Predicted mutation
evidence seq id position mutation annotation gene description
RA AM406671 1,826,465 (T)6→7 intergenic (‑23/+300) llmg_1845 ← / ← cspB metal‑dependent hydrolase/cold shock‑like protein cspB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM4066711,826,4591.T97.2% 3696.7 / 71.5 948intergenic (‑17/+306)llmg_1845/cspBmetal‑dependent hydrolase/cold shock‑like protein cspB
Reads supporting (aligned to +/- strand):  ref base . (11/16);  new base T (437/483);  total (449/499)
Fisher's exact test for biased strand distribution p-value = 5.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1036 total aligned reads displayed.

AAGCTCAGTCACCGCACGAGACCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGATACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCAGTATCAACACTTTAATTATAAC  >  AM406671/1826311‑1826602
                                                                                                                                                     |                                                                                                                                                 
aaGCTCAGTCACCGCACGAGACCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTa                                                                                                                                                    <  1:7336494/149‑1 (MQ=255)
 aGCTCAGTCACCGCACGAGACCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTGATTTCATTTTTTTCTCTCTTTCTAt                                                                                                                                                  <  2:5242870/149‑1 (MQ=255)
 aGCTCAGTCACCGCACGAGACCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTAt                                                                                                                                                  <  1:6770634/149‑1 (MQ=255)
  gCTCAGTCACCGCACGAGACCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTAtt                                                                                                                                                 <  1:1537872/149‑1 (MQ=255)
   cTCAGTCACCGCACGAGACCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTAttt                                                                                                                                                <  1:7544316/149‑1 (MQ=255)
    tCAGTCACCGCACGAGACCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTAtttt                                                                                                                                               <  2:5494011/149‑1 (MQ=255)
     cAGTCACCGCACGAGACCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTAttttt                                                                                                                                              >  2:8567876/1‑149 (MQ=255)
     cAGTCACCGCACGAGACCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTAttttt                                                                                                                                              <  1:4457766/149‑1 (MQ=255)
      aGTCACCGCACGAGACCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTAtttttt                                                                                                                                            >  1:3786598/1‑149 (MQ=255)
          aCCGCACGAGACCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTAtttttttctt                                                                                                                                        <  2:5819061/149‑5 (MQ=255)
          aCCGCACGAGACCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTAtttttttctt                                                                                                                                        >  2:2636367/1‑145 (MQ=255)
           ccGCACGAGACCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTACCGCTGTTAATTTCATTTTTTTCTCTCTTTCCAtttttttctta                                                                                                                                       >  1:1927982/1‑144 (MQ=255)
            cGCACGAGACCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTaa                                                                                                                                      <  2:1985953/149‑1 (MQ=255)
               aCGAGACCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGCTTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTc                                                                                                                                   <  2:3451453/149‑1 (MQ=255)
                 gagaCCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCta                                                                                                                                 <  1:4874733/149‑1 (MQ=255)
                  agaCCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCtat                                                                                                                                <  1:1028485/149‑1 (MQ=255)
                   gaCGCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATGAGAAGTTGTTCCTGCATCACTGGTGGGGTACCCTCCCCAAGCACCTAGCGCTGTTAGTTTCATTTTTTTCTTTCTTGCTATTTTTTTTTTGATTCtatt                                                                                                                               >  2:1619805/1‑149 (MQ=255)
                    aCCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCtatta                                                                                                                              <  1:8037445/149‑1 (MQ=255)
                    aCCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCtatta                                                                                                                              >  1:3433285/1‑149 (MQ=255)
                     cccGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCtattat                                                                                                                             <  1:9389183/149‑1 (MQ=255)
                      ccGAAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCGTCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATtata                                                                                                                            <  2:6281477/149‑1 (MQ=255)
                       cGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAg                                                                                                                           <  1:2382620/149‑1 (MQ=255)
                       cGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGAGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAg                                                                                                                           >  1:6022119/1‑149 (MQ=255)
                        gCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGt                                                                                                                          <  1:3081044/149‑1 (MQ=255)
                         cAGTCTAAACGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGtt                                                                                                                         <  2:3334542/149‑1 (MQ=255)
                         cAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGtt                                                                                                                         >  2:7625062/1‑149 (MQ=255)
                            tCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTTTAGTTCaa                                                                                                                      >  2:8071707/1‑149 (MQ=255)
                            tCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCaa                                                                                                                      <  2:3052696/149‑1 (MQ=255)
                             cTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCaaa                                                                                                                     <  1:1719208/149‑1 (MQ=255)
                              tAAAAGCATGATGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTACTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAg                                                                                                                    >  2:7400505/1‑149 (MQ=255)
                                  aGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTATCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCAcc                                                                                                                <  2:1038482/149‑1 (MQ=255)
                                     aTGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTTTTAATTCTATTATAGTTCAAAGCATCTTa                                                                                                             >  2:9398777/1‑149 (MQ=255)
                                     aTGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTa                                                                                                             <  2:1788463/149‑1 (MQ=255)
                                       gTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTGCTCCATCACGAGTGGGGTAGACTCCCCAAACATCTAGCGCTGTGAATTTCATTTCTTTCTCTTTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAAt                                                                                                           <  2:6930135/149‑1 (MQ=255)
                                       gTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTCATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAAt                                                                                                           <  1:5772765/149‑1 (MQ=255)
                                       gTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAAt                                                                                                           >  1:7656817/1‑149 (MQ=255)
                                        ttGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATc                                                                                                          <  2:3999588/149‑1 (MQ=255)
                                          gAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCtt                                                                                                        <  1:6545992/149‑1 (MQ=255)
                                           aaGCCAGACTCCGATAGTAAAAGCTAAGAACTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTCCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCACAGCACCTTAATCTTa                                                                                                       >  2:4282335/1‑149 (MQ=255)
                                              ccAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTg                                                                                                    <  2:6429095/149‑1 (MQ=255)
                                              ccAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTg                                                                                                    >  2:8865241/1‑149 (MQ=255)
                                               cAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGc                                                                                                   >  1:7915008/1‑149 (MQ=255)
                                               cAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGc                                                                                                   <  2:7233433/149‑1 (MQ=255)
                                                 gACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTa                                                                                                 >  1:8299364/1‑149 (MQ=255)
                                                  aCTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTCTCTTCATTTTATTTTCTTTCAGATAACCTTCATCTTGGTGCtct                                                                                                >  2:2172256/1‑147 (MQ=255)
                                                     ccGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACg                                                                                             >  1:2266227/1‑149 (MQ=255)
                                                       gATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTc                                                                                           <  2:2814455/149‑1 (MQ=255)
                                                        aTTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTACTCTTAGTGGTAGACGccc                                                                                          >  1:4335455/1‑149 (MQ=255)
                                                         ttGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCt                                                                                         >  2:5070541/1‑149 (MQ=255)
                                                            tAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCtata                                                                                      <  1:2861899/149‑1 (MQ=255)
                                                             aaaaGATAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTatat                                                                                     <  1:4723994/149‑1 (MQ=255)
                                                                  aTAAGAAGTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTc                                                                                >  1:6329875/1‑149 (MQ=255)
                                                                    aagaagTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTa                                                                              <  1:7134336/149‑1 (MQ=255)
                                                                    aagaagTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTa                                                                              >  2:4465485/1‑149 (MQ=255)
                                                                     agaagTTGTTCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTaa                                                                             <  1:3202718/149‑1 (MQ=255)
                                                                          ttgttCCTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGc                                                                        <  1:5062039/149‑1 (MQ=255)
                                                                              cccTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACtt                                                                    <  2:1138986/148‑1 (MQ=255)
                                                                               ccTGCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTa                                                                   <  1:5183991/149‑1 (MQ=255)
                                                                                  gCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATcc                                                                <  1:3850783/149‑1 (MQ=255)
                                                                                  gCATCACGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATcc                                                                >  2:388716/1‑149 (MQ=255)
                                                                                       aCGAGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCACTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTc                                                           >  1:7772252/1‑149 (MQ=255)
                                                                                          aGTGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAAt                                                        <  1:362364/149‑1 (MQ=255)
                                                                                            tGGGGTACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATta                                                      >  2:8677732/1‑149 (MQ=255)
                                                                                              gggtACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATtata                                                    <  1:5548217/146‑1 (MQ=255)
                                                                                               ggtACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATaa                                                   <  1:2085578/147‑1 (MQ=255)
                                                                                                gtACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATaaa                                                  <  2:1899446/148‑1 (MQ=255)
                                                                                                  aCCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACt                                                <  2:2323233/149‑1 (MQ=255)
                                                                                                    ccTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTtc                                              <  1:2213584/149‑1 (MQ=255)
                                                                                                     cTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTtct                                             <  2:8226080/149‑1 (MQ=255)
                                                                                                      tCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTtctc                                            <  1:2648281/149‑1 (MQ=255)
                                                                                                      tCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTAGTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAACTGGCACTTATCCACTTCAATTATAAACTtctt                                            >  2:4920347/1‑148 (MQ=255)
                                                                                                             acacCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCaaaaa                                     >  1:1273953/1‑149 (MQ=255)
                                                                                                               acCTAGCGCTGTTAATTTCATTTTTTTTTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGt                                   >  2:954016/1‑149 (MQ=255)
                                                                                                               acCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGt                                   <  2:6100989/149‑1 (MQ=255)
                                                                                                                 cTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTgg                                 >  2:8326985/1‑149 (MQ=255)
                                                                                                                   aGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCa                               >  1:6877553/1‑149 (MQ=255)
                                                                                                                      gcTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCAttt                            <  1:9540882/149‑1 (MQ=255)
                                                                                                                          ttAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCa                        <  1:8534949/149‑1 (MQ=255)
                                                                                                                           tAATTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCAg                       >  1:9232377/1‑149 (MQ=255)
                                                                                                                            aaTTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCAGt                      >  2:7775651/1‑149 (MQ=255)
                                                                                                                             aTTTCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTACTCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACAACAATCAAAAAGTGGCATTTACCAGTa                     <  2:1358695/149‑1 (MQ=255)
                                                                                                                             aTTTCATTTTTTTCTCTCTGTCTATTTTTTTCTTAATTCTATTATAGTTCACAGCACCTTAATCTGAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAAAAACACAAAAAAAGTGGCATTTACCAGTa                     <  2:6776769/149‑1 (MQ=255)
                                                                                                                               ttCATTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCAGTATc                   >  1:8849475/1‑149 (MQ=255)
                                                                                                                               cattttttttttttttttTCTTTTTTTATCACTTCTATTATATTTCAAAGCACTTTAATCTTTGTGCTTGGTGTCCTCTCTCATTCTAATTTTCTTTTCTCTTCTTCAATTATAAACTTCTCTCCACAATTTGCATTTACCACTATCaa                 >  2:4088088/5‑149 (MQ=255)
                                                                                                                                tCATTTTTTTTTTTTTTTTTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGTCACTTATCCACTTTATTTATAAACTTCTCTCAAAAATTGGCATTTACCAGTATCa                  >  2:3659306/1‑149 (MQ=255)
                                                                                                                                 cATTTTTTTCTCTCTTTCTATTTTTTACTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCNCTCAAAAAGTGGCATTTACCAGTATCaa                 <  1:5355691/149‑1 (MQ=255)
                                                                                                                                  aTTTTTTTCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCACTGATAAACTTCTCTCAAAAAGTGTCATTTACCAGTATCAac                >  1:6975797/1‑149 (MQ=255)
                                                                                                                                   tttttttCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCGAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCAGTATCAaca               >  1:9028805/1‑149 (MQ=255)
                                                                                                                                    ttttttCTCTCTTTTTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACTAGTATCAacac              <  2:5715328/149‑1 (MQ=255)
                                                                                                                                    ttttttCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCAGTATCAacac              <  2:6608847/149‑1 (MQ=255)
                                                                                                                                    ttttttCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCAGTATCAacac              >  2:9066377/1‑149 (MQ=255)
                                                                                                                                     tttttCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATTGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCAGTATCAACACt             >  1:2479704/1‑149 (MQ=255)
                                                                                                                                     tttttCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCAGTATCAACACt             <  2:2472221/149‑1 (MQ=255)
                                                                                                                                      ttttCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCAGTATCAACACtt            <  2:7872580/149‑1 (MQ=255)
                                                                                                                                        ttCTCTCTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCAGTATCAACACTTTa          <  1:8706966/149‑1 (MQ=255)
                                                                                                                                         tctctcTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCAGTATCAACACTTTaa         <  1:4071696/149‑1 (MQ=255)
                                                                                                                                         tctctcTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCAGTATCAACACTTTaa         >  2:475458/1‑149 (MQ=255)
                                                                                                                                         tctctcTTTCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCATAGTGCTAGACGTCCTATATTATTCTAAATTGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCAGTATCAACACTTGaa         >  2:5390801/1‑149 (MQ=255)
                                                                                                                                                ttCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCAGTATCAACACTTTAATTATAac  >  1:8920345/1‑149 (MQ=255)
                                                                                                                                                ttCTATTTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCAGTATCAACACTTTAATTATAac  <  1:4180329/149‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                 
AAGCTCAGTCACCGCACGAGACCCGCAGTCTAAAAGCATGTTGAAGCCAGACTCCGATTGTAAAAGATAAGAAGTTGTTCCTGCATCACGAGTGGGATACCCTCCCCAAACACCTAGCGCTGTTAATTTCATTTTTTTCTCTCTTTCTATTTTTTCTTAATTCTATTATAGTTCAAAGCACCTTAATCTTAGTGCTAGACGTCCTATATTATTCTAAATGGCACTTATCCACTTCAATTATAAACTTCTCTCAAAAAGTGGCATTTACCAGTATCAACACTTTAATTATAAC  >  AM406671/1826311‑1826602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: