| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM406671 | 1,942,432 | T→C | I80V (ATC→GTC) | llmg_1960 ← | hypothetical protein predicted by Glimmer/Critica |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM406671 | 1,942,432 | 0 | T | C | 99.9% | 4206.5 / NA | 1039 | I80V (ATC→GTC) | llmg_1960 | hypothetical protein predicted by Glimmer/Critica |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (537/501); total (537/502) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1039 total aligned reads displayed.
TTTTCGATTTTTAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGATTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCAATAATAA > AM406671/1942286‑1942578 | tCGATTTTTAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAgg < 1:8722999/149‑1 (MQ=255) aTTTTTAATTTCTTTAGTAATCGCTGAATAGAGCGGTAAAACCGTCAAAGTTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGATGTTGTACTTCTTTTGACTAAGGTCt > 2:5247899/1‑149 (MQ=255) aTTTTTAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCt > 1:7981225/1‑149 (MQ=255) aTTTTTAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCAGACGCCTTGTTGTACTACTTGTGACTAAGGTCt > 2:2840636/1‑149 (MQ=255) tttttAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGATGGTGAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTg < 2:1790934/149‑1 (MQ=255) ttttAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGGCTGt > 2:2138576/1‑149 (MQ=255) tttAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTc > 1:7222104/1‑149 (MQ=255) tttAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGCTCTGTc > 1:57533/1‑149 (MQ=255) aaTTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCa > 1:9422162/1‑149 (MQ=255) tttCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCaaa < 2:3382284/149‑1 (MQ=255) tctCTTTAGTAATCGCTAAATAGAGCTGTAAAACCGTCAAAATTGTTAAAACGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTATATCGAACACTCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCaaa < 2:4369302/147‑1 (MQ=255) tCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATa < 2:3626454/149‑1 (MQ=255) tCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATa > 1:9015250/1‑149 (MQ=255) aTCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACaa > 1:9572434/1‑149 (MQ=255) tCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAAt < 1:1823033/149‑1 (MQ=255) cGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATc < 1:3958928/149‑1 (MQ=255) tAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTc < 2:6036617/124‑1 (MQ=255) aagtAGAGCGGTAAAACGGTCAAAAGTGTTAAATCGTTTGTAAAAAAGACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGt < 2:8151552/146‑1 (MQ=255) aaaTAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTATAACAATCCTGt > 2:2383275/1‑149 (MQ=255) agCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCtt > 2:5527099/1‑149 (MQ=255) gTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTaaaa < 1:6905405/149‑1 (MQ=255) gTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTaaaa < 1:6083874/149‑1 (MQ=255) tAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTTGACTTCTTTTGACTAAGGTCTTTCTCAAATACTGTAACAATACTGTTTCCTTAAAac > 2:8319967/1‑149 (MQ=255) tAAAACCGTCAAAATAGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTATTTTGACTAAGGTCTGACCCAACTACTGTAACAATACTGTGTCCTCAAGac > 2:7873211/1‑149 (MQ=255) aaaCCGTCAAAATTGTTTAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAacca < 2:868348/149‑1 (MQ=255) aaCCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGTTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAaccac < 1:2183056/149‑1 (MQ=255) aaCCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAAACCTGTTTCCTTAAAaccac > 1:2889536/1‑149 (MQ=255) gTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAAt < 1:1137060/149‑1 (MQ=255) cAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTa < 2:6344355/149‑1 (MQ=255) aaaaTTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTAc > 1:7868318/1‑149 (MQ=255) aaaaTTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGAAAGTAGCGTCGTAAATCGAACAAGCTAACGCGTTGTGGTACTTCGTTTGACTAAGATCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCAACAAATAc > 1:3203034/1‑149 (MQ=255) aaaTTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACa > 1:4839255/1‑149 (MQ=255) aaTTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACaa > 1:6770355/1‑149 (MQ=255) aaTTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTATATCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACaa > 2:4123185/1‑149 (MQ=255) ttGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGGCGTTAATCGAAAAAGCTGACGCGTTGTTGTACTTCGTTTGACTAAGTTCTATACCAAATACGGTAACAATCATGTTTCATTAAACACCCCAAATAAAAga > 2:8046327/1‑148 (MQ=255) ttAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATc > 1:5228703/1‑149 (MQ=255) ttAAATAGTATAAAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATc < 2:938081/149‑1 (MQ=255) tAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCa < 1:5412162/149‑1 (MQ=255) aaTCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAAt > 1:664846/1‑149 (MQ=255) aTCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATc > 1:3071058/1‑149 (MQ=255) tCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATcc < 1:1612531/149‑1 (MQ=255) tCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATcc < 2:1986819/149‑1 (MQ=255) tCGTTTGTAAAAAAAACCGCTAAAAAGCTGTTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGATCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAACCCACCATTTACAAGCATCAATcc < 2:571321/149‑1 (MQ=255) cGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCt > 1:3481772/1‑149 (MQ=255) tttGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGa > 1:7471707/1‑149 (MQ=255) tttGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGa > 2:9110709/1‑149 (MQ=255) tGTAAAAAACACGGCTAAAAAGAAGGTAAGGAGCGTCGTAAATCGAACAAGCTGACGCGATGTGGTACTTCTCTTGACTAAAGTCTGTCCCAAATACTGTAACAATCCTGTTTCCATAAAACCACCAATTACAAACATCAATCCTGaaa > 2:1213612/1‑149 (MQ=255) tGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCTAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAGTCCTGaaa < 2:6450220/149‑1 (MQ=255) tGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGaaa > 2:8843920/1‑149 (MQ=255) gTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAAc < 1:5602982/149‑1 (MQ=255) tAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAAcc < 2:7008837/149‑1 (MQ=255) aaaaaaaaCGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCg > 1:2259511/1‑149 (MQ=255) aaaaaaCGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTa < 2:3072286/149‑1 (MQ=255) aaaaaaCGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTa > 1:3749374/1‑149 (MQ=255) aaaCGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACa < 2:8424619/149‑1 (MQ=255) aaCGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACaa < 1:5926128/149‑1 (MQ=255) aCGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAAt < 2:3160785/149‑1 (MQ=255) cGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATg > 1:8256792/1‑149 (MQ=255) cGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATg < 2:7594858/149‑1 (MQ=255) cTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACa < 1:4154828/149‑1 (MQ=255) tAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACAt < 2:4839255/149‑1 (MQ=255) agGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTg < 2:1603820/149‑1 (MQ=255) agGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTg > 1:3340331/1‑149 (MQ=255) agGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTg > 1:4277819/1‑149 (MQ=255) ggTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGa < 1:1986404/149‑1 (MQ=255) ggTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGa > 1:8818781/1‑149 (MQ=255) ggTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGa > 2:7254857/1‑149 (MQ=255) gTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGaa < 1:8515100/149‑1 (MQ=255) tAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGaaa < 2:2656090/149‑1 (MQ=255) gCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGa < 1:6271000/149‑1 (MQ=255) gCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATAATAAATGAAAAAACGa < 2:1416451/149‑1 (MQ=255) tcgtAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGtt < 1:1460254/149‑1 (MQ=255) cgtAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAAAGAGTTg > 2:2509276/1‑149 (MQ=255) tAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTc < 1:7413570/149‑1 (MQ=255) tAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTc < 1:8419960/149‑1 (MQ=255) acgCTGACGCGTTGTTGTACATCTTTTGACTAAGGTCTGTCCCACATACTGTAACAATCCTGTACCCTTAAAACCACCACTTACAAGCATCAATCCTGAAACCGTAACCACGACATGCCAATTGAAAAAACGCGCTCTcaccccacccc > 2:9496200/3‑148 (MQ=255) aaGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCa > 1:3668338/1‑149 (MQ=255) aaGCTGACGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACAAAAAAAAAAAAAAAACGAGTTGTCACTCCACCCa < 2:6615187/149‑1 (MQ=255) ccgcgTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTaa < 1:9206995/148‑1 (MQ=255) aCGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCCAATACTGTAACAATCCTGTTTCCTTAAAACCACCACTTCCAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAACCGAGTTGTCATTCCACCCAAACTaa > 2:6748607/1‑149 (MQ=255) aCGCGTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTaa > 2:5972248/1‑149 (MQ=255) aCGCGTAGTTGTACTGCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTAGTCACTCCACCCAAACtca > 2:4698964/1‑147 (MQ=255) gcgTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATg > 1:1020810/1‑149 (MQ=255) gcgTTGTTGTACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATg > 2:6837903/1‑149 (MQ=255) gttgtACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCaat < 2:7160562/149‑1 (MQ=255) ttgtGCTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGGTGTCACTCCACCCAAACTAATGGCaata > 2:7467530/1‑149 (MQ=255) tgtACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCaataa < 1:2461694/149‑1 (MQ=255) gtACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCaataat < 2:5030577/149‑1 (MQ=255) gtACTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCaataat < 1:446375/149‑1 (MQ=255) tACGTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATTCTGTTTCCTTAAAACCACGAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAAtt < 2:4518653/149‑1 (MQ=255) aCTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTg > 1:8124413/1‑149 (MQ=255) aCTTCTTTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTg > 2:3976810/1‑149 (MQ=255) cttcttTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGc > 1:4658773/1‑149 (MQ=255) cttcttTTGACTAAGGTCTGTCCCAAATACTGTAACAATACTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGc > 2:5809308/1‑149 (MQ=255) ttcttTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATg < 2:3778370/137‑1 (MQ=255) ttcttTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCa > 1:5038155/1‑149 (MQ=255) tcttTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCaa > 1:2626569/1‑149 (MQ=255) cttTTGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCaat > 1:1287858/1‑149 (MQ=255) tttGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCaataa < 1:7693364/149‑1 (MQ=255) tGACTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCAataata < 1:704953/149‑1 (MQ=255) | TTTTCGATTTTTAATTTCTTTAGTAATCGCTAAATAGAGCGGTAAAACCGTCAAAATTGTTAAATCGTTTGTAAAAAAAACGGCTAAAAAGAAGGTAAGTAGCGTCGTAAATCGAACAAGCTGACGCGTTGTTGTACTTCTTTTGATTAAGGTCTGTCCCAAATACTGTAACAATCCTGTTTCCTTAAAACCACCAATTACAAGCATCAATCCTGAAACCGTAACAATGACATGATAATTGAAAAAACGAGTTGTCACTCCACCCAAACTAATGGCAATAATTGCAATAATAA > AM406671/1942286‑1942578 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |