New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM406671 = 84512NA (NA)46 (0.040)
+AAAA		 32/288 20.8 NA pseudogene (177/729 nt) tnp1077 pseudogene
?AM406671 84526 = NA (NA)pseudogene (191/729 nt) tnp1077 pseudogene
Rejected: Coverage evenness skew score above cutoff.

TATCGCCCCATGGTAGAACTTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM406671/84372‑84512
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATGGGCAAGTGAAGAAAGCTTACCTCAACCCTTATATGGATCTGTTTAATCGTGAAGTT  >  AM406671/84526‑84671
                                                                                                                                             ||||                                                                                                                                                  
TATCGCCCCATGGTAGAACTTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAATTCAACGTTTAATGCGAAAGCGAGGACTTTGTATTACTTCTTTTAGGAGGAAAAAACGAAAGTATAGTTCCTACAGAAAAAAAAAAAAAAA                                                                                                                                                <  2:1480178/149‑1
 ataGCCCCATGGTAGAACTTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAATTAAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTTCTACAGAGAAAAAAAAAAAAAA                                                                                                                                               <  2:106580/146‑1
 ATCGCCCCATGGTAGAACTTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATCGTTCCTACAGAGGAAAAGAAACAAAA                                                                                                                                               <  2:7553899/149‑1
 ATCGCCCAATGGTAGAACTGTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAATTAAACGAATAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAAGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAAAAAAAAAA                                                                                                                                               <  2:2325925/149‑1
  TCGCGCGATGGTAGAAAGTTTAAAGCGTGAAGGATATATTGTTAAACATAAAAAAGTTCAACGGTTAATGGGGAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAGACACGAAAGTATAGTTCCTACAGAGGAAAAAAAAAAAAAA                                                                                                                                              <  2:3393518/149‑1
     CCCCATGGTAGAACTTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGCACTCTGTATTACTCCTTTTTGGAGGAAAACACGAAAGTATAGTTTCTACAGAGAAAAAAAAGAAAAAAATT                                                                                                                                           <  2:4900431/149‑1
       CCATGGTAGAACTTTTAAAGCGTGAAGGATATATTGTTAACAATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAGACACGAAAGTATAGTTCCTACAGAGAAAAAAAAAAAAAAAATTTA                                                                                                                                         <  2:6931697/149‑1
         ATGGTAGAAATTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTATGGAGAAAAAAACGAAAGTATAGTTCCTACAGAGAAAAAAAAAAAAAAAATTTATT                                                                                                                                       <  2:6585787/149‑1
          TGGTAGAACTTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAAAAGAAAAAAATTTATTA                                                                                                                                      <  2:8713972/149‑1
          TGGTAGAACTTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAAAAAAAAAAAATTTATTA                                                                                                                                      <  2:8834268/149‑1
          TGGTAGAACTTTTAAAGCGTGAAGGATATATTGTAAAACATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAAAAAAAAAAAATTTATTA                                                                                                                                      <  2:6710841/149‑1
          TGGTAGAACTTATAAAGCGTGAAGGATATATTGATAACAATAAAAAAAATCAACATTAAATGCGAAAGCTAGGACTTTGTATTACTTCTTTATGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAAAAAAAAAAAATTTATTA                                                                                                                                      <  2:1531200/149‑1
           GGTAGAACTTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAGAAGAAAAAAATTTATTAA                                                                                                                                     <  2:7616694/149‑1
           GGTAGAAATTTTAAAGCGTGAAGGATATATAGTAAACCATAAAAAAATTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTAGAGAAAAACACGAAAGTATAGTTCCTACAGAAAAAAAAAAAAAAAAAATTTATTAA                                                                                                                                     <  2:2006818/149‑1
             TAGAACTTTTAAAGCGTGAAGGATATATTGTTAACCAAAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAAAAAAAAAAAATTTATTAAAT                                                                                                                                   <  2:11645/149‑1
             TAGAACTTTTAAAGCGTGAAGGATATATTGTTAAACATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAGAAAAAAAAAATTTATTAAAT                                                                                                                                   <  2:2998248/149‑1
              AGAACTTTTAAAGCGTGAAGGATATATTGTTAAACATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAGAAGAAAAAAATTTATTAAATA                                                                                                                                  <  2:4929883/149‑1
                  aTTTTAAAGCGTGAAGGATATAAAGTTAACAATAAAAAATTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAAAAAAAAAAAATTTATTAAATAGACG                                                                                                                              <  2:7989317/148‑1
                   TTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAAAAAAAAAAAATTTATTAAATAGACGT                                                                                                                             <  2:1265797/149‑1
                      TAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAATCAAAAAAAATTTATTAAATAGACGTTTT                                                                                                                          <  2:3118084/149‑1
                          GCGTGAAGGATATATAGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAGAAAAAAAAAATTTATTAAATAGACGTTTTAATT                                                                                                                      <  2:8665397/149‑1
                            aTGAAGGAAATATTTTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCC                                                                                                                    <  2:2179569/148‑1
                            GTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCC                                                                                                                    <  2:7175902/149‑1
                               AAGGATATATTGTTAACAATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACAAGAAAGTATAGTTCCTACAGAGAAAAAGAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAA                                                                                                                 <  2:3520476/149‑1
                                aagagATATTGTTAACAATAAGAAAGATCAAAGTTTAATGAGAGAGGTAGGAATTTGTATTACGTCTATTTGGAGAAAAACACGAAAGTATAGTTACTACAGAGAAAAAAAAACAAAAAATTTATTAAATAGACGTTTTAATTCCAAAG                                                                                                                <  2:297035/144‑1
                                AGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAATAGCAAAAAATTTATTAAATAGACGTTTTAATTCCAAAG                                                                                                                <  2:2605445/149‑1
                                 aaATATATTATTAACCATAAAAAAGTGCAACGAATAATGCGAAAGATAGGACTTTGTATTACTTCTGTTCAGAGAAAAACACGAAAGTATAGTTCCTACAGAGGAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGT                                                                                                               <  2:7272146/147‑1
                                   ATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTG                                                                                                             <  2:8109930/149‑1
                                   ATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGATAGGACTTTGTATTACTTCTTTTAGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTG                                                                                                             <  2:2021240/149‑1
                                   ATATATTGATAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAGAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTG                                                                                                             <  2:8180086/149‑1
                                    TATATTATTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGAGAGGAACTTGTATTACTTCTATTTAGAAGAAAACACGAAAGTATAGTTCCTACAGAAAAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGT                                                                                                            <  2:4893592/149‑1
                                      TATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTAGGAGAAAAAAACGAAAGTATAGTTTCTACATAGAAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTC                                                                                                          <  2:9564267/149‑1
                                           TTAAACATAAAAAAGTTCAACGTTTAAAACGAAAGCTAGGACCTTGTATGACTTCTAGTTAGAGGAAAACACAAAAGTATACTTCCTACAGATGAAAAAAAACAAAAAATTTATTAAATAGACGTTTTAATTCGAAAGTTGTTCATCAA                                                                                                     <  2:5318183/149‑1
                                              ACCATAAAAAAGTTCAACGGTTAATGCGAAAGCTAGGACTTTGTAATACTTATTTGTGGAGGAAAACAAGAAAGTATAGTTCCTACAGAGAAAAAAAAGAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAA                                                                                                  <  2:2200197/149‑1
                                                      AAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAGAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAAC                                                                                          <  2:5901304/149‑1
                                                            CAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAGAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATAC                                                                                    <  2:8710163/149‑1
                                                              ACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAAAAGAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTA                                                                                  <  2:7005355/149‑1
                                                                   aAATGAGAAAGAAAGGACATTGTATTACTTCAATTTAGAAGAAAACACGAAAGTATAGTTCCTACAGAGGAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAG                                                                             <  2:8269552/148‑1
                                                                    AATGCGAAAGCTAGGACTTTGTATTACTTCTTTTAGGAAGAAAACACGAAAGTATAGTTCCTACAGAAAAAAAGAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGT                                                                            <  2:2928804/149‑1
                                                                        CGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGAAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAA                                                                        <  2:2285171/149‑1
                                                                                   ACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTTCTACAGAGAAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATA                                                             <  2:4152456/149‑1
                                                                                         TATTACTTCTTTTTGGAGGAAAACACTAAAGTATAGTTCCTACATAGAAAAAAAAGAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATGGGC                                                       <  2:1209077/149‑1
                                                                                         TATTACTTCTTTGTGGAGGACAAAACGAAAGTAGAGTTCCTACAGAGGAAAAGACACAAAAAATTTATTAAATAGACGTTTTAAATCCAAAAATATACAAAAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATGGGC                                                       <  2:5692649/149‑1
                                                                                          ATTACTTCTTTTTGGAGGAAAAAACGAAAGTATAGTTCCTACAGAGAAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATGGGCA                                                      <  2:1916116/149‑1
                                                                                           TTACTTCTATTTAGAGGAAAGAACGAAAGTATAGTTCCTACAGAGGAAAAAAAAAAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATGGGCAA                                                     <  2:5124645/149‑1
                                                                                                   ttgTGGAGGAAAAAACGAAAGGATAGTTCCTACAGAGGAAAAAACGCAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATGGGCAAGTGAAGAA                                             <  2:4831428/146‑1
                                                                                                                                              gcACAAAAAATTTATTAAATAGACGTTATAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGTGAATGGGCAAGTGAAGAAAGCTTACCTCAACCCTTATATGGATCTGTTTAATCGTGAAGTT  <  2:2484260/147‑1
                                                                                                                                             ||||                                                                                                                                                  
TATCGCCCCATGGTAGAACTTTTAAAGCGTGAAGGATATATTGTTAACCATAAAAAAGTTCAACGTTTAATGCGAAAGCTAGGACTTTGTATTACTTCTTTTTGGAGGAAAACACGAAAGTATAGTTCCTACAGAGGAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM406671/84372‑84512
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAAAAATTTATTAAATAGACGTTTTAATTCCAAAGTTGTTCATCAAAAACTGGTAACTGATACTACTGAGTTTAAATACTACGATAATGGGCAAGTGAAGAAAGCTTACCTCAACCCTTATATGGATCTGTTTAATCGTGAAGTT  >  AM406671/84526‑84671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.