| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,921,516 | C→T | intergenic (‑6/‑379) | llmg_1941 ← / → glnP | conserved hypothetical protein/glutamine ABC transporter permease and substrate binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,921,516 | 0 | C | T | 99.6% | 4206.2 / NA | 1102 | intergenic (‑6/‑379) | llmg_1941/glnP | conserved hypothetical protein/glutamine ABC transporter permease and substrate binding protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (540/555); minor base G (1/4); total (541/561) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.74e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1113 total aligned reads displayed.
AAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATGTTGACCATTAGGCATCTGGGCAAAATTCCGCCATCCACTCCATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATCCCTTTTCAAAAGTTTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACTTTTCTTATATTTTATTCAGGAGAACTCT > AM406671/1921367‑1921664 | aaaGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATtcc < 1:5678791/149‑1 (MQ=255) aaGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCt > 1:7480260/1‑149 (MQ=255) ggggAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCttt < 2:8019118/149‑1 (MQ=255) ggggAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCttt < 2:2922533/149‑1 (MQ=255) aaaTTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCaaa < 1:3798325/149‑1 (MQ=255) aTTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAg > 2:1717778/1‑149 (MQ=255) ttACTAAACCTTTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAGt > 2:3527768/1‑149 (MQ=255) tACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAGtt < 1:7830853/149‑1 (MQ=255) cTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTc < 1:4674166/149‑1 (MQ=255) cTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTc > 2:9162394/1‑149 (MQ=255) tGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCt > 1:6487199/1‑149 (MQ=255) gTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCtt > 2:5131947/1‑149 (MQ=255) tttCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAACTTGTACAAACATAAAATTCCTTTTCAAAAG‑TTAAAACTTCTTa > 2:5461076/1‑149 (MQ=255) cAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACag < 2:9036981/149‑1 (MQ=255) aaTAAAGATAATCGCTCCTAAAACAACANAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACagt > 1:5330146/1‑149 (MQ=255) tAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACagtag > 1:2718333/1‑149 (MQ=255) tAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACagtag > 2:5296191/1‑149 (MQ=255) tAAAGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCC‑TTTAAAAAAATTAAAAATTCTTACagtag < 2:2049931/149‑1 (MQ=255) aaGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGtt > 2:6897473/1‑149 (MQ=255) aaGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGtt < 2:932263/149‑1 (MQ=255) aGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTc > 2:8862258/1‑149 (MQ=255) aGATAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTc > 2:31473/1‑149 (MQ=255) tAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGt < 2:761063/149‑1 (MQ=255) tAATCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATAAAAGAAAAAAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGt < 2:7311319/149‑1 (MQ=255) aaTCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGtt < 1:9075651/149‑1 (MQ=255) aaTCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGtt > 1:9520016/1‑149 (MQ=255) tCGCTCCTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTa > 1:7356233/1‑149 (MQ=255) tCCTAAAACAACATAAATCCAAATG‑TGACCATTCGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTACTTTTCAAAAG‑TTAAAAATTCTTACAGTAGCTCTGTTTACTTa > 2:626042/1‑149 (MQ=255) ccTAAAACAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTaa > 2:1880871/1‑149 (MQ=255) aaaaCAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATa > 1:6806794/1‑149 (MQ=255) aaaCAACATAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAg > 1:5160879/1‑149 (MQ=255) acaacaTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATACACT‑CAATAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGaa < 2:3343647/149‑1 (MQ=255) acaTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATAc < 1:1523157/149‑1 (MQ=255) acaTAAATCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATAc < 1:4137618/149‑1 (MQ=255) aaaTCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTa < 2:4795491/135‑1 (MQ=255) aaaTCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATaa < 1:7670177/149‑1 (MQ=255) aTCCAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAat > 1:6272854/1‑149 (MQ=255) ccAAATG‑TGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAatat > 1:452625/1‑149 (MQ=255) aatgtGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATAtctc < 2:110189/145‑1 (MQ=255) atgttaCCATTAGGCATCTGAGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTAAAAAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATctct < 2:1394036/144‑1 (MQ=255) atgtGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATctct > 1:6564407/4‑149 (MQ=255) tgtGACCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTa > 1:5449330/3‑149 (MQ=255) aCCATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCaa > 1:280227/1‑149 (MQ=255) ccATTAGGCATCTAGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAg < 2:2122695/149‑1 (MQ=255) cATTAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGc > 1:3185883/1‑149 (MQ=255) ttAGGCATCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCAc > 1:8370685/1‑149 (MQ=255) aTCTGGGCAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTc < 1:2109260/149‑1 (MQ=255) cAAAATT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTa < 1:1970525/149‑1 (MQ=255) aaaaTT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTac < 2:7109727/149‑1 (MQ=255) aaaaTT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTac < 1:1009325/149‑1 (MQ=255) aaaaTT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTac > 1:2498216/1‑149 (MQ=255) aaaTT‑CGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTaca > 2:4952692/1‑149 (MQ=255) aaactccccATCCACT‑AATTAAAGAAACCAAAAAGCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAATCACTCGTTCAATTTTaca < 2:6145045/142‑1 (MQ=255) aattcGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTacaa < 2:8490239/145‑1 (MQ=255) attcGCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTacaac > 1:173452/4‑149 (MQ=255) cGCCATCCACT‑CATTAAAGAAAACAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTAAAAACaaa < 2:7193032/149‑1 (MQ=255) gCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACaaaa > 1:717860/1‑149 (MQ=255) gCCATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACaaaa < 2:402511/149‑1 (MQ=255) ccATCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACaaaaa > 2:260688/1‑149 (MQ=255) tCCACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAGATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGa > 2:6547005/1‑149 (MQ=255) ccACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGAc < 1:3642314/149‑1 (MQ=255) ccACT‑CATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGAc < 1:4348960/149‑1 (MQ=255) actcATTAAAGAAACCAAAAATCGAGAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACtt < 2:6404761/146‑1 (MQ=255) ctcATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACttt < 2:5892854/147‑1 (MQ=255) tcATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACtttt < 1:3896206/148‑1 (MQ=255) cATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACttttt > 2:7810774/1‑149 (MQ=255) cATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACttttt > 1:8709879/1‑149 (MQ=255) ttAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGa > 2:7477338/1‑149 (MQ=255) aaaGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACa > 1:2907941/1‑149 (MQ=255) aaGAAACCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACaa > 2:4402275/1‑149 (MQ=255) aCCAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATaa > 2:6061661/1‑149 (MQ=255) ccAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAgg < 1:7017477/131‑1 (MQ=255) ccAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATaaa > 2:4314593/1‑149 (MQ=255) cAAAAATCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAc > 2:3652543/1‑149 (MQ=255) aaaTCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACttt < 1:3408605/149‑1 (MQ=255) aaacGAAAGATGTAAAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAAAAAAAAAAAAAAAAGGACTTTTTGACAATATAAACtttc < 2:8191613/146‑2 (MQ=255) aaTCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACtttc < 1:8570159/149‑2 (MQ=255) aTCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACtttct < 2:8315752/149‑3 (MQ=255) aTCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACtttct < 1:1214700/149‑3 (MQ=255) aTCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACtttct < 1:6067899/149‑3 (MQ=255) aTCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACtttct > 2:2303168/1‑147 (MQ=255) tCGAAAGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACtttctt < 1:9244014/149‑4 (MQ=255) aaaGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTtata < 2:4586847/149‑1 (MQ=255) aaaGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTtata < 1:4833683/149‑1 (MQ=255) aaGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTatat < 1:1443064/149‑1 (MQ=255) aaGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTatat < 1:3072651/149‑1 (MQ=255) aaGTTGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTatat > 1:8170705/1‑149 (MQ=255) ttGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATAtttt < 1:8818450/149‑1 (MQ=255) ttGTACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATAtttt < 2:2792124/149‑1 (MQ=255) tggTACAGACATAGTGTGCCTTTTCAAAAG‑TGAAAAATGCTTACAGTAGTTCTGTGTACTTAAATATAATACATAAAGATCTCTAGCAAGCACTCGTTCAATTTTACAACAAAAAGGACTGTGTGACAATATAAAC‑TTTCTTATAtttt < 2:1207124/147‑1 (MQ=255) tACAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTAtc < 1:4993496/149‑2 (MQ=255) aCAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTAtca > 2:1551088/1‑147 (MQ=255) cAAACATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTacaa > 2:5683667/1‑104 (MQ=255) aaaCATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTAtcaga < 1:2349834/149‑5 (MQ=255) aaCATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTAtcagag > 2:2482239/1‑144 (MQ=255) cATAATATTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTAtcagagaa < 1:1812457/149‑8 (MQ=255) aataTTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTA‑TCA‑GAGAActc > 1:7993878/1‑149 (MQ=255) aataTTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTA‑TCA‑GAGAActc < 2:3846561/149‑1 (MQ=255) atatTCCTTTTCAAAAG‑TTAAAACTTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTA‑TCA‑GAGAActct > 1:982499/1‑149 (MQ=255) atatTCCTTTTCAAAAG‑TTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAAC‑TTTCTTATATTTTA‑TCA‑GAGAActct > 1:5795235/1‑149 (MQ=255) | AAAGGGGAAAATTACTAAACCTGTTTCAATAAAGATAATCGCTCCTAAAACAACATAAATCCAAATGTTGACCATTAGGCATCTGGGCAAAATTCCGCCATCCACTCCATTAAAGAAACCAAAAATCGAAAGTTGTACAAACATAATATCCCTTTTCAAAAGTTTAAAAATTCTTACAGTAGTTCTGTTTACTTAAATAGAATACATAAATATCTCTATCAAGCACTCGTTCAATTTTACAACAAAAAGGACTTTTTGACAATATAAACTTTTCTTATATTTTATTCAGGAGAACTCT > AM406671/1921367‑1921664 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |