)
          ccATTGACAATCACTGCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAAc                                                                                                                                       <  1:5939081/149‑1 (MQ=255)
             ttGACAATCACTGCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCGGACGCAACAGt                                                                                                                                    >  2:2065253/1‑149 (MQ=255)
                aCAATCACTGCAACAGATGGTTCAGGCANTGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAg                                                                                                                                 >  1:5354092/1‑149 (MQ=255)
                aCAATCACTGCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAg                                                                                                                                 >  2:5991428/1‑149 (MQ=255)
                aCAATCACTGCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAg                                                                                                                                 <  2:49013/149‑1 (MQ=255)
                 cAATCACTGCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGt                                                                                                                                <  2:1295678/149‑1 (MQ=255)
                    tCACTGCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGCTAGTCTa                                                                                                                             >  1:2856961/1‑149 (MQ=255)
                     cACTGCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTAc                                                                                                                            <  1:4645449/149‑1 (MQ=255)
                      aCTGCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTAcc                                                                                                                           <  1:3624102/149‑1 (MQ=255)
                        tGCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAACAAGGTGGAGCTGACGGAACAGTTAGTCTACCTg                                                                                                                         >  2:5168219/1‑149 (MQ=38)
                        tGCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTg                                                                                                                         >  2:322150/1‑149 (MQ=255)
                        tGCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTg                                                                                                                         <  1:3268609/149‑1 (MQ=255)
                         gCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGc                                                                                                                        <  2:1126899/149‑1 (MQ=255)
                         gCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGc                                                                                                                        >  1:8505618/1‑149 (MQ=255)
                          cAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCt                                                                                                                       >  2:8933910/1‑149 (MQ=255)
                          cAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCt                                                                                                                       <  1:1094685/149‑1 (MQ=255)
                            aCAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTac                                                                                                                     >  1:1234560/1‑149 (MQ=255)
                                 tGGTTCAGGCAATGTCAGTGACCCAACCTTAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCGCCAGCAGGTAATTTAACTGCGACCACTTCGAAAAAAGGTGCAGCTGACGCAACAGCTAGTCTACCTGCTACACTTa                                                                                                                <  2:4366015/149‑1 (MQ=21)
                                 tGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTa                                                                                                                <  1:7301080/149‑1 (MQ=255)
                                 tGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTa                                                                                                                >  2:5708082/1‑149 (MQ=255)
                                   gTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTaaa                                                                                                              >  1:3957905/1‑149 (MQ=255)
                                    ttCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAg                                                                                                             <  2:1556871/149‑1 (MQ=255)
                                     tCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGa                                                                                                            <  1:5210753/149‑1 (MQ=255)
                                      cAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGAt                                                                                                           >  1:6834994/1‑149 (MQ=255)
                                      cAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGAt                                                                                                           <  2:6658185/149‑1 (MQ=255)
                                       aGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATa                                                                                                          >  2:2957924/1‑149 (MQ=255)
                                       aGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATa                                                                                                          <  1:9430346/149‑1 (MQ=255)
                                        ggCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAg                                                                                                         >  1:5018657/1‑149 (MQ=255)
                                             tGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAg                                                                                                    <  2:5010813/149‑1 (MQ=255)
                                              gTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAgg                                                                                                   >  1:1579849/1‑149 (MQ=255)
                                               tCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGt                                                                                                  <  1:4219602/149‑1 (MQ=255)
                                               tCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGt                                                                                                  <  1:6648859/149‑1 (MQ=255)
                                               tCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGt                                                                                                  <  1:8259549/149‑1 (MQ=255)
                                                 aGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTaa                                                                                                <  2:2349100/149‑1 (MQ=255)
                                                  gTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTaaa                                                                                               <  1:7764503/149‑1 (MQ=255)
                                                  gTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTaaa                                                                                               >  1:8345385/1‑149 (MQ=255)
                                                       ccAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGt                                                                                          <  2:7782746/149‑1 (MQ=255)
                                                       ccAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGt                                                                                          <  2:6836091/149‑1 (MQ=255)
                                                        cAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTa                                                                                         <  1:2060551/149‑1 (MQ=255)
                                                         aaCCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTa                                                                                                                      >  2:8823080/1‑119 (MQ=255)
                                                         aaCCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTAc                                                                                        >  2:2557286/1‑149 (MQ=255)
                                                         aaCCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTAc                                                                                        <  1:8797675/149‑1 (MQ=255)
                                                          aCCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTAcc                                                                                       >  1:2600413/1‑149 (MQ=255)
                                                            cTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCgg                                                                                     <  2:6977375/149‑1 (MQ=255)
                                                            cTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGCTAGTCTACCTGCTACACTTAAAGATAGTGATGGTAAAACTGtttcgg                                                                                     <  2:3912858/149‑6 (MQ=17)
                                                             tCAGCGACAACACCAGCAGGCCCGGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCGGACGCAACAGTTAGTCTACCTGCTACACTTAGAGATAGTGAAGGTAAAACTGTACCGGt                                                                                    <  2:4129802/149‑1 (MQ=21)
                                                             tCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGt                                                                                    <  2:1888617/149‑1 (MQ=255)
                                                             tCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGt                                                                                    <  1:1342818/149‑1 (MQ=255)
                                                              cAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGtt                                                                                   >  2:764133/1‑149 (MQ=255)
                                                               aGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTa                                                                                  >  1:4837557/1‑149 (MQ=255)
                                                                gCGACAACACCAGCAGACCCAGTTAGGCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTAc                                                                                 <  2:8624343/149‑1 (MQ=255)
                                                                 cGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACt                                                                                >  1:413017/1‑149 (MQ=255)
                                                                    caacaCCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCAt                                                                             <  2:943323/149‑1 (MQ=255)
                                                                       cacCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTa                                                                          <  1:6506558/149‑1 (MQ=255)
                                                                        acCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTaa                                                                         <  1:3499295/149‑1 (MQ=255)
                                                                        acCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTaa                                                                         <  2:7375304/149‑1 (MQ=255)
                                                                          cagcagACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAAtt                                                                       >  2:4478830/1‑149 (MQ=255)
                                                                           agcagACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTATCGGTTACTCATGTAATTa                                                                      >  1:9022013/1‑149 (MQ=255)
                                                                             cagACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTAcc                                                                    <  1:7909622/149‑1 (MQ=255)
                                                                              agACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCa                                                                   >  1:447433/1‑149 (MQ=255)
                                                                                aCCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTa                                                                                         >  1:1738502/1‑125 (MQ=255)
                                                                                aCCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAAc                                                                 <  2:4599456/149‑1 (MQ=255)
                                                                                aCCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGCTAGTCTACCTGCTACACTTAAAGATAGTGATGGTAAAACTGtt                                                                                         <  2:1738502/125‑2 (MQ=14)
                                                                                  ccAGTTAGTCCCGTATTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTc                                                               <  2:7473112/149‑1 (MQ=255)
                                                                                   cAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTca                                                              >  2:3565682/1‑149 (MQ=255)
                                                                                           cccGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAAt                                                      >  1:2415129/1‑149 (MQ=255)
                                                                                            ccGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATg                                                     <  1:6287890/149‑1 (MQ=255)
                                                                                             cGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATgg                                                    <  1:959101/149‑1 (MQ=255)
                                                                                             cGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGCTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATgg                                                    >  2:6278003/1‑149 (MQ=255)
                                                                                              gTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGgt                                                   <  2:2792136/149‑1 (MQ=255)
                                                                                               ttttAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGgta                                                  <  1:9112676/149‑1 (MQ=255)
                                                                                                tttAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGCTAGTCTACCTGCTACACTTAAAGATAGTGatg                                                                                                    <  2:7940057/98‑3 (MQ=11)
                                                                                                 ttAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGgtagt                                                <  1:7073609/149‑1 (MQ=255)
                                                                                                   aGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTAc                                              <  1:7434088/149‑1 (MQ=255)
                                                                                                   aGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGCTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTAc                                              >  1:6911451/1‑149 (MQ=255)
                                                                                                     tGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCg                                            >  1:928034/1‑149 (MQ=255)
                                                                                                       gCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGaa                                          >  1:6182486/1‑149 (MQ=255)
                                                                                                             aCAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCaa                                    >  2:3400101/1‑149 (MQ=255)
                                                                                                             aCAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCaa                                    >  1:3753733/1‑149 (MQ=255)
                                                                                                                   aaTTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACTGTc                              >  1:3824583/1‑149 (MQ=255)
                                                                                                                    aTTTAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTATCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACTGTc                              >  1:1000096/1‑148 (MQ=255)
                                                                                                                     tttAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACTGTCCg                            >  2:9545913/1‑149 (MQ=255)
                                                                                                                      ttAACTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACTGTCCGc                           <  2:3795234/149‑1 (MQ=255)
                                                                                                                        aaCTGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACTGTCCGCAg                         <  2:7897711/149‑1 (MQ=255)
                                                                                                                           tGCGACCACTTCTAAAAAAGGTGCAGCTGACGCAACAGt                                                                                                                                    >  1:2239211/1‑39 (MQ=11)
                                                                                                                                ccACTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACTGTCCGCAGGTACTTac                 >  1:7573863/1‑149 (MQ=255)
                                                                                                                                  aCTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACTGTCCGCAGGTACTTacac               >  1:3061610/1‑149 (MQ=255)
                                                                                                                                  aCTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACTGTCCGCAGGTACTTacac               <  1:5516158/149‑1 (MQ=255)
                                                                                                                                   cTTCTAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTATCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACTGTCCGCAGGTACTTAcaca              <  2:8337942/149‑1 (MQ=255)
                                                                                                                                    ttCTAAAAAAGGTGCAGCTGTCGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACTGTCCGCAGGTACTTACACAg             <  2:6155060/149‑1 (MQ=255)
                                                                                                                                       tAAAAAAGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACTGTCCGCAGGTACTTACACAGTaa          <  2:7186298/149‑1 (MQ=255)
                                                                                                                                        aaaaaaGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAATTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACTGTCCGCAGGTACTTACACAGTAAc         <  2:5350594/149‑1 (MQ=255)
                                                                                                                                            aaGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACt                                 <  2:9034428/121‑1 (MQ=255)
                                                                                                                                            aaGGTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACTGTCCGCAGGTACTTACACAGTAACTTAt     >  2:8074852/1‑149 (MQ=255)
                                                                                                                                             aGGTGCAGCGGCCGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCGGCAGGAATGGTAGTACGGAATGGCAAACGGTCCGCAGGTACTTACACAGTAACTTAtt    <  2:6506583/149‑1 (MQ=14)
                                                                                                                                              ggTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACTGTCCGCAGGTACTTACACAGTAACTTATTc   >  2:919595/1‑149 (MQ=255)
                                                                                                                                               gTGCAGCTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACTGTCCGCAGGTACTTac                 >  1:562437/1‑134 (MQ=255)
                                                                                                                                                     |                                                                                                                                               
TCCTAACGCTCCATTGACAATCACTGCAACAGATGGTTCAGGCAATGTCAGTGACCCAACCTCAGCGACAACACCAGCAGACCCAGTTAGTCCCGTTTTAGTGGCCCCAACAGGTAATTTAACTGCGACCACTTCTAAAAAAGGTGCAGTGACGCAACAGTTAGTCTACCTGCTACACTTAAAGATAGTGAAGGTAAAACTGTACCGGTTACTCATGTAATTACCAACTCAGCAGGAATGGTAGTACCGAATGGCAAACTGTCCGCAGGTACTTACACAGTAACTTATTCA  >  AM406671/1093151‑1093441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: