| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,572,258 | G→A | intergenic (+56/+181) | llmg_1598 → / ← deoD | putative secreted protein/DeoD protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,572,258 | 0 | G | A | 99.8% | 3401.7 / ‑2.1 | 867 | intergenic (+56/+181) | llmg_1598/deoD | putative secreted protein/DeoD protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (397/466); minor base . (2/0); total (400/467) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.12e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 871 total aligned reads displayed.
CTTGGACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AATAGAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGATTGAGAA > AM406671/1572114‑1572400 | ttGGACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCtt < 1:2429731/149‑1 (MQ=255) aCAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGa > 1:9071178/1‑149 (MQ=255) agaaaGGTTCAAAAAAAAGTATAAACGTTAAAAAAAAAAAAACTTGTGTTAAAAATAAAAGTAAATATAAATTTAATGCATAAGAAACTATACCTCATCTATTAAAAGATGGAAGTAAAGTTTAAAAAAAAA‑AA‑AAAAAAGCTTTTGaa < 2:9048177/147‑1 (MQ=255) aaaaGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATATAAAAT‑AA‑AAAAAAGCTTTTGAAt < 1:2656514/149‑1 (MQ=255) aaaGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATa < 1:545497/149‑1 (MQ=255) ggTTAAAAAGAAAGAGTTACCGTTAAATACGACAAAGCTTCTGGTAAAATTACAAGGAAATATAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAA‑AA‑AAAAAAGCTTTTGAATAAGc < 2:734718/149‑1 (MQ=255) ttCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCtt > 2:4425061/1‑149 (MQ=255) aaCAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCttttt > 1:1798929/1‑149 (MQ=255) aaCAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCttttt > 2:4550302/1‑149 (MQ=255) aCAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCtttttt > 1:3217091/1‑149 (MQ=255) cAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTa < 1:8879829/149‑1 (MQ=255) gAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTAtt > 2:1900953/1‑149 (MQ=255) aGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAATCTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTc > 1:4974517/1‑149 (MQ=255) tgtTACCGCTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAg < 1:5550733/149‑1 (MQ=255) tttAACGTTCAATACGACAAAAATTCTGGTAAAATTACAAGAAAATCTAAATTTAATGCATAAGAAACTTTACAGCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGa < 2:67990/148‑1 (MQ=255) attAACGTTCAATAAAACAAAGCTTCTGGTCAAATTACAAGAAAATCTAAATTTAATTCATAAGAAACTTTACCTCATATCTGAAAAGATGGAAGTAAATAAAATAAAAAAA‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGa < 2:69670/148‑1 (MQ=255) tACTGTTCAATACGACAAAGTTTAAAGTCAAATAAAAATTAGATCTAAATTTGAGGCATATGAAAATTTACCTAATCTCTGAAAAAAATGAAGGAAAGTTTATCAAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGaaa < 2:2608795/149‑1 (MQ=255) aCCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAAt > 2:5656988/1‑149 (MQ=255) ggTTCAATACGACAAAAATTCTGGTCAAAATACAATTAAATCTAAATTTAATGCATAAGAAACTTTAACTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATaa < 2:6336648/148‑1 (MQ=255) gTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAAc < 1:3311138/149‑1 (MQ=255) ttCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACa > 1:4061296/1‑149 (MQ=255) cAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACaga > 1:14623/1‑149 (MQ=255) cAATACGAAAAAGCTTCTGGTCAAATTACATGTAAATCTAAATTTAATGCATAAGAAACTTTACCACATCTCTGAAAATATGGAAGGTAAGTTTATCTAAAAT‑AATAATA‑AGCTTTTGAATTAGCTTTTTGATTTTCGGAATTAATaga > 2:2502671/1‑149 (MQ=255) aaTACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACagaa < 2:3217091/149‑1 (MQ=255) cGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATg > 2:7897854/1‑149 (MQ=255) cGAAAAAGATTCTAGTAAAATAAAAAGTAAATCAAAATTTAATGCAGAAGAAACTTTACCTCATTTCTGAAAAGATGAAATGAAAGTTTATATAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATg < 2:5789813/149‑1 (MQ=255) aCAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGa > 1:8388949/1‑149 (MQ=255) aGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCATAAATAACAGAAGATGGAAAAc > 1:6099792/1‑149 (MQ=255) aGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAAc > 1:1056508/1‑149 (MQ=255) aGCGTCTGGTCAAATTACAAGCAAATCTAAATTTAATGCATAAGAAACTATACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAAc < 2:4840307/149‑1 (MQ=255) cTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAActc < 1:6420053/149‑1 (MQ=255) ttCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGAGGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAActct > 2:4161188/1‑149 (MQ=255) tCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACtctt > 2:7685923/1‑149 (MQ=255) tCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACtctt > 2:4956914/1‑149 (MQ=255) cTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACtcttc < 1:2257388/149‑1 (MQ=255) cTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGATTATGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACtcttc > 1:62159/1‑149 (MQ=255) gTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCtaa > 2:3803158/1‑149 (MQ=255) aaTTACAAGTAAATATAAATTAAATACAAAAAAAACTTTACCTAATCAATGAAAAGATGAAAGAAAAGTTTATCAAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATaaa < 2:1299400/149‑1 (MQ=255) aTTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATaaaa > 2:8328141/1‑149 (MQ=255) ttACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAAt > 1:7884666/1‑149 (MQ=255) tACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATa < 1:8248118/149‑1 (MQ=255) cAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGa > 1:169946/1‑149 (MQ=255) gTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACt < 2:7613139/149‑1 (MQ=255) gTAAAACTACATTTAATGCATAAGAAAATATACCTCATCTCTGAAAAGATGGAAGAAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTGATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACt < 2:9441317/149‑1 (MQ=255) tAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACtt > 2:3512431/1‑149 (MQ=255) tAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACtt < 1:4617991/149‑1 (MQ=255) tAAATCTAAATATAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTGTATCTCAAAT‑AA‑AAAAAAGATTTTGTATAAGCTTTTTTATTTTAAGAAATAACATATGATGTAAAACTCTTGTAATTAAATAGagatt > 2:5187617/1‑145 (MQ=255) aTCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGCACTTGAg > 2:652668/1‑149 (MQ=255) cTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTg < 1:8581328/149‑1 (MQ=255) tAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGa > 1:9575528/1‑149 (MQ=255) aaaTTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGAt < 1:2983987/149‑1 (MQ=255) aaTTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATa < 1:345406/149‑1 (MQ=255) aTTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATaa > 1:7603145/1‑149 (MQ=255) tttAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAATTTGAGTGATaaa > 2:3884515/1‑149 (MQ=255) tttAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCGTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAACATAGAACTTGAGTGATaaa > 2:4667109/1‑149 (MQ=255) ttAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATaaaa < 1:5743959/149‑1 (MQ=255) tAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATaaaaa > 1:5854370/1‑149 (MQ=255) tGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATa < 2:7152652/149‑1 (MQ=255) gCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAg < 1:3931730/149‑1 (MQ=255) cATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGa > 1:870804/1‑149 (MQ=255) aGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCtt < 1:7312132/149‑1 (MQ=255) aGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCtt < 1:7489824/149‑1 (MQ=255) aaaCTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCt > 1:7101370/1‑149 (MQ=255) aaCTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTa > 2:2180513/1‑149 (MQ=255) aCTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTaa > 1:4151018/1‑149 (MQ=255) cTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTaaa < 1:9382621/149‑1 (MQ=255) ttACCGCATCTCAAAAAATATGAAAAGAAAGTTTAACAAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAgg < 2:5437450/149‑1 (MQ=255) tACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGt > 1:378297/1‑149 (MQ=255) ccTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGTTCt > 2:3629423/1‑149 (MQ=255) cTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTa < 2:80655/149‑1 (MQ=255) atcaacgctGAACAGATAGAAGGAAAGTTTATCTAAAATAAA‑AAAAAAGCGTTTGAATAAGCTTGTTTATGTTCAGAAATAACTGAAGGTGGAAAAATCTTCTAATAAAATACAACTTGAGTGATAAAAAATAGACCGTCTAAAGGTCt < 2:3382144/142‑1 (MQ=255) cataacagAAAAGATAGAAGTAAAGTTAATTTAAAAT‑AA‑CAAAAAGCTATTAAATAAGCTTTATTATTATCAGAAAAAACAAAAGATGGAAAACTCTTCTAATAAAAGAGAACATGAAAAAGAAAAAATAGACCTTCTAAAGGTCTAtt < 2:9232060/142‑1 (MQ=255) cATCTCTGAAAAGCTGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTTATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAtt < 1:5248964/149‑1 (MQ=255) aTCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAttt < 1:6979063/149‑1 (MQ=255) ctctGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAttttt > 1:7768245/1‑149 (MQ=255) gAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAttttttttt < 1:9300308/149‑1 (MQ=255) aaaGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTa > 1:6783671/1‑149 (MQ=255) aGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAg > 1:1983390/1‑149 (MQ=255) gATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGa > 1:284825/1‑149 (MQ=255) gATGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGa < 2:6293725/149‑1 (MQ=255) attgaaggaaATTTTATATAAAAT‑AA‑AAAAAAGCGTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGaa < 2:2770942/146‑1 (MQ=255) aTGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGaa > 2:5047980/1‑149 (MQ=255) tGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGaaa < 1:3541334/149‑1 (MQ=255) tGGAAGGAAAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGaaa > 1:7677413/1‑149 (MQ=255) ggaaggaaAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAAc > 2:8835756/1‑149 (MQ=255) gaaggaaAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACa < 1:5123968/149‑1 (MQ=255) aggaaAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGa > 1:4795510/1‑149 (MQ=255) ggaaAGTTTATCGAAAAT‑AA‑AAAAAAGCTTTTGAATGAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGaa < 1:8048083/149‑1 (MQ=255) gaaAGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTATAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACCGaaa > 2:1093541/1‑149 (MQ=255) aaaaTTTATAGAAAAG‑AA‑AAAAAAGCTTTTGAATAAGCTATTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATATAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAAt < 2:161099/149‑1 (MQ=255) aaaTTTTATATAAAAA‑AA‑AAAAAAGCTATTGAATAAGCTTTGTTATTTTCAGAAAGAACAGAAAATGGAAAACTCCTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAAt < 2:8449072/149‑1 (MQ=255) aaaGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTAAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACATTCTAAAGGTCTATTTTTTATTTAAGAAACAGAAAt > 2:229093/1‑149 (MQ=255) aaGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAAtt < 1:1197471/149‑1 (MQ=255) aGTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGATACAGAAtttt > 2:8155944/1‑149 (MQ=255) gTTTATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTa > 2:6033926/1‑149 (MQ=255) ttATCTAAAAT‑AA‑AAAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACt > 1:6665300/1‑149 (MQ=255) ataaaat‑aa‑aaAAAAGCTTTTGAAAAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGa < 2:3063231/148‑1 (MQ=255) taaaat‑aa‑aaAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGAt < 1:4484895/149‑1 (MQ=255) aaat‑aa‑aaaaAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGATTg > 1:4270788/1‑149 (MQ=255) at‑aa‑aaaaAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTTAGTGATTAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTTCTTAGTTTtag > 2:1456529/1‑149 (MQ=255) | CTTGGACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAAT‑AA‑AATAGAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGATTGAGAA > AM406671/1572114‑1572400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |