| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 549,527 | (T)6→7 | intergenic (‑197/‑190) | tnp905 ← / → tdk | transposase for insertion sequence element IS905B/Tdk protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 549,521 | 1 | . | T | 98.7% | 4280.1 / 29.3 | 1084 | intergenic (‑191/‑196) | tnp905/tdk | transposase for insertion sequence element IS905B/Tdk protein |
| Reads supporting (aligned to +/- strand): ref base . (4/10); new base T (522/548); total (526/558) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1187 total aligned reads displayed.
AACGGATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑TTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTTAAATAA > AM406671/549373‑549664 | aaCGGATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAGGAATATAAGATGAAAAATAGATGcc < 2:5289601/149‑1 (MQ=255) aCGGATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑t > 2:4165571/1‑149 (MQ=255) aCGGATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑t > 1:336288/1‑149 (MQ=255) cGGATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑tt < 1:1950272/149‑1 (MQ=255) gATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑tttt > 1:4272099/1‑149 (MQ=255) tttATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑tttttt < 1:3055019/149‑1 (MQ=255) tttATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAACATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑tttttt > 2:5393902/1‑149 (MQ=255) ttATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑ttttttt < 1:9576157/149‑2 (MQ=255) ttATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAAGTGAAGTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGGTGCC‑ttttttt > 1:344467/1‑148 (MQ=255) cTTTTTGTGTTTACACAGCTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTa < 2:8074285/149‑1 (MQ=255) cTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTa < 2:8769605/149‑1 (MQ=255) cTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTa < 2:1693037/149‑1 (MQ=255) tttttGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTaa > 2:599328/1‑149 (MQ=255) ttttGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAg > 1:7609804/1‑149 (MQ=255) tttGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAgg < 1:3586761/149‑1 (MQ=255) tttGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAgg < 1:1317510/149‑1 (MQ=255) ttGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGa < 1:465549/149‑1 (MQ=255) tgtgTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGAt > 2:6437958/1‑149 (MQ=255) tgtgTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGAt > 1:8999059/1‑149 (MQ=255) tgtTTACACAACTTATATTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATaa < 1:6449025/149‑1 (MQ=255) tttACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATaaaa < 1:4476589/149‑1 (MQ=255) acacAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAAtct > 2:1232020/1‑149 (MQ=255) cacaACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAAtctc < 1:8285446/149‑1 (MQ=255) cacaACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAAtctc > 2:5855768/1‑149 (MQ=255) acaACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATctct < 2:7394676/149‑1 (MQ=255) acaACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATctct > 1:9130220/1‑149 (MQ=255) aaCTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTa > 2:7971080/1‑149 (MQ=255) aCTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTaa > 1:7870297/1‑149 (MQ=255) cTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATCACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAg < 2:5753966/149‑1 (MQ=255) ttATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGa > 2:2069995/1‑149 (MQ=255) tACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTATTAAGTTTCGGt > 2:2267576/1‑149 (MQ=255) cTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGaa > 2:4964357/1‑149 (MQ=255) aaGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAgg < 1:4801017/149‑1 (MQ=255) aGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGa < 1:6555990/149‑1 (MQ=255) gAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGAt < 2:3859397/149‑1 (MQ=255) aaaGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGa > 1:2677365/1‑149 (MQ=255) aaGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAg > 1:5516871/1‑149 (MQ=255) aGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAgg > 2:4284817/1‑149 (MQ=255) gatgatGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGa > 1:147690/1‑149 (MQ=255) tgatgaAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAg > 1:1182883/1‑149 (MQ=255) gatgaAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTTTTTTTTTTATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGt > 2:8599658/1‑149 (MQ=255) gatgaAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGt > 2:3380613/1‑149 (MQ=255) attgaattgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAg > 1:5053374/1‑149 (MQ=255) ttgaattgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGt > 1:3273748/1‑149 (MQ=255) gaattgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTaa > 1:5798769/1‑149 (MQ=255) attgaGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTaaaa < 2:4782686/149‑1 (MQ=255) ttgaGTAAGAGGAAAGCTTGTAGTTTCTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAAc < 1:4159937/149‑1 (MQ=255) tgaGTAAGAGGAAAGCTTGTAGTTTTTANATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACt > 1:5322522/1‑149 (MQ=255) aGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAg > 1:2912199/1‑149 (MQ=255) aGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAg > 2:7219559/1‑149 (MQ=255) agGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACt > 2:4511927/1‑149 (MQ=255) agGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACt > 1:8118253/1‑149 (MQ=255) agGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACt < 1:7091203/149‑1 (MQ=255) gtaaaGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTc < 2:259203/147‑1 (MQ=255) aaGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAAtct > 2:3972302/1‑91 (MQ=255) aaGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCaa > 2:8493642/1‑149 (MQ=255) aGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCaaa > 1:3859848/1‑149 (MQ=255) aGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCaaa > 2:3167811/1‑149 (MQ=255) aGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCaaa < 2:9289842/149‑1 (MQ=255) aGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCaaa > 1:8428717/1‑149 (MQ=255) gCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAaat < 2:6244446/149‑1 (MQ=255) gCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAaat > 1:5395233/1‑149 (MQ=255) gCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAaat < 2:2823379/149‑1 (MQ=255) tGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAaataat > 2:7504972/1‑149 (MQ=255) gTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAAtt > 2:2413750/1‑149 (MQ=255) gTAGTTTTTAGATTAATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAAtt < 2:1502673/149‑1 (MQ=255) tAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGa < 1:1017381/149‑1 (MQ=255) cATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGAt > 1:1681713/1‑149 (MQ=255) aaCTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGAtttt < 1:628893/149‑1 (MQ=255) cTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAGGTAAAACTAGCTTACTCCAAATAATTTTTATGGACAAGATTTtgt < 2:6955481/149‑1 (MQ=255) cTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTtgt < 1:2177818/149‑1 (MQ=255) tAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTtgtg < 2:8298639/149‑1 (MQ=255) gTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGaa < 1:6069699/149‑1 (MQ=255) tttATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAAt < 2:1348669/149‑1 (MQ=255) tttATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAAt < 2:556355/149‑1 (MQ=255) ttATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAAtt < 1:7971080/149‑1 (MQ=255) ttATTCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCGCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAAtt > 1:5640690/1‑149 (MQ=255) ttCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGa < 1:3747891/149‑1 (MQ=255) tCAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGaa < 1:690661/149‑1 (MQ=255) cAGAAAGAATATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCa < 1:5164147/113‑1 (MQ=255) gaaagaaTATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATTAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGa < 2:5156561/149‑1 (MQ=255) aaagaaTATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGaa < 1:2284913/149‑1 (MQ=255) aagaaTATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAat < 2:7786934/149‑1 (MQ=255) agaaTATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTAGTCCAAATAATTTTTATGGATAAGATTTTATGAATATGAAAGAata > 2:3691247/1‑149 (MQ=255) gaaTATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAatat < 2:6740908/149‑1 (MQ=255) aaTATAAGATGATAAATCGCTGCCTTTTTTTCAAGTTAGCATAAAACCTCTCAACAAACGTGAGAATCACGATGAGGAAGTTTTTAATTTAAATTATCTTACTCCAACTAATTTTTATGGATAAGATTTTGTGACTTTGAAAGCatata > 2:9207661/1‑149 (MQ=255) aaTATAAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAatata < 1:1803375/149‑1 (MQ=255) tataAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATAtt > 2:9507366/1‑149 (MQ=255) ataAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATAttt < 1:9268905/149‑1 (MQ=255) taAGATGAAAAATAGATGCCTTTTTTTTTTTTTTTTATAAAATAAATTAAGATTCGGTATAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCTAATAATTTTTATGGATAAGATTTTGTGAATTTGATATAATATATTTa > 2:3523338/1‑149 (MQ=255) taAGATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTa > 1:7443669/1‑149 (MQ=255) gATGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGa < 1:7267991/149‑1 (MQ=255) aTGAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGaa < 1:8787605/149‑1 (MQ=255) tGAAAAATAGATGCCTTTTTTTTTTTTTTTGATAAAATCTATTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAAt > 2:8954472/1‑149 (MQ=255) gAAAAATAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAAtt > 1:5933818/1‑149 (MQ=255) aaaaaTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAAttt > 1:2081233/1‑149 (MQ=255) aaaaTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAAtttt < 1:2486763/149‑1 (MQ=255) aaTAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTta > 1:3986768/1‑149 (MQ=255) tAGATGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTtaaa < 1:8565921/149‑1 (MQ=255) aTGCCTTTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTATAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTtaaataa < 2:1933096/149‑1 (MQ=255) | AACGGATTTATTCCTTTTTGTGTTTACACAACTTATTTTACACTACCAAGAAAAGATGATGAAAATTGAATTGAGTAAGAGGAAAGCTTGTAGTTTTTAGATTCATAACTAGTTTATTCAGAAAGAATATAAGATGAAAAATAGATGCC‑TTTTTTGAAGTAAGGATAAAATCTCTTAAGATTCGGTAGAATCAGGATGAGGAAGTTTTTAAGTAAAACTAGCTTACTCCAAATAATTTTTATGGATAAGATTTTGTGAATTTGAAAGAATATATTTAAGAATTTTTAAATAA > AM406671/549373‑549664 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |