| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 2,112,674 | +T | intergenic (‑79/+54) | llmg_2151 ← / ← llmg_2152 | Hypothetical protein ycaQ/Hypothetical protein ycaQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 2,112,670 | 1 | . | T | 98.9% | 4000.8 / 21.9 | 1008 | intergenic (‑75/+58) | llmg_2151/llmg_2152 | Hypothetical protein ycaQ/Hypothetical protein ycaQ |
| Reads supporting (aligned to +/- strand): ref base . (6/5); new base T (479/516); total (486/522) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1081 total aligned reads displayed.
TTTTGCCGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑TTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACAAAGAT > AM406671/2112522‑2112813 | tttGCCGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑t < 1:3024639/149‑1 (MQ=255) ttGCCGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑tt < 2:2389333/149‑1 (MQ=255) tGCCGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCGAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑ttt < 2:6310797/149‑1 (MQ=255) tCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑tttttcag > 1:5027229/1‑145 (MQ=255) cATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑Cagag < 1:6313384/149‑1 (MQ=255) cATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑Cagag < 2:6617429/149‑1 (MQ=255) cATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑Cagag < 1:9370918/149‑1 (MQ=255) aTTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑Cagaga < 2:7114569/149‑1 (MQ=255) aTTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑Cagaga > 2:3086933/1‑149 (MQ=255) aTTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑Cagaga > 1:2666712/1‑149 (MQ=255) aTTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑Cagaga > 2:5828541/1‑149 (MQ=255) aTTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑Cagaga < 1:2295818/149‑1 (MQ=255) aTTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑Cagaga < 1:6798153/149‑1 (MQ=255) ttttATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGt < 2:8653751/149‑1 (MQ=255) tttATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTa < 1:8425210/149‑1 (MQ=255) tttATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTa < 2:1715853/149‑1 (MQ=255) tttATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTa > 2:1639747/1‑149 (MQ=255) tATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTAtt > 1:5752818/1‑149 (MQ=255) atgatgAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTAttt > 1:5600562/1‑149 (MQ=255) atgatgAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATATTTAGAAAAAATATATTCTTTTT‑CAGAGAGTAttt < 2:5987575/149‑1 (MQ=255) gatgaATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACGCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTAttttt > 1:6021790/1‑149 (MQ=255) gatgaATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTAttttt < 1:696944/149‑1 (MQ=255) tgaATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCt > 1:614114/1‑149 (MQ=255) gataaatCAGCTCACCTACAAAAAACAGAGTCGCAAGCGCGGCTCGTGCCACCCATGAAGCGCCACTCCAACCACAAAACAAACCGCCGCTTCCCTAAGGACGAAAATCATAGGACAAAAGATATTCTTTTT‑CAGAGAGTATTTTTCTg < 2:5590998/145‑1 (MQ=255) gaATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTg < 1:285613/149‑1 (MQ=255) gaATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTg > 1:4888287/1‑149 (MQ=255) ataatCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGAt > 2:7558541/1‑149 (MQ=255) aaatCAACGCACCTAGAAAACACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAACAGCACCCCAATCCCAAATCAAATTTCCACTATCAAAATGACGCAACTCTTTAGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGAtt < 2:6965783/148‑1 (MQ=255) tCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCa > 2:8981299/1‑149 (MQ=255) cACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGTCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAatcatc > 2:6413457/1‑149 (MQ=255) aCCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAAtcatca < 1:5407373/149‑1 (MQ=255) tttAAAATACATGGTTTCACGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATCTTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCAttt < 1:4028290/149‑1 (MQ=255) tAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGt < 2:4425420/149‑1 (MQ=255) aaaaTACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATATTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTa < 2:2923533/149‑1 (MQ=255) aaTACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGa < 2:7710706/149‑1 (MQ=255) aTACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCACATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGaa > 1:1255644/1‑149 (MQ=255) aTACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGaa < 2:5467610/149‑1 (MQ=255) tACATGGTTTCAAGCACGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGGCGCAAATCTTTGGCAAAAATCTATTC‑TTTTGCAGAGAGTATTTTTCTGATTTCACTCATCATTTGTAGAAc > 2:5321065/1‑149 (MQ=255) aCATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACa > 1:8760718/1‑149 (MQ=255) cATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTATGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAg < 2:4922137/149‑1 (MQ=255) aTGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAgg > 2:7311441/1‑149 (MQ=255) tGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGt < 1:3692707/149‑1 (MQ=255) tttCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCa > 1:3174368/1‑149 (MQ=255) tttCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCATTGGAAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCa < 2:5070013/149‑1 (MQ=255) tCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACt > 2:9149259/1‑149 (MQ=255) tCAAGCGCGGCTCCTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACt < 1:5264494/149‑1 (MQ=255) cAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACtt < 2:2666712/149‑1 (MQ=255) gcgcGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGt < 1:5144125/149‑1 (MQ=255) gcgGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCt < 1:7820962/149‑1 (MQ=255) gCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTAcg > 1:3367165/1‑149 (MQ=255) gCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTATAGAACAGGTTAACTTTGTCTAcg > 1:7193153/1‑149 (MQ=255) ctctTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTAcgc > 1:3617972/1‑149 (MQ=255) tGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCa > 2:6775905/1‑149 (MQ=255) aCGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGc < 2:7872684/149‑1 (MQ=255) gATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTc < 1:4339300/149‑1 (MQ=255) gATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATAATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGATTc > 2:6153395/1‑149 (MQ=255) aTGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTCCt > 1:2115647/1‑149 (MQ=255) agagGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCAt > 1:2509648/1‑149 (MQ=255) agGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTTTGTTTTCTTTCATCATTTGTAGAACAGGTTCACTTTGTTTACGCGCCATTGCTTCTTCATAg > 2:1147477/1‑149 (MQ=255) ccccAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGAt < 2:4207414/149‑1 (MQ=255) cccAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGAtt < 1:1663186/149‑1 (MQ=255) ccAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTc < 2:8090461/149‑1 (MQ=255) aTCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCg < 2:9409652/149‑1 (MQ=255) cccAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGcc > 2:7436168/1‑148 (MQ=255) caaatcaaatTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCata > 1:8556878/1‑149 (MQ=255) caaatcaaatTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCata < 1:8259733/149‑1 (MQ=255) aaatcaaatTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCatat < 1:9013560/149‑1 (MQ=255) aatcaaatTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATAtt < 1:8053244/149‑1 (MQ=255) atcaaatTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGCTTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTCCGCGCCATTGCTTCTGCATAGCTGATTCCCGCATAttt > 2:3465164/1‑149 (MQ=255) tcaaatTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATAtttt < 1:4664649/149‑1 (MQ=255) aaatTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCg > 1:1471170/1‑149 (MQ=255) aatTTCCACTTGCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGa < 1:1140507/149‑1 (MQ=255) atTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGaa < 1:7366640/149‑1 (MQ=255) tCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTg > 1:1005871/1‑149 (MQ=255) tCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTg < 1:9189145/149‑1 (MQ=255) tCCAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTg < 2:3756320/149‑1 (MQ=255) ccAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGt > 1:6532270/1‑149 (MQ=255) ccAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGt > 1:963312/1‑149 (MQ=255) ccAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGt < 1:7897290/149‑1 (MQ=255) cAAATGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTc < 1:3844037/149‑1 (MQ=255) aTGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCaaa > 1:4601442/1‑149 (MQ=255) aTGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCaaa > 1:7609974/1‑149 (MQ=255) aTGACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATCTTCGAAGTAAAAACTTTCaaa > 2:2158057/1‑149 (MQ=255) gACGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAAtc > 2:4775800/1‑149 (MQ=255) aCGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAAtct > 2:360331/1‑149 (MQ=255) cGCAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAAtctt > 1:6572948/1‑149 (MQ=255) cAAATCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAAtcttct < 2:1416454/149‑1 (MQ=255) aaTCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTAt > 1:1890028/1‑149 (MQ=255) aTCTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTAtt < 1:6431740/149‑1 (MQ=255) cTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTTTTTTTTTTTTCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTgg > 2:1948383/1‑149 (MQ=255) cTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTgg < 2:8321402/149‑1 (MQ=255) cTTTGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTgg < 1:1817932/149‑1 (MQ=255) ttGGCAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCa < 1:4165126/149‑1 (MQ=255) cAAAAATATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAAt > 2:8819256/1‑149 (MQ=255) aaaaaTATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATa > 2:3291742/1‑149 (MQ=255) aaaTATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCACATCTTCTATTGGCAATATACa > 2:3964417/1‑149 (MQ=255) aaaTATATTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACa > 2:4125803/1‑149 (MQ=255) atatTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACAAAGa < 2:4645891/149‑1 (MQ=255) atatTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACAAAGa < 1:6718908/149‑1 (MQ=255) atatTCTTTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACAAAGa > 2:847850/1‑149 (MQ=255) | TTTTGCCGTCCATTTTTATGATGAATAATCAGCTCACCTTTAAAATACATGGTTTCAAGCGCGGCTCTTGCCACGGATGAAGAGGCACCCCAATCCCAAATCAAATTTCCACTTTCCAAATGACGCAAATCTTTGGCAAAAATATATTC‑TTTT‑CAGAGAGTATTTTTCTGATTTCAATCATCATTTGTAGAACAGGTTCACTTTGTCTACGCGCCATTGCTTCTGCATAGCTGATTCCCGCATATTTTCGAAGTAAAAACTGTCAAATCTTCTATTGGCAAAATACAAAGAT > AM406671/2112522‑2112813 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |